HHsearch alignment for GI: 254780226 and conserved domain: cd04160
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.97 E-value=1e-08 Score=78.56 Aligned_cols=80 Identities=30% Similarity=0.425 Sum_probs=54.2
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE----EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 867528887888999987404898736668674488337----9976855587776421865023357999851223543
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG----EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g----~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
T Consensus 2 ivilG~~~~GKTsll~~l~-~~~~~~~~~~~~~~~~Tvg~~~~~i~~~-----------------~~~l~iwD~~Gq--- 60 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLK-TLFSKYKGLPPSKITPTVGLNIGTIEVG-----------------NARLKFWDLGGQ--- 60 (167)
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCCCCCCCCCCCCCCCCEEEEEEEEC-----------------CEEEEEEECCCC---
T ss_conf 9999999988889999887-5036767776554035313268999989-----------------999999968987---
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 22246632899998730374788501234
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 61 -e~~~~l---~~~y~~~a~~ii~VvD~sd 85 (167)
T cd04160 61 -ESLRSL---WDKYYAECHAIIYVIDSTD 85 (167)
T ss_pred -HHHHHH---HHHHCCCCCEEEEEEECCC
T ss_conf -888789---9874289878999986686