Query gi|254780226|ref|YP_003064639.1| translation-associated GTPase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 367
No_of_seqs 152 out of 2957
Neff 7.7
Searched_HMMs 39220
Date Mon May 23 21:42:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780226.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09601 translation-associate 100.0 0 0 965.8 34.4 364 1-367 1-364 (364)
2 PTZ00258 GTP-binding protein; 100.0 0 0 959.6 30.9 364 1-367 21-388 (392)
3 TIGR00092 TIGR00092 GTP-bindin 100.0 0 0 931.5 25.0 367 1-367 1-390 (390)
4 COG0012 Predicted GTPase, prob 100.0 0 0 860.9 28.0 366 1-367 1-372 (372)
5 KOG1491 consensus 100.0 0 0 758.3 27.2 365 1-367 19-391 (391)
6 PRK09602 translation-associate 100.0 0 0 730.4 26.7 333 1-364 1-393 (396)
7 cd01900 YchF YchF subfamily. 100.0 0 0 637.4 24.3 274 5-281 1-274 (274)
8 cd01899 Ygr210 Ygr210 subfamil 100.0 0 0 556.5 16.7 280 5-294 1-309 (318)
9 COG1163 DRG Predicted GTPase [ 100.0 0 0 335.5 12.6 287 4-364 65-363 (365)
10 cd01896 DRG The developmentall 100.0 1.6E-39 4.2E-44 286.2 15.6 224 4-289 2-233 (233)
11 PRK12296 obgE GTPase ObgE; Rev 100.0 4.1E-38 1E-42 276.8 18.9 165 4-245 161-325 (495)
12 TIGR02729 Obg_CgtA GTP-binding 100.0 9.5E-39 2.4E-43 281.0 9.6 115 4-134 160-274 (296)
13 PRK12297 obgE GTPase ObgE; Rev 100.0 6.7E-38 1.7E-42 275.3 13.8 172 4-284 160-331 (429)
14 PRK12298 obgE GTPase ObgE; Rev 100.0 1.3E-36 3.4E-41 266.6 13.9 174 4-285 161-336 (380)
15 PRK12299 obgE GTPase ObgE; Rev 100.0 3.3E-36 8.5E-41 263.9 14.3 168 4-282 160-327 (334)
16 pfam06071 YchF-GTPase_C Protei 100.0 1.5E-35 3.8E-40 259.5 7.7 84 283-366 1-84 (84)
17 COG0536 Obg Predicted GTPase [ 100.0 3.3E-34 8.3E-39 250.4 13.0 106 4-133 161-266 (369)
18 cd04867 TGS_YchF_C TGS_YchF_C: 100.0 9.8E-35 2.5E-39 254.0 7.4 83 283-365 1-83 (83)
19 KOG1486 consensus 100.0 1.3E-32 3.4E-37 239.6 9.5 279 4-364 64-362 (364)
20 cd01881 Obg_like The Obg-like 100.0 1.4E-31 3.5E-36 232.8 13.2 176 7-281 1-176 (176)
21 cd01898 Obg Obg subfamily. Th 100.0 4.4E-28 1.1E-32 209.1 14.3 168 4-281 2-170 (170)
22 KOG1489 consensus 100.0 7.9E-29 2E-33 214.2 10.4 159 4-250 198-357 (366)
23 KOG1487 consensus 99.9 9.7E-28 2.5E-32 206.8 5.5 279 4-363 61-355 (358)
24 cd01878 HflX HflX subfamily. 99.9 5.1E-22 1.3E-26 168.2 13.9 87 4-109 43-132 (204)
25 cd01897 NOG NOG1 is a nucleola 99.9 3.3E-21 8.5E-26 162.7 13.5 164 4-281 2-167 (168)
26 cd04164 trmE TrmE (MnmE, ThdF, 99.9 4.5E-21 1.2E-25 161.8 12.2 91 2-109 1-92 (157)
27 TIGR03156 GTP_HflX GTP-binding 99.8 2.9E-20 7.3E-25 156.4 11.9 87 4-109 191-280 (351)
28 cd01895 EngA2 EngA2 subfamily. 99.8 9.4E-20 2.4E-24 152.9 13.8 91 2-109 2-96 (174)
29 pfam02421 FeoB_N Ferrous iron 99.8 7E-20 1.8E-24 153.8 12.4 86 4-108 1-88 (188)
30 cd04163 Era Era subfamily. Er 99.8 1.1E-19 2.9E-24 152.4 13.1 91 2-109 3-94 (168)
31 cd00880 Era_like Era (E. coli 99.8 1.2E-19 3.1E-24 152.2 12.6 87 7-109 1-87 (163)
32 cd01879 FeoB Ferrous iron tran 99.8 9E-20 2.3E-24 153.1 11.9 83 7-108 1-85 (158)
33 cd01894 EngA1 EngA1 subfamily. 99.8 4.9E-19 1.3E-23 148.1 11.3 87 6-109 1-88 (157)
34 PRK00089 era GTP-binding prote 99.8 2.8E-18 7.1E-23 143.0 13.5 92 1-109 4-99 (296)
35 COG1160 Predicted GTPases [Gen 99.8 1.5E-17 3.8E-22 138.1 11.7 92 1-109 1-95 (444)
36 PRK00093 engA GTP-binding prot 99.7 1.4E-16 3.5E-21 131.7 13.3 91 1-109 1-93 (438)
37 cd04938 TGS_Obg-like TGS_Obg-l 99.7 9.6E-19 2.5E-23 146.1 1.7 65 283-365 1-76 (76)
38 cd01669 TGS_Ygr210_C TGS_Ygr21 99.7 4.7E-18 1.2E-22 141.5 3.8 65 283-364 1-75 (76)
39 TIGR03594 GTPase_EngA ribosome 99.7 3.2E-16 8.1E-21 129.2 12.9 89 4-109 1-90 (429)
40 PRK04213 GTP-binding protein; 99.7 3.4E-16 8.8E-21 128.9 12.5 86 1-109 1-94 (195)
41 PRK03003 engA GTP-binding prot 99.7 3.5E-16 9E-21 128.8 12.2 89 4-109 40-129 (474)
42 PRK09554 feoB ferrous iron tra 99.7 1.1E-16 2.9E-21 132.2 9.4 88 2-109 3-97 (772)
43 cd01876 YihA_EngB The YihA (En 99.7 2E-16 5.2E-21 130.4 10.2 84 4-108 1-92 (170)
44 TIGR03594 GTPase_EngA ribosome 99.7 9.5E-16 2.4E-20 126.0 12.2 91 2-109 172-266 (429)
45 PRK00093 engA GTP-binding prot 99.7 2.3E-15 5.9E-20 123.3 12.0 91 2-109 172-266 (438)
46 PRK03003 engA GTP-binding prot 99.6 1.4E-14 3.7E-19 118.0 14.0 91 2-109 211-305 (474)
47 PRK09518 bifunctional cytidyla 99.6 1.4E-14 3.7E-19 118.0 12.6 89 4-109 281-370 (714)
48 PRK11058 putative GTPase HflX; 99.6 4.4E-15 1.1E-19 121.5 9.3 87 4-109 199-288 (426)
49 PRK00454 engB GTPase EngB; Rev 99.6 6.8E-15 1.7E-19 120.2 10.0 83 3-107 25-116 (196)
50 TIGR00437 feoB ferrous iron tr 99.6 4.2E-15 1.1E-19 121.6 8.9 82 9-109 1-85 (733)
51 PRK09518 bifunctional cytidyla 99.6 4.7E-14 1.2E-18 114.5 13.2 91 2-109 452-546 (714)
52 COG1159 Era GTPase [General fu 99.6 5.7E-14 1.5E-18 114.0 12.0 92 1-109 2-97 (298)
53 TIGR03598 GTPase_YsxC ribosome 99.5 1E-13 2.7E-18 112.2 8.2 55 3-77 19-74 (179)
