HHsearch alignment for GI: 254780226 and conserved domain: cd04176

>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.98  E-value=0.00017  Score=50.01  Aligned_cols=148  Identities=20%  Similarity=0.289  Sum_probs=84.5

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf             824867528887888999987404898736668674488337-9976855587776421865023357999851223543
Q gi|254780226|r    2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG   80 (367)
Q Consensus         2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g   80 (367)
T Consensus         1 ~~KivllGd~~VGKTsli~r~~~~-~-f~~~y~-pTi~~~~~k~i~~------------~~---~~~~l~iwDtaG~e~~   62 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSG-T-FIEKYD-PTIEDFYRKEIEV------------DS---SPSVLEILDTAGTEQF   62 (163)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCCEEEEEEEE------------CC---EEEEEEEEECCCCHHH
T ss_conf             939999899997899999999709-8-997558-8523316799998------------88---9999999989885425


Q ss_pred             CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r   81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV  160 (367)
Q Consensus        81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~  160 (367)
T Consensus        63 ----~~~~---~~~~~~a~~~ilvydit~~~S-------------f~------------~l~~-~---------------   94 (163)
T cd04176          63 ----ASMR---DLYIKNGQGFIVVYSLVNQQT-------------FQ------------DIKP-M---------------   94 (163)
T ss_pred             ----HHHH---HHHHCCCCEEEEEECCCCHHH-------------HH------------HHHH-H---------------
T ss_conf             ----6788---998557865689712798899-------------99------------9999-9---------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             78999998899887587410344313267776210235764101001003430111010134678778864369840332
Q gi|254780226|r  161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIII  240 (367)
Q Consensus       161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~i  240 (367)
T Consensus        95 -------------------------~~-~i~~-~~~~---~~~piilVgNK~DL~~~r-~V~~~e~~~~a~~~~~~~~E~  143 (163)
T cd04176          95 -------------------------RD-QIVR-VKGY---EKVPIILVGNKVDLESER-EVSSAEGRALAEEWGCPFMET  143 (163)
T ss_pred             -------------------------HH-HHHH-HHCC---CCCEEEEEEECCCCCCCC-CCCHHHHHHHHHHCCCEEEEE
T ss_conf             -------------------------99-9999-7389---996399974313400127-699999999999859989998


Q ss_pred             CCHHHH
Q ss_conf             100246
Q gi|254780226|r  241 SAAIEA  246 (367)
Q Consensus       241 sa~~E~  246 (367)
T Consensus       144 SAk~~~  149 (163)
T cd04176         144 SAKSKT  149 (163)
T ss_pred             CCCCCC
T ss_conf             568781