HHsearch alignment for GI: 254780226 and conserved domain: cd04161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.73 E-value=8.7e-08 Score=72.25 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=51.2
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG 84 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G 84 (367)
T Consensus 2 ililGLd~aGKTTil~~l~~~~---~~~-~~PT~G~~~~~~~~~~-----------------~~l~~~DlgG----~~~~ 56 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEI---PKK-VAPTVGFTPTKLRLDK-----------------YEVCIFDLGG----GANF 56 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCC---CCC-CCCCCCCCEEEEEECC-----------------EEEEEEECCC----CHHH
T ss_conf 8999008998899999982899---876-5087773179999899-----------------9999998998----7788
Q ss_pred CCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 6632899998730374788501234
Q gi|254780226|r 85 EGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 85 ~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 57 R~lW---~~Y~~~~~gIIfVVDssD 78 (167)
T cd04161 57 RGIW---VNYYAEAHGLVFVVDSSD 78 (167)
T ss_pred HHHH---HHHCCCCCEEEEEEECCC
T ss_conf 8999---987347765799985575