54 COG1084 Predicted GTPase [Gene 99.5 4.4E-13 1.1E-17 108.0 9.6 58 4-79 170-227 (346)
55 COG2262 HflX GTPases [General 99.4 1.5E-13 3.9E-18 111.1 5.6 87 4-109 194-283 (411)
56 cd04171 SelB SelB subfamily. 99.4 5.3E-12 1.3E-16 100.7 11.6 84 3-109 1-86 (164)
57 COG0370 FeoB Fe2+ transport sy 99.4 1.2E-12 3E-17 105.1 7.6 90 1-109 2-93 (653)
58 pfam01926 MMR_HSR1 GTPase of u 99.4 9.1E-13 2.3E-17 105.9 6.9 79 14-109 1-80 (106)
59 PRK05291 trmE tRNA modificatio 99.4 2.9E-12 7.4E-17 102.5 8.9 92 2-110 216-308 (445)
60 pfam10662 PduV-EutP Ethanolami 99.4 3.4E-12 8.8E-17 101.9 8.1 75 1-109 1-75 (143)
61 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 9.4E-11 2.4E-15 92.3 12.4 84 4-109 2-85 (168)
62 cd01666 TGS_DRG_C TGS_DRG_C: 99.3 5.1E-12 1.3E-16 100.8 4.3 69 283-363 1-73 (75)
63 pfam00009 GTP_EFTU Elongation 99.2 7.7E-11 2E-15 92.9 9.4 96 4-109 5-102 (185)
64 TIGR00450 thdF tRNA modificati 99.2 5.1E-11 1.3E-15 94.1 8.4 92 2-110 225-317 (473)
65 COG0486 ThdF Predicted GTPase 99.2 8.8E-11 2.2E-15 92.5 9.5 91 2-109 217-308 (454)
66 KOG1490 consensus 99.1 3.9E-10 9.9E-15 88.1 6.8 87 4-110 170-260 (620)
67 COG1160 Predicted GTPases [Gen 99.0 1.2E-09 3E-14 84.9 8.4 91 2-109 178-272 (444)
68 cd04105 SR_beta Signal recogni 99.0 3.9E-09 1E-13 81.3 11.0 81 5-109 3-84 (203)
69 cd04155 Arl3 Arl3 subfamily. 99.0 5.7E-09 1.4E-13 80.3 10.8 80 2-109 14-93 (173)
70 pfam00025 Arf ADP-ribosylation 99.0 4.4E-09 1.1E-13 81.0 10.0 80 2-109 14-93 (174)
71 cd04154 Arl2 Arl2 subfamily. 99.0 1.1E-08 2.9E-13 78.2 11.7 80 2-109 14-93 (173)
72 cd04160 Arfrp1 Arfrp1 subfamil 99.0 1E-08 2.6E-13 78.6 10.8 80 5-109 2-85 (167)
73 pfam09439 SRPRB Signal recogni 99.0 6.7E-09 1.7E-13 79.8 9.8 80 4-109 5-87 (181)
74 KOG1191 consensus 99.0 7.9E-09 2E-13 79.3 9.9 89 2-107 268-358 (531)
75 KOG1423 consensus 98.9 3.1E-09 8E-14 82.0 7.5 92 2-110 72-168 (379)
76 cd00881 GTP_translation_factor 98.9 4.1E-08 1.1E-12 74.5 12.9 80 5-109 2-97 (189)
77 cd01858 NGP_1 NGP-1. Autoanti 98.9 1.4E-09 3.6E-14 84.4 5.2 56 2-77 102-157 (157)
78 cd01856 YlqF YlqF. Proteins o 98.9 2.8E-09 7.1E-14 82.3 5.8 35 3-37 116-150 (171)
79 cd00878 Arf_Arl Arf (ADP-ribos 98.9 1.8E-08 4.6E-13 76.8 9.9 78 4-109 1-78 (158)
80 cd01616 TGS The TGS domain, na 98.9 1.9E-09 5E-14 83.4 4.8 58 285-364 2-59 (60)
81 cd01849 YlqF_related_GTPase Yl 98.9 2.7E-09 7E-14 82.4 5.0 56 2-77 100-155 (155)
82 TIGR03596 GTPase_YlqF ribosome 98.9 3E-09 7.7E-14 82.1 5.0 59 2-80 118-176 (276)
83 PRK09563 rbgA ribosomal biogen 98.8 4.1E-09 1E-13 81.2 5.0 59 2-80 121-179 (282)
84 cd01859 MJ1464 MJ1464. This f 98.8 6.3E-09 1.6E-13 80.0 5.6 34 4-37 103-136 (156)
85 cd04156 ARLTS1 ARLTS1 subfamil 98.8 5.8E-08 1.5E-12 73.5 10.3 79 4-109 1-79 (160)
86 COG1161 Predicted GTPases [Gen 98.8 7.6E-09 1.9E-13 79.4 5.7 61 2-82 132-192 (322)
87 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 8.1E-09 2.1E-13 79.2 5.8 57 3-79 84-140 (141)
88 cd04159 Arl10_like Arl10-like 98.8 8.5E-08 2.2E-12 72.3 11.0 79 4-109 1-79 (159)
89 cd04157 Arl6 Arl6 subfamily. 98.8 5.8E-08 1.5E-12 73.4 10.0 79 5-109 2-80 (162)
90 PTZ00133 ADP-ribosylation fact 98.8 2.5E-07 6.5E-12 69.1 12.6 80 2-109 17-96 (182)
91 KOG0410 consensus 98.8 1.2E-08 3E-13 78.2 5.1 87 4-109 180-269 (410)
92 smart00177 ARF ARF-like small 98.8 3.5E-07 9E-12 68.2 12.6 80 2-109 13-92 (175)
93 smart00178 SAR Sar1p-like memb 98.7 1.2E-07 3E-12 71.3 9.7 80 2-109 17-96 (184)
94 cd04161 Arl2l1_Arl13_like Arl2 98.7 8.7E-08 2.2E-12 72.3 8.8 77 5-109 2-78 (167)
95 cd00882 Ras_like_GTPase Ras-li 98.7 1.2E-07 3.2E-12 71.2 9.1 146 7-246 1-146 (157)
96 cd04158 ARD1 ARD1 subfamily. 98.7 5.6E-07 1.4E-11 66.8 12.4 78 4-109 1-78 (169)
97 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.7 2.8E-07 7.2E-12 68.8 10.7 80 2-109 15-94 (174)
98 cd01890 LepA LepA subfamily. 98.7 6.1E-07 1.6E-11 66.6 12.4 95 4-109 2-102 (179)
99 cd04150 Arf1_5_like Arf1-Arf5- 98.7 3.1E-07 8E-12 68.5 10.7 79 3-109 1-79 (159)
100 cd01668 TGS_RelA_SpoT TGS_RelA 98.7 2.3E-08 5.7E-13 76.2 4.4 52 294-364 8-59 (60)
101 cd04149 Arf6 Arf6 subfamily. 98.6 4.8E-07 1.2E-11 67.3 10.6 80 2-109 9-88 (168)
102 pfam02824 TGS TGS domain. The 98.6 6.5E-08 1.7E-12 73.1 5.1 50 296-364 10-59 (60)
103 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.6 3.7E-06 9.4E-11 61.3 13.8 85 2-109 3-87 (183)
104 cd00154 Rab Rab family. Rab G 98.6 1.5E-06 3.8E-11 64.0 11.7 148 3-246 1-148 (159)
105 cd04151 Arl1 Arl1 subfamily. 98.6 1E-06 2.6E-11 65.1 10.6 78 4-109 1-78 (158)
106 pfam00071 Ras Ras family. Incl 98.6 1.8E-06 4.6E-11 63.4 11.8 147 4-246 1-147 (162)
107 TIGR00691 spoT_relA RelA/SpoT 98.6 1.1E-07 2.7E-12 71.7 5.3 63 282-366 380-443 (741)
108 PRK11092 bifunctional (p)ppGpp 98.6 8.6E-08 2.2E-12 72.3 4.8 62 282-365 386-447 (702)
109 PRK10872 relA GDP/GTP pyrophos 98.5 1.8E-07 4.5E-12 70.2 5.2 62 282-365 404-465 (743)
