HHsearch alignment for GI: 254780226 and conserved domain: cd04176
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.98 E-value=0.00017 Score=50.01 Aligned_cols=148 Identities=20% Similarity=0.289 Sum_probs=84.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 824867528887888999987404898736668674488337-9976855587776421865023357999851223543
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
T Consensus 1 ~~KivllGd~~VGKTsli~r~~~~-~-f~~~y~-pTi~~~~~k~i~~------------~~---~~~~l~iwDtaG~e~~ 62 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSG-T-FIEKYD-PTIEDFYRKEIEV------------DS---SPSVLEILDTAGTEQF 62 (163)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCCEEEEEEEE------------CC---EEEEEEEEECCCCHHH
T ss_conf 939999899997899999999709-8-997558-8523316799998------------88---9999999989885425
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV 160 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~ 160 (367)
T Consensus 63 ----~~~~---~~~~~~a~~~ilvydit~~~S-------------f~------------~l~~-~--------------- 94 (163)
T cd04176 63 ----ASMR---DLYIKNGQGFIVVYSLVNQQT-------------FQ------------DIKP-M--------------- 94 (163)
T ss_pred ----HHHH---HHHHCCCCEEEEEECCCCHHH-------------HH------------HHHH-H---------------
T ss_conf ----6788---998557865689712798899-------------99------------9999-9---------------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 78999998899887587410344313267776210235764101001003430111010134678778864369840332
Q gi|254780226|r 161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIII 240 (367)
Q Consensus 161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~i 240 (367)
T Consensus 95 -------------------------~~-~i~~-~~~~---~~~piilVgNK~DL~~~r-~V~~~e~~~~a~~~~~~~~E~ 143 (163)
T cd04176 95 -------------------------RD-QIVR-VKGY---EKVPIILVGNKVDLESER-EVSSAEGRALAEEWGCPFMET 143 (163)
T ss_pred -------------------------HH-HHHH-HHCC---CCCEEEEEEECCCCCCCC-CCCHHHHHHHHHHCCCEEEEE
T ss_conf -------------------------99-9999-7389---996399974313400127-699999999999859989998
Q ss_pred CCHHHH
Q ss_conf 100246
Q gi|254780226|r 241 SAAIEA 246 (367)
Q Consensus 241 sa~~E~ 246 (367)
T Consensus 144 SAk~~~ 149 (163)
T cd04176 144 SAKSKT 149 (163)
T ss_pred CCCCCC
T ss_conf 568781