HHsearch alignment for GI: 254780226 and conserved domain: cd04164
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.86 E-value=4.5e-21 Score=161.85 Aligned_cols=91 Identities=27% Similarity=0.406 Sum_probs=76.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
T Consensus 1 ~~~ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~~~~-----------------~~i~l~DTpG~~~~~ 63 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG-----------------IPVRLIDTAGIRETE 63 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEEECC-----------------EEEEEEECCCCCCCC
T ss_conf 979999889999899999999689733432889847863267895399-----------------889997267754445
Q ss_pred CCCCCCH-HHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632-899998730374788501234
Q gi|254780226|r 82 SKGEGLG-NQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlG-N~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 64 ~~~e~~~~~~~~~~i~~aDlil~vvD~~~ 92 (157)
T cd04164 64 DEIEKIGIERAREAIEEADLVLFVIDASR 92 (157)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 78999999999863015767999988987