110 KOG1424 consensus 98.4 2.5E-07 6.3E-12 69.2 4.4 69 3-93 315-384 (562)
111 cd00879 Sar1 Sar1 subfamily. 98.4 2E-06 5.2E-11 63.1 9.1 80 2-109 19-98 (190)
112 KOG2484 consensus 98.4 3.8E-07 9.7E-12 68.0 5.1 79 2-105 252-330 (435)
113 COG0317 SpoT Guanosine polypho 98.4 5.3E-07 1.3E-11 67.0 5.8 63 282-366 387-449 (701)
114 pfam00350 Dynamin_N Dynamin fa 98.4 6.9E-07 1.8E-11 66.2 5.3 101 5-109 1-140 (168)
115 cd01892 Miro2 Miro2 subfamily. 98.4 1.5E-05 3.9E-10 57.1 12.1 147 3-248 5-154 (169)
116 smart00175 RAB Rab subfamily o 98.4 1.9E-05 4.8E-10 56.5 12.5 148 3-246 1-148 (164)
117 cd01863 Rab18 Rab18 subfamily. 98.3 1.5E-05 3.9E-10 57.1 11.9 150 3-248 1-150 (161)
118 cd04139 RalA_RalB RalA/RalB su 98.3 1.7E-05 4.4E-10 56.8 11.7 148 3-246 1-148 (164)
119 cd04119 RJL RJL (RabJ-Like) su 98.3 2.7E-05 6.9E-10 55.4 12.1 152 3-245 1-152 (168)
120 TIGR03597 GTPase_YqeH ribosome 98.3 1.1E-06 2.8E-11 64.9 4.4 57 4-80 156-217 (360)
121 cd04146 RERG_RasL11_like RERG/ 98.2 6.3E-05 1.6E-09 53.0 12.9 147 4-245 1-148 (165)
122 cd04123 Rab21 Rab21 subfamily. 98.2 3.5E-05 9E-10 54.7 11.6 146 3-246 1-148 (162)
123 cd00876 Ras Ras family. The R 98.2 3.9E-05 9.9E-10 54.4 11.5 146 4-245 1-146 (160)
124 cd04112 Rab26 Rab26 subfamily. 98.2 6.9E-05 1.8E-09 52.7 12.8 149 3-248 1-151 (191)
125 cd04114 Rab30 Rab30 subfamily. 98.2 6.6E-05 1.7E-09 52.9 12.5 149 2-246 7-155 (169)
126 cd04138 H_N_K_Ras_like H-Ras/N 98.2 3.3E-05 8.4E-10 54.9 10.9 147 3-246 2-148 (162)
127 cd04125 RabA_like RabA-like su 98.2 8.9E-05 2.3E-09 52.0 12.6 150 3-248 1-150 (188)
128 cd04101 RabL4 RabL4 (Rab-like4 98.2 7E-05 1.8E-09 52.7 12.1 148 3-246 1-150 (164)
129 cd04142 RRP22 RRP22 subfamily. 98.2 4.5E-05 1.1E-09 54.0 11.1 157 3-248 1-162 (198)
130 cd04124 RabL2 RabL2 subfamily. 98.2 7E-05 1.8E-09 52.7 11.8 146 3-248 1-146 (161)
131 cd04143 Rhes_like Rhes_like su 98.2 0.00024 6.1E-09 49.1 14.5 157 3-248 1-159 (247)
132 cd01868 Rab11_like Rab11-like. 98.2 7.2E-05 1.8E-09 52.6 11.8 149 2-246 3-151 (165)
133 cd04144 Ras2 Ras2 subfamily. 98.1 5E-05 1.3E-09 53.6 10.8 148 4-246 1-149 (190)
134 cd04113 Rab4 Rab4 subfamily. 98.1 0.00012 3E-09 51.2 12.6 148 3-246 1-148 (161)
135 KOG0073 consensus 98.1 3E-05 7.7E-10 55.1 9.4 140 1-244 15-162 (185)
136 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.1 0.00015 3.8E-09 50.5 12.9 151 2-248 2-152 (166)
137 cd04127 Rab27A Rab27a subfamil 98.1 7.1E-05 1.8E-09 52.6 11.2 160 2-246 4-163 (180)
138 cd01867 Rab8_Rab10_Rab13_like 98.1 0.00016 4E-09 50.3 12.8 151 2-248 3-153 (167)
139 cd04140 ARHI_like ARHI subfami 98.1 7.5E-05 1.9E-09 52.5 11.1 149 3-246 2-151 (165)
140 cd04117 Rab15 Rab15 subfamily. 98.1 9.1E-05 2.3E-09 51.9 11.6 150 3-248 1-150 (161)
141 smart00173 RAS Ras subfamily o 98.1 5.5E-05 1.4E-09 53.4 10.3 148 3-246 1-148 (164)
142 cd01866 Rab2 Rab2 subfamily. 98.1 0.00012 3.1E-09 51.0 11.9 151 2-248 4-154 (168)
143 cd04110 Rab35 Rab35 subfamily. 98.1 0.00015 3.8E-09 50.4 12.1 148 2-248 6-155 (199)
144 cd04162 Arl9_Arfrp2_like Arl9/ 98.1 2.4E-05 6.2E-10 55.8 8.0 79 4-109 1-79 (164)
145 cd04148 RGK RGK subfamily. Th 98.1 0.00014 3.6E-09 50.6 11.9 149 3-248 1-151 (221)
146 cd04122 Rab14 Rab14 subfamily. 98.1 7.2E-05 1.8E-09 52.6 10.4 149 2-248 2-152 (166)
147 cd04137 RheB Rheb (Ras Homolog 98.1 0.00024 6.2E-09 49.0 13.1 148 4-248 3-151 (180)
148 PRK13796 GTP-binding protein Y 98.1 4.6E-06 1.2E-10 60.7 4.2 35 5-39 165-204 (367)
149 COG0218 Predicted GTPase [Gene 98.1 7E-06 1.8E-10 59.4 5.1 54 3-76 25-79 (200)
150 cd01855 YqeH YqeH. YqeH is an 98.0 7.1E-06 1.8E-10 59.4 5.0 47 201-249 60-114 (190)
151 cd04104 p47_IIGP_like p47 (47- 98.0 1.2E-05 3.2E-10 57.7 6.2 87 2-106 1-89 (197)
152 cd04115 Rab33B_Rab33A Rab33B/R 98.0 0.00016 4.1E-09 50.3 11.7 144 3-243 3-149 (170)
153 cd01862 Rab7 Rab7 subfamily. 98.0 0.00026 6.7E-09 48.8 12.7 154 3-248 1-155 (172)
154 cd04107 Rab32_Rab38 Rab38/Rab3 98.0 0.00011 2.8E-09 51.4 10.6 153 3-248 1-156 (201)
155 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.0 0.00016 4.2E-09 50.2 11.4 150 3-248 3-152 (172)
156 cd01853 Toc34_like Toc34-like 98.0 5.6E-05 1.4E-09 53.3 8.9 88 2-107 31-124 (249)
157 cd04147 Ras_dva Ras-dva subfam 98.0 0.00016 4E-09 50.3 11.0 80 4-108 1-81 (198)
158 cd04145 M_R_Ras_like M-Ras/R-R 98.0 0.00018 4.6E-09 49.9 11.2 149 2-246 2-150 (164)
159 cd04136 Rap_like Rap-like subf 98.0 0.00013 3.4E-09 50.8 10.6 147 3-246 2-149 (163)
160 cd04176 Rap2 Rap2 subgroup. T 98.0 0.00017 4.4E-09 50.0 11.1 148 2-246 1-149 (163)
161 cd04118 Rab24 Rab24 subfamily. 98.0 0.00012 3.1E-09 51.0 10.3 149 3-248 1-154 (193)
162 cd01860 Rab5_related Rab5-rela 98.0 0.00033 8.4E-09 48.1 12.4 149 2-246 1-149 (163)
163 cd01861 Rab6 Rab6 subfamily. 98.0 0.00036 9.1E-09 47.9 12.6 147 4-246 2-148 (161)
