HHsearch alignment for GI: 254780226 and conserved domain: cd04174
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.14 E-value=0.033 Score=34.66 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=50.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 98248675288878889999874048987366686744883379976855587776421865023357999851223543
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
T Consensus 12 ~~~KiVlVGD~~VGKTsLl~~~~~~~------F~-~~y~pTv~~~~~~~-------i~v~~~---~v~L~lWDTAGqE~- 73 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC------YP-ETYVPTVFENYTAG-------LETEEQ---RVELSLWDTSGSPY- 73 (232)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCC------CC-CCCCCCEEEEEEEE-------EEECCE---EEEEEEEECCCCCC-
T ss_conf 58899999989989999999997398------99-98588368888999-------999999---99999983899701-
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 2224663289999873037478850123
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
T Consensus 74 ---y~~lr~---~yY~~a~~~ll~Fdvt 95 (232)
T cd04174 74 ---YDNVRP---LCYSDSDAVLLCFDIS 95 (232)
T ss_pred ---CCHHHH---HHHCCCCEEEEEEECC
T ss_conf ---003679---9740687899999689