HHsearch alignment for GI: 254780226 and conserved domain: cd04161

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.73  E-value=8.7e-08  Score=72.25  Aligned_cols=77  Identities=19%  Similarity=0.270  Sum_probs=51.2

Q ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf             86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r    5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG   84 (367)
Q Consensus         5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G   84 (367)
T Consensus         2 ililGLd~aGKTTil~~l~~~~---~~~-~~PT~G~~~~~~~~~~-----------------~~l~~~DlgG----~~~~   56 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQGEI---PKK-VAPTVGFTPTKLRLDK-----------------YEVCIFDLGG----GANF   56 (167)
T ss_pred             EEEEEECCCCHHHHHHHHCCCC---CCC-CCCCCCCCEEEEEECC-----------------EEEEEEECCC----CHHH
T ss_conf             8999008998899999982899---876-5087773179999899-----------------9999998998----7788


Q ss_pred             CCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             6632899998730374788501234
Q gi|254780226|r   85 EGLGNQFLAHIREVDAIIHVLRCFK  109 (367)
Q Consensus        85 ~GlGN~FL~~ir~aDalihVVdaf~  109 (367)
T Consensus        57 R~lW---~~Y~~~~~gIIfVVDssD   78 (167)
T cd04161          57 RGIW---VNYYAEAHGLVFVVDSSD   78 (167)
T ss_pred             HHHH---HHHCCCCCEEEEEEECCC
T ss_conf             8999---987347765799985575