164 cd01864 Rab19 Rab19 subfamily. 98.0 0.00027 6.9E-09 48.7 12.0 150 2-247 3-153 (165)
165 cd04121 Rab40 Rab40 subfamily. 98.0 0.00017 4.4E-09 50.0 10.9 149 3-248 7-155 (189)
166 cd01865 Rab3 Rab3 subfamily. 98.0 0.00033 8.4E-09 48.1 12.3 148 3-246 2-149 (165)
167 cd04120 Rab12 Rab12 subfamily. 97.9 0.00062 1.6E-08 46.3 13.4 151 3-249 1-152 (202)
168 cd01891 TypA_BipA TypA (tyrosi 97.9 0.00018 4.5E-09 50.0 10.6 91 4-109 4-100 (194)
169 cd04116 Rab9 Rab9 subfamily. 97.9 0.0002 5E-09 49.7 10.7 153 3-248 6-159 (170)
170 cd04111 Rab39 Rab39 subfamily. 97.9 0.0005 1.3E-08 46.9 12.7 151 2-248 2-154 (211)
171 cd04106 Rab23_lke Rab23-like s 97.9 0.00017 4.3E-09 50.1 10.2 151 3-248 1-151 (162)
172 cd00157 Rho Rho (Ras homology) 97.9 0.00027 6.9E-09 48.7 11.2 81 3-108 1-82 (171)
173 cd04175 Rap1 Rap1 subgroup. T 97.9 0.00016 4E-09 50.3 10.0 151 2-248 1-151 (164)
174 cd04109 Rab28 Rab28 subfamily. 97.9 0.00036 9.2E-09 47.9 11.7 147 3-248 1-154 (215)
175 cd04108 Rab36_Rab34 Rab34/Rab3 97.9 0.00058 1.5E-08 46.5 12.7 151 4-248 2-153 (170)
176 KOG0090 consensus 97.9 1.3E-05 3.3E-10 57.6 3.8 78 4-109 40-120 (238)
177 PTZ00132 GTP-binding nuclear p 97.9 0.00031 7.8E-09 48.3 10.8 148 2-248 6-153 (209)
178 cd04103 Centaurin_gamma Centau 97.8 0.0004 1E-08 47.6 10.8 143 3-246 1-145 (158)
179 cd04135 Tc10 TC10 subfamily. 97.8 0.00064 1.6E-08 46.2 11.5 82 3-109 1-83 (174)
180 cd04168 TetM_like Tet(M)-like 97.8 0.0017 4.2E-08 43.4 13.4 91 4-109 1-99 (237)
181 cd00877 Ran Ran (Ras-related n 97.8 0.00091 2.3E-08 45.2 12.0 147 3-248 1-147 (166)
182 COG1100 GTPase SAR1 and relate 97.8 0.00011 2.9E-09 51.2 7.2 82 3-108 6-88 (219)
183 cd04128 Spg1 Spg1p. Spg1p (se 97.8 0.00041 1E-08 47.5 10.1 84 3-109 1-84 (182)
184 cd04177 RSR1 RSR1 subgroup. R 97.8 0.0013 3.2E-08 44.2 12.5 82 3-109 2-84 (168)
185 TIGR00475 selB selenocysteine- 97.8 0.00027 6.8E-09 48.8 8.8 80 3-108 1-90 (627)
186 KOG2423 consensus 97.7 2.3E-05 5.9E-10 55.9 3.2 61 3-83 308-368 (572)
187 cd01870 RhoA_like RhoA-like su 97.7 0.00091 2.3E-08 45.2 10.9 82 3-108 2-83 (175)
188 pfam05049 IIGP Interferon-indu 97.7 0.00061 1.6E-08 46.3 9.6 88 2-107 35-124 (375)
189 cd04133 Rop_like Rop subfamily 97.7 0.00079 2E-08 45.6 10.1 81 3-107 2-82 (176)
190 pfam08477 Miro Miro-like prote 97.6 0.00063 1.6E-08 46.2 8.9 84 4-109 1-84 (118)
191 cd01873 RhoBTB RhoBTB subfamil 97.5 0.00071 1.8E-08 45.9 8.6 93 2-108 2-98 (195)
192 cd01889 SelB_euk SelB subfamil 97.5 0.00094 2.4E-08 45.1 8.6 96 3-108 1-102 (192)
193 TIGR00231 small_GTP small GTP- 97.5 0.0002 5.1E-09 49.6 4.9 98 2-105 3-105 (186)
194 TIGR00436 era GTP-binding prot 97.4 0.00028 7.2E-09 48.6 5.1 90 4-110 2-94 (278)
195 cd01888 eIF2_gamma eIF2-gamma 97.4 0.00075 1.9E-08 45.8 7.0 23 3-25 1-23 (203)
196 cd04170 EF-G_bact Elongation f 97.4 0.0032 8.2E-08 41.5 10.1 97 4-109 1-99 (268)
197 smart00174 RHO Rho (Ras homolo 97.4 0.0028 7E-08 41.9 9.8 79 5-108 1-80 (174)
198 TIGR00650 MG442 GTP-binding co 97.3 0.00026 6.7E-09 48.8 4.1 18 8-25 1-31 (123)
199 COG3596 Predicted GTPase [Gene 97.3 0.001 2.6E-08 44.9 6.8 90 2-108 39-128 (296)
200 cd01893 Miro1 Miro1 subfamily. 97.2 0.0054 1.4E-07 39.9 9.4 81 3-108 1-81 (166)
201 cd01871 Rac1_like Rac1-like su 97.1 0.0041 1.1E-07 40.7 8.4 83 2-108 1-83 (174)
202 KOG0075 consensus 97.1 0.00043 1.1E-08 47.4 3.1 78 3-109 21-100 (186)
203 KOG2485 consensus 97.0 0.0011 2.8E-08 44.6 4.7 66 3-85 144-214 (335)
204 CHL00189 infB translation init 97.0 0.029 7.4E-07 35.0 11.7 112 5-146 275-410 (770)
205 cd04102 RabL3 RabL3 (Rab-like3 97.0 0.0055 1.4E-07 39.9 7.9 87 3-109 1-89 (202)
206 cd01874 Cdc42 Cdc42 subfamily. 96.9 0.0082 2.1E-07 38.7 8.6 83 2-108 1-83 (175)
207 PRK12312 infB translation init 96.9 0.01 2.6E-07 38.1 8.9 111 5-147 120-252 (610)
208 smart00176 RAN Ran (Ras-relate 96.9 0.014 3.5E-07 37.2 9.2 140 8-246 1-140 (200)
209 cd04130 Wrch_1 Wrch-1 subfamil 96.9 0.011 2.7E-07 38.0 8.6 82 3-108 1-82 (173)
210 PRK05306 infB translation init 96.8 0.041 1E-06 34.1 11.5 110 5-147 344-477 (839)
211 cd04126 Rab20 Rab20 subfamily. 96.8 0.01 2.7E-07 38.0 8.3 79 3-109 1-79 (220)
212 cd04132 Rho4_like Rho4-like su 96.8 0.013 3.2E-07 37.5 8.4 83 4-109 2-84 (187)
213 KOG0074 consensus 96.7 0.011 2.9E-07 37.8 7.9 78 3-110 18-97 (185)
214 cd01875 RhoG RhoG subfamily. 96.7 0.019 4.9E-07 36.2 8.7 83 2-108 3-85 (191)
215 KOG0070 consensus 96.7 0.0067 1.7E-07 39.3 6.3 80 2-109 17-96 (181)
216 KOG0078 consensus 96.6 0.027 6.9E-07 35.2 9.3 144 2-247 12-161 (207)
217 pfam04670 Gtr1_RagA Gtr1/RagA 96.5 0.016 4.2E-07 36.7 7.5 82 4-108 1-87 (230)
218 TIGR02528 EutP ethanolamine ut 96.5 0.0094 2.4E-07 38.3 6.0 77 4-112 2-78 (144)
219 pfam04548 AIG1 AIG1 family. Ar 96.4 0.026 6.6E-07 35.3 8.2 83 3-107 1-93 (200)
220 PRK11300 livG leucine/isoleuci 96.4 0.077 2E-06 32.2 10.4 32 5-48 34-65 (255)
221 cd04167 Snu114p Snu114p subfam 96.4 0.016 4.1E-07 36.8 6.8 94 4-109 2-106 (213)
