HHsearch alignment for GI: 254780226 and conserved domain: cd04167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.37 E-value=0.016 Score=36.78 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=52.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHH---H-HH-------HHCCCCEEEEEEEEEE
Q ss_conf 48675288878889999874048987366686744883379976855587---7-76-------4218650233579998
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMH---K-LA-------EIAESKDLVPTRMSFV 72 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~---~-l~-------~~~~~~~~~p~~i~~i 72 (367)
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~-~~~--~~--~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlI 76 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHD-LTP--SG--KDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNII 76 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-HHH--HC--CCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEE
T ss_conf 5999827898989999999997344-555--40--444211357516466542035586145999982566750578778
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 5122354322246632899998730374788501234
Q gi|254780226|r 73 DIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 73 DvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 77 DTPGH~d-------F~~ev~~al~~~DgailVVDa~e 106 (213)
T cd04167 77 DTPGHVN-------FMDEVAAALRLSDGVVLVVDVVE 106 (213)
T ss_pred ECCCCHH-------HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 8987241-------79999988863776799998788