222 PRK13695 putative NTPase; Prov 96.3 0.0034 8.6E-08 41.3 3.0 24 1-24 2-25 (174)
223 PRK05433 GTP-binding protein L 96.3 0.039 9.9E-07 34.2 8.4 109 5-133 10-150 (601)
224 PRK04000 translation initiatio 96.3 0.015 3.7E-07 37.0 6.2 94 3-109 9-119 (410)
225 TIGR00750 lao LAO/AO transport 96.3 0.0028 7.1E-08 41.9 2.5 22 3-24 39-60 (333)
226 cd04129 Rho2 Rho2 subfamily. 96.2 0.032 8.2E-07 34.7 7.7 82 3-108 2-83 (187)
227 cd04131 Rnd Rnd subfamily. Th 96.2 0.053 1.4E-06 33.3 8.7 82 3-108 2-83 (178)
228 cd01886 EF-G Elongation factor 96.1 0.035 8.8E-07 34.5 7.5 89 4-109 1-99 (270)
229 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 96.1 0.072 1.8E-06 32.4 9.2 82 3-108 2-83 (222)
230 cd01884 EF_Tu EF-Tu subfamily. 96.1 0.031 7.9E-07 34.8 7.3 90 3-109 3-100 (195)
231 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 96.1 0.033 8.4E-07 34.7 7.4 84 1-108 12-95 (232)
232 COG0488 Uup ATPase components 96.1 0.009 2.3E-07 38.5 4.5 41 3-46 30-70 (530)
233 COG1116 TauB ABC-type nitrate/ 96.1 0.012 3.1E-07 37.6 5.1 45 5-49 32-81 (248)
234 TIGR00993 3a0901s04IAP86 chlor 96.1 0.0082 2.1E-07 38.7 4.2 88 2-107 124-217 (772)
235 cd04134 Rho3 Rho3 subfamily. 96.1 0.055 1.4E-06 33.2 8.4 81 4-108 2-82 (189)
236 KOG1954 consensus 96.1 0.035 8.9E-07 34.5 7.3 103 5-108 61-192 (532)
237 PRK12735 elongation factor Tu; 96.0 0.017 4.2E-07 36.7 5.3 88 2-109 12-110 (396)
238 cd01885 EF2 EF2 (for archaea a 95.9 0.041 1E-06 34.0 6.9 91 4-109 2-108 (222)
239 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 95.9 0.094 2.4E-06 31.6 8.7 83 2-108 5-87 (182)
240 cd04169 RF3 RF3 subfamily. Pe 95.9 0.056 1.4E-06 33.1 7.6 89 4-109 4-106 (267)
241 KOG0084 consensus 95.8 0.17 4.4E-06 29.8 9.8 84 3-109 10-93 (205)
242 COG4172 ABC-type uncharacteriz 95.8 0.11 2.7E-06 31.2 8.7 32 4-35 38-69 (534)
243 PRK00741 prfC peptide chain re 95.7 0.1 2.6E-06 31.4 8.4 89 4-109 12-114 (526)
244 PRK00049 elongation factor Tu; 95.6 0.076 1.9E-06 32.2 7.4 81 3-109 13-111 (397)
245 smart00053 DYNc Dynamin, GTPas 95.6 0.096 2.5E-06 31.5 7.9 23 4-26 28-50 (240)
246 PRK13646 cbiO cobalt transport 95.6 0.21 5.5E-06 29.2 12.7 196 4-275 35-255 (286)
247 PRK10419 nikE nickel transport 95.6 0.22 5.5E-06 29.1 11.5 168 4-245 40-213 (266)
248 KOG0076 consensus 95.5 0.028 7.3E-07 35.1 5.0 80 3-109 18-104 (197)
249 pfam00735 Septin Septin. Membe 95.5 0.064 1.6E-06 32.7 6.8 67 3-77 5-72 (280)
250 pfam08438 MMR_HSR1_C GTPase of 95.5 0.01 2.6E-07 38.1 2.6 58 227-284 6-92 (92)
251 cd01883 EF1_alpha Eukaryotic e 95.4 0.11 2.9E-06 31.1 7.8 94 5-109 2-112 (219)
252 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.022 5.7E-07 35.8 4.2 34 4-49 28-61 (144)
253 cd03301 ABC_MalK_N The N-termi 95.4 0.15 3.7E-06 30.3 8.3 34 4-49 28-61 (213)
254 cd03245 ABCC_bacteriocin_expor 95.4 0.018 4.7E-07 36.4 3.6 36 3-50 31-66 (220)
255 PRK13351 elongation factor G; 95.4 0.11 2.8E-06 31.1 7.6 90 4-110 10-109 (687)
256 PRK11819 putative ABC transpor 95.4 0.024 6.1E-07 35.6 4.1 24 3-26 34-57 (556)
257 KOG0395 consensus 95.3 0.23 5.9E-06 28.9 9.0 79 3-107 4-84 (196)
258 cd01852 AIG1 AIG1 (avrRpt2-ind 95.3 0.19 4.7E-06 29.6 8.5 84 3-107 1-93 (196)
259 cd03293 ABC_NrtD_SsuB_transpor 95.2 0.028 7E-07 35.2 4.1 33 4-48 32-64 (220)
260 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.2 0.02 5.1E-07 36.1 3.3 35 3-49 30-64 (238)
261 PRK10636 putative ABC transpor 95.2 0.027 6.8E-07 35.3 3.9 28 4-31 29-56 (638)
262 KOG0448 consensus 95.2 0.12 3E-06 30.9 7.2 102 2-107 109-242 (749)
263 COG0012 Predicted GTPase, prob 95.2 0.03 7.7E-07 34.9 4.2 61 259-327 279-349 (372)
264 cd01882 BMS1 Bms1. Bms1 is an 95.2 0.065 1.7E-06 32.7 5.8 89 2-131 39-127 (225)
265 PRK13768 GTPase; Provisional 95.1 0.045 1.2E-06 33.7 4.9 24 1-24 1-24 (253)
266 cd03298 ABC_ThiQ_thiamine_tran 95.1 0.03 7.7E-07 34.9 4.0 32 4-47 26-57 (211)
267 cd04166 CysN_ATPS CysN_ATPS su 95.1 0.17 4.2E-06 29.9 7.7 96 4-109 1-112 (208)
268 COG1134 TagH ABC-type polysacc 95.0 0.03 7.6E-07 35.0 3.8 33 4-48 55-87 (249)
269 pfam03308 ArgK ArgK protein. T 95.0 0.019 5E-07 36.2 2.8 23 2-24 29-51 (267)
270 cd03259 ABC_Carb_Solutes_like 95.0 0.025 6.5E-07 35.4 3.3 34 4-49 28-61 (213)
271 PRK11248 tauB taurine transpor 95.0 0.04 1E-06 34.1 4.3 33 5-49 30-62 (255)
272 cd03252 ABCC_Hemolysin The ABC 95.0 0.025 6.4E-07 35.5 3.3 34 4-49 30-63 (237)
273 cd03290 ABCC_SUR1_N The SUR do 94.9 0.028 7.2E-07 35.1 3.4 22 4-25 29-50 (218)
274 cd01850 CDC_Septin CDC/Septin. 94.9 0.03 7.7E-07 34.9 3.5 65 3-77 5-73 (276)
275 cd03369 ABCC_NFT1 Domain 2 of 94.8 0.028 7.1E-07 35.1 3.3 34 4-49 36-69 (207)
276 COG0237 CoaE Dephospho-CoA kin 94.8 0.025 6.3E-07 35.5 3.0 24 1-24 1-24 (201)
277 TIGR01277 thiQ thiamine ABC tr 94.8 0.035 9E-07 34.4 3.8 35 4-50 26-60 (213)
278 cd03228 ABCC_MRP_Like The MRP 94.8 0.029 7.3E-07 35.1 3.3 34 4-49 30-63 (171)
279 cd03289 ABCC_CFTR2 The CFTR su 94.8 0.029 7.3E-07 35.1 3.3 23 3-25 31-53 (275)
280 cd03268 ABC_BcrA_bacitracin_re 94.8 0.033 8.5E-07 34.6 3.6 33 5-49 29-61 (208)
281 COG1618 Predicted nucleotide k 94.8 0.025 6.4E-07 35.5 2.9 56 1-75 4-59 (179)
282 cd03251 ABCC_MsbA MsbA is an e 94.7 0.033 8.3E-07 34.7 3.4 34 4-49 30-63 (234)
283 cd03257 ABC_NikE_OppD_transpor 94.7 0.048 1.2E-06 33.5 4.2 33 4-48 33-65 (228)
284 PRK10522 multidrug transporter 94.7 0.033 8.5E-07 34.6 3.4 11 87-97 75-85 (547)
285 cd03291 ABCC_CFTR1 The CFTR su 94.7 0.032 8.2E-07 34.7 3.3 32 4-47 65-96 (282)
286 COG2274 SunT ABC-type bacterio 94.7 0.035 8.9E-07 34.5 3.5 22 4-25 501-522 (709)
287 cd03250 ABCC_MRP_domain1 Domai 94.7 0.065 1.7E-06 32.7 4.8 22 4-25 33-54 (204)
288 PTZ00141 elongation factor 1 a 94.7 0.12 3E-06 30.9 6.1 82 2-110 7-121 (443)
289 PRK10790 putative multidrug tr 94.6 0.035 9E-07 34.5 3.3 19 5-23 370-388 (593)
290 TIGR02211 LolD_lipo_ex lipopro 94.6 0.043 1.1E-06 33.9 3.8 41 5-57 34-74 (221)
291 cd03253 ABCC_ATM1_transporter 94.6 0.035 9E-07 34.4 3.2 34 4-49 29-62 (236)
292 PRK09435 arginine/ornithine tr 94.5 0.029 7.3E-07 35.1 2.7 23 2-24 49-71 (325)
293 cd03254 ABCC_Glucan_exporter_l 94.5 0.038 9.7E-07 34.2 3.3 36 2-49 29-64 (229)
294 PRK11147 ABC transporter ATPas 94.5 0.037 9.5E-07 34.3 3.2 25 4-28 31-55 (632)
295 PRK10789 putative multidrug tr 94.5 0.033 8.4E-07 34.6 2.9 20 5-24 344-363 (569)
296 PRK13638 cbiO cobalt transport 94.5 0.038 9.6E-07 34.3 3.1 31 5-47 30-60 (271)
297 cd03244 ABCC_MRP_domain2 Domai 94.4 0.042 1.1E-06 33.9 3.4 34 4-49 32-65 (221)
298 PRK13546 teichoic acids export 94.4 0.038 9.8E-07 34.2 3.2 32 4-47 52-83 (264)
299 KOG0468 consensus 94.4 0.25 6.4E-06 28.7 7.3 88 4-110 130-233 (971)
300 cd03288 ABCC_SUR2 The SUR doma 94.4 0.043 1.1E-06 33.9 3.3 35 4-50 49-83 (257)
301 cd03248 ABCC_TAP TAP, the Tran 94.4 0.043 1.1E-06 33.9 3.3 34 4-49 42-75 (226)
302 PRK11160 cysteine/glutathione 94.3 0.047 1.2E-06 33.6 3.4 14 315-328 363-376 (575)
303 cd03217 ABC_FeS_Assembly ABC-t 94.3 0.057 1.5E-06 33.0 3.8 36 4-49 28-63 (200)
304 KOG0462 consensus 94.2 0.087 2.2E-06 31.8 4.6 114 5-134 63-202 (650)
305 PRK13657 cyclic beta-1,2-gluca 94.2 0.052 1.3E-06 33.3 3.5 15 313-327 355-369 (585)
306 PRK11176 lipid transporter ATP 94.2 0.037 9.5E-07 34.3 2.7 21 4-24 370-390 (581)
307 PRK11701 phnK phosphonates tra 94.2 0.049 1.2E-06 33.5 3.3 22 4-25 34-55 (258)
308 CHL00071 tufA elongation facto 94.2 0.12 3.1E-06 30.8 5.4 89 3-109 13-110 (409)
309 PRK12317 elongation factor 1-a 94.2 0.3 7.5E-06 28.2 7.3 86 3-109 8-120 (426)
310 PRK11174 cysteine/glutathione 94.2 0.042 1.1E-06 34.0 2.9 18 311-328 368-385 (588)
311 PRK13641 cbiO cobalt transport 94.2 0.051 1.3E-06 33.4 3.4 33 4-48 35-67 (286)
312 KOG0394 consensus 94.2 0.22 5.7E-06 29.1 6.6 150 2-244 9-162 (210)
313 PRK13540 cytochrome c biogenes 94.2 0.051 1.3E-06 33.4 3.3 33 4-48 29-61 (200)
314 cd03224 ABC_TM1139_LivF_branch 94.1 0.051 1.3E-06 33.4 3.3 32 5-48 29-60 (222)
315 KOG0054 consensus 94.1 0.052 1.3E-06 33.3 3.3 42 2-48 547-588 (1381)
316 PRK11147 ABC transporter ATPas 94.1 0.069 1.8E-06 32.5 3.9 22 4-25 347-368 (632)
317 cd03296 ABC_CysA_sulfate_impor 94.1 0.049 1.3E-06 33.5 3.2 34 4-49 30-63 (239)
318 PRK10895 putative ABC transpor 94.1 0.054 1.4E-06 33.2 3.3 33 5-49 32-64 (241)
319 cd03236 ABC_RNaseL_inhibitor_d 94.1 0.05 1.3E-06 33.4 3.1 22 5-26 29-50 (255)
320 cd03219 ABC_Mj1267_LivG_branch 94.1 0.053 1.3E-06 33.3 3.2 32 5-48 29-60 (236)
321 PRK10512 selenocysteinyl-tRNA- 94.1 0.34 8.6E-06 27.8 7.3 76 3-108 1-85 (615)
322 cd03246 ABCC_Protease_Secretio 94.0 0.063 1.6E-06 32.8 3.6 35 3-49 29-63 (173)
323 cd03266 ABC_NatA_sodium_export 94.0 0.054 1.4E-06 33.2 3.2 31 5-47 34-64 (218)
324 cd03297 ABC_ModC_molybdenum_tr 94.0 0.051 1.3E-06 33.4 3.1 33 5-49 26-58 (214)
325 cd03263 ABC_subfamily_A The AB 94.0 0.061 1.6E-06 32.8 3.4 32 5-48 31-62 (220)
326 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.0 0.05 1.3E-06 33.4 3.0 34 4-49 32-65 (218)
327 TIGR02857 CydD ABC transporter 93.9 0.079 2E-06 32.1 3.9 32 4-47 380-411 (570)
328 cd03234 ABCG_White The White s 93.9 0.044 1.1E-06 33.8 2.6 22 4-25 35-56 (226)
329 KOG0057 consensus 93.9 0.047 1.2E-06 33.6 2.7 20 4-23 380-399 (591)
330 PRK09544 znuC high-affinity zi 93.9 0.063 1.6E-06 32.7 3.3 23 4-26 32-54 (251)
331 PRK10247 putative ABC transpor 93.8 0.065 1.7E-06 32.7 3.4 33 4-48 35-67 (225)
332 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.8 0.063 1.6E-06 32.7 3.3 32 4-47 50-81 (224)
333 PRK12736 elongation factor Tu; 93.8 0.12 3.1E-06 30.8 4.7 78 3-109 13-110 (394)
334 PRK00081 coaE dephospho-CoA ki 93.8 0.056 1.4E-06 33.1 2.9 24 1-24 1-24 (199)
335 PRK13544 consensus 93.8 0.066 1.7E-06 32.6 3.3 33 4-48 29-61 (208)
336 cd03230 ABC_DR_subfamily_A Thi 93.8 0.066 1.7E-06 32.6 3.3 32 5-48 29-60 (173)
337 PRK09700 D-allose transporter 93.8 0.049 1.2E-06 33.5 2.6 33 5-49 34-66 (510)
338 cd03222 ABC_RNaseL_inhibitor T 93.7 0.073 1.9E-06 32.3 3.5 25 4-28 27-51 (177)
339 pfam04317 DUF463 YcjX-like fam 93.7 0.16 4.1E-06 30.0 5.2 33 3-36 1-36 (443)
340 cd03299 ABC_ModC_like Archeal 93.7 0.064 1.6E-06 32.7 3.1 34 4-49 27-60 (235)
341 PRK10771 thiQ thiamine transpo 93.7 0.065 1.7E-06 32.7 3.2 33 4-48 27-59 (233)
342 TIGR03411 urea_trans_UrtD urea 93.7 0.063 1.6E-06 32.7 3.1 32 5-48 31-62 (242)
343 PRK10584 putative ABC transpor 93.7 0.058 1.5E-06 33.0 2.9 34 4-49 38-71 (228)
344 COG5019 CDC3 Septin family pro 93.7 0.18 4.6E-06 29.7 5.4 61 2-77 23-92 (373)
345 PRK04004 translation initiatio 93.6 0.41 1.1E-05 27.3 7.2 88 5-108 8-104 (592)
346 PRK08356 hypothetical protein; 93.6 0.056 1.4E-06 33.1 2.7 23 2-24 5-27 (195)
347 PRK00007 elongation factor G; 93.6 0.26 6.6E-06 28.6 6.1 89 4-110 12-112 (693)
348 CHL00131 ycf16 sulfate ABC tra 93.6 0.054 1.4E-06 33.2 2.6 36 4-49 34-69 (252)
349 PRK13548 hmuV hemin importer A 93.6 0.072 1.8E-06 32.4 3.2 32 5-48 31-62 (257)
350 PTZ00327 eukaryotic translatio 93.6 0.35 9E-06 27.7 6.7 94 3-109 38-155 (460)
351 PRK11247 ssuB aliphatic sulfon 93.6 0.068 1.7E-06 32.5 3.1 24 4-27 40-63 (257)
352 PTZ00336 elongation factor 1-a 93.6 0.6 1.5E-05 26.1 7.9 82 2-110 7-121 (449)
353 cd03223 ABCD_peroxisomal_ALDP 93.6 0.08 2E-06 32.1 3.4 23 3-25 28-50 (166)
354 COG1131 CcmA ABC-type multidru 93.6 0.13 3.2E-06 30.7 4.4 33 5-49 34-66 (293)
355 PRK10636 putative ABC transpor 93.5 0.083 2.1E-06 32.0 3.5 20 5-24 341-360 (638)
356 cd03226 ABC_cobalt_CbiO_domain 93.5 0.078 2E-06 32.1 3.3 34 4-49 28-61 (205)
357 cd03237 ABC_RNaseL_inhibitor_d 93.5 0.069 1.8E-06 32.5 3.0 32 5-48 28-59 (246)
358 PRK10575 iron-hydroxamate tran 93.5 0.075 1.9E-06 32.2 3.2 23 4-26 39-61 (265)
359 cd03231 ABC_CcmA_heme_exporter 93.5 0.079 2E-06 32.1 3.3 34 4-49 28-61 (201)
360 cd03260 ABC_PstB_phosphate_tra 93.4 0.11 2.9E-06 31.0 4.0 39 4-49 28-66 (227)
361 KOG1249 consensus 93.4 0.052 1.3E-06 33.3 2.3 45 5-49 216-271 (572)
362 PRK10619 histidine/lysine/argi 93.4 0.079 2E-06 32.1 3.2 32 5-48 34-65 (257)
363 cd03225 ABC_cobalt_CbiO_domain 93.4 0.09 2.3E-06 31.7 3.5 33 5-49 30-62 (211)
364 PRK13542 consensus 93.4 0.081 2.1E-06 32.0 3.2 32 4-47 46-77 (224)
365 PRK13631 cbiO cobalt transport 93.3 0.088 2.2E-06 31.8 3.3 34 4-49 54-87 (320)
366 PRK11614 livF leucine/isoleuci 93.3 0.087 2.2E-06 31.8 3.3 34 4-49 33-66 (237)
367 cd03261 ABC_Org_Solvent_Resist 93.3 0.084 2.1E-06 31.9 3.2 32 4-47 28-59 (235)
368 TIGR03375 type_I_sec_LssB type 93.3 0.09 2.3E-06 31.7 3.3 13 315-327 487-499 (694)
369 cd03256 ABC_PhnC_transporter A 93.3 0.077 2E-06 32.2 3.0 33 5-49 30-62 (241)
370 PRK11308 dppF dipeptide transp 93.3 0.7 1.8E-05 25.7 11.1 173 4-246 43-217 (327)
371 TIGR02788 VirB11 P-type DNA tr 93.3 0.065 1.7E-06 32.7 2.6 21 5-25 161-181 (328)
372 cd03218 ABC_YhbG The ABC trans 93.2 0.088 2.3E-06 31.8 3.2 32 5-48 29-60 (232)
373 TIGR02546 III_secr_ATP type II 93.2 0.085 2.2E-06 31.9 3.1 27 2-28 153-179 (430)
374 PRK13644 cbiO cobalt transport 93.2 0.089 2.3E-06 31.8 3.2 33 4-48 30-62 (274)
375 cd03235 ABC_Metallic_Cations A 93.2 0.091 2.3E-06 31.7 3.3 33 4-48 27-59 (213)
376 cd03213 ABCG_EPDR ABCG transpo 93.2 0.067 1.7E-06 32.6 2.6 22 4-25 37-58 (194)
377 TIGR03410 urea_trans_UrtE urea 93.2 0.087 2.2E-06 31.8 3.2 33 5-49 29-61 (230)
378 TIGR03608 L_ocin_972_ABC putat 93.2 0.081 2.1E-06 32.0 3.0 33 4-48 26-58 (206)
379 PRK12739 elongation factor G; 93.2 0.3 7.6E-06 28.2 5.9 90 4-110 12-111 (693)
380 PRK13636 cbiO cobalt transport 93.2 0.09 2.3E-06 31.7 3.2 89 185-276 141-252 (285)
381 COG1136 SalX ABC-type antimicr 93.2 0.076 1.9E-06 32.2 2.8 23 5-27 34-56 (226)
382 PRK13648 cbiO cobalt transport 93.2 0.09 2.3E-06 31.7 3.2 34 4-49 37-70 (269)
383 TIGR02204 MsbA_rel ABC transpo 93.2 0.067 1.7E-06 32.6 2.5 32 4-47 368-399 (576)
384 PRK13538 cytochrome c biogenes 93.2 0.094 2.4E-06 31.6 3.3 33 4-48 29-61 (204)
385 PRK13639 cbiO cobalt transport 93.2 0.11 2.9E-06 31.0 3.7 33 4-48 30-62 (275)
386 PRK13547 hmuV hemin importer A 93.2 0.067 1.7E-06 32.6 2.5 23 4-26 29-51 (273)
387 PRK11629 lolD lipoprotein tran 93.1 0.092 2.3E-06 31.7 3.2 34 4-49 37-70 (233)
388 PRK07560 elongation factor EF- 93.1 0.47 1.2E-05 26.9 6.8 92 4-110 22-123 (730)
389 PRK11000 maltose/maltodextrin 93.1 0.099 2.5E-06 31.4 3.3 34 4-49 31-64 (369)
390 cd03247 ABCC_cytochrome_bd The 93.1 0.093 2.4E-06 31.6 3.2 35 3-49 29-63 (178)
391 cd03269 ABC_putative_ATPase Th 93.1 0.091 2.3E-06 31.7 3.1 33 5-49 29-61 (210)
392 COG1703 ArgK Putative periplas 93.1 0.075 1.9E-06 32.2 2.7 23 2-24 51-73 (323)
393 PRK11831 putative ABC transpor 93.1 0.094 2.4E-06 31.6 3.2 31 5-47 37-67 (269)
394 PTZ00243 ABC transporter; Prov 93.1 0.099 2.5E-06 31.4 3.3 20 5-24 689-708 (1560)
395 cd03216 ABC_Carb_Monos_I This 93.1 0.1 2.6E-06 31.3 3.3 32 5-48 29-60 (163)
396 PRK13632 cbiO cobalt transport 93.1 0.094 2.4E-06 31.6 3.1 34 4-49 38-71 (273)
397 cd03232 ABC_PDR_domain2 The pl 93.1 0.076 1.9E-06 32.2 2.7 21 4-24 35-55 (192)
398 cd03267 ABC_NatA_like Similar 93.0 0.091 2.3E-06 31.7 3.0 31 5-47 50-80 (236)
399 cd03265 ABC_DrrA DrrA is the A 93.0 0.1 2.5E-06 31.4 3.2 32 5-48 29-60 (220)
400 PRK13539 cytochrome c biogenes 93.0 0.099 2.5E-06 31.4 3.2 34 4-49 30-63 (206)
401 PRK13541 cytochrome c biogenes 93.0 0.097 2.5E-06 31.5 3.1 34 4-49 28-61 (195)
402 COG2019 AdkA Archaeal adenylat 93.0 0.076 1.9E-06 32.2 2.6 26 1-26 1-28 (189)
403 PRK13645 cbiO cobalt transport 93.0 0.096 2.4E-06 31.5 3.1 89 185-276 150-261 (289)
404 pfam03266 DUF265 Protein of un 93.0 0.075 1.9E-06 32.2 2.5 21 4-24 1-21 (168)
405 PRK11231 fecE iron-dicitrate t 93.0 0.1 2.5E-06 31.4 3.2 33 5-49 31-63 (255)
406 PRK13545 tagH teichoic acids e 93.0 0.15 3.7E-06 30.3 4.0 23 4-26 52-74 (549)
407 PRK10253 iron-enterobactin tra 93.0 0.084 2.1E-06 31.9 2.8 34 4-49 35-68 (265)
408 PRK09984 phosphonate/organopho 92.9 0.083 2.1E-06 31.9 2.7 23 4-26 32-54 (262)
409 PRK09580 sufC cysteine desulfu 92.9 0.085 2.2E-06 31.9 2.7 36 4-49 29-64 (248)
410 cd03264 ABC_drug_resistance_li 92.9 0.096 2.4E-06 31.5 2.9 34 4-49 27-60 (211)
411 PRK10938 putative molybdenum t 92.9 0.11 2.8E-06 31.1 3.3 22 4-25 31-52 (490)
412 cd03116 MobB Molybdenum is an 92.9 0.094 2.4E-06 31.6 2.9 20 5-24 4-23 (159)
413 PTZ00265 multidrug resistance 92.8 0.17 4.4E-06 29.8 4.2 24 3-26 412-435 (1467)
414 PRK11264 putative amino-acid A 92.8 0.11 2.9E-06 31.1 3.2 23 4-26 29-51 (248)
415 PRK10908 cell division protein 92.8 0.098 2.5E-06 31.5 3.0 33 4-48 30-62 (222)
416 cd00267 ABC_ATPase ABC (ATP-bi 92.8 0.11 2.8E-06 31.1 3.2 34 4-49 27-60 (157)
417 PRK13651 cobalt transporter AT 92.8 0.12 3E-06 30.9 3.3 32 4-47 35-66 (304)
418 PRK13652 cbiO cobalt transport 92.8 0.099 2.5E-06 31.4 2.9 34 4-49 32-65 (277)
419 PRK13635 cbiO cobalt transport 92.8 0.12 3E-06 30.9 3.3 33 4-48 35-67 (279)
420 PRK03695 vitamin B12-transport 92.8 0.083 2.1E-06 31.9 2.6 22 4-25 25-46 (245)
421 cd03300 ABC_PotA_N PotA is an 92.8 0.11 2.8E-06 31.1 3.2 33 5-49 29-61 (232)
422 PRK09493 glnQ glutamine ABC tr 92.8 0.11 2.7E-06 31.2 3.1 23 4-26 29-51 (240)
423 cd03214 ABC_Iron-Siderophores_ 92.7 0.12 3E-06 30.9 3.3 34 4-49 27-60 (180)
424 KOG1489 consensus 92.7 0.079 2E-06 32.1 2.4 23 193-215 222-244 (366)
425 PRK11124 artP arginine transpo 92.7 0.12 3E-06 30.9 3.2 33 4-48 30-62 (242)
426 TIGR00991 3a0901s02IAP34 GTP-b 92.7 0.19 4.9E-06 29.5 4.3 87 2-106 39-128 (328)
427 TIGR00176 mobB molybdopterin-g 92.7 0.058 1.5E-06 33.0 1.7 35 5-41 2-36 (165)
428 PRK13637 cbiO cobalt transport 92.6 0.099 2.5E-06 31.4 2.8 93 185-277 144-256 (287)
429 COG4988 CydD ABC-type transpor 92.6 0.13 3.2E-06 30.7 3.3 24 4-27 349-372 (559)
430 PRK10218 GTP-binding protein; 92.6 0.86 2.2E-05 25.1 8.4 91 4-110 7-104 (607)
431 COG1120 FepC ABC-type cobalami 92.6 0.17 4.4E-06 29.8 3.9 38 5-54 31-68 (258)
432 PRK13409 putative ATPase RIL; 92.5 0.2 5.1E-06 29.4 4.2 27 3-29 100-126 (590)
433 pfam04735 Baculo_helicase Bacu 92.5 0.075 1.9E-06 32.3 2.0 17 72-89 151-167 (1173)
434 COG4987 CydC ABC-type transpor 92.5 0.14 3.5E-06 30.5 3.4 33 3-47 365-397 (573)
435 cd03233 ABC_PDR_domain1 The pl 92.5 0.1 2.6E-06 31.4 2.7 22 4-25 35-56 (202)
436 cd03215 ABC_Carb_Monos_II This 92.5 0.09 2.3E-06 31.7 2.4 32 5-48 29-60 (182)
437 PRK13633 cobalt transporter AT 92.4 0.14 3.6E-06 30.4 3.3 91 185-276 145-255 (281)
438 PRK13634 cbiO cobalt transport 92.4 0.11 2.9E-06 31.0 2.8 92 185-276 132-243 (276)
439 TIGR02315 ABC_phnC phosphonate 92.4 0.19 4.7E-06 29.6 3.9 37 5-50 31-73 (253)
440 cd03292 ABC_FtsE_transporter F 92.4 0.13 3.4E-06 30.6 3.1 33 5-49 30-62 (214)
441 PRK11153 metN DL-methionine tr 92.3 0.13 3.2E-06 30.7 3.0 31 5-47 34-64 (343)
442 TIGR00960 3a0501s02 Type II (G 92.2 0.1 2.7E-06 31.3 2.4 41 5-57 32-72 (216)
443 PRK09700 D-allose transporter 92.2 0.14 3.5E-06 30.4 3.1 21 5-25 292-312 (510)
444 cd03229 ABC_Class3 This class 92.2 0.14 3.5E-06 30.5 3.1 35 4-50 28-62 (178)
445 PRK13643 cbiO cobalt transport 92.2 0.14 3.6E-06 30.4 3.1 32 4-47 34-65 (288)
446 PRK10982 galactose/methyl gala 92.2 0.15 3.7E-06 30.3 3.2 22 4-25 26-47 (491)
447 PRK07261 topology modulation p 92.2 0.12 3.1E-06 30.9 2.7 79 3-104 1-85 (171)
448 cd03258 ABC_MetN_methionine_tr 92.2 0.1 2.6E-06 31.3 2.4 33 4-48 33-65 (233)
449 PRK13650 cbiO cobalt transport 92.1 0.15 3.8E-06 30.3 3.1 93 184-277 136-248 (276)
450 COG1122 CbiO ABC-type cobalt t 92.1 0.17 4.2E-06 29.9 3.4 24 4-27 32-55 (235)
451 PRK13543 cytochrome c biogenes 92.1 0.17 4.4E-06 29.8 3.4 32 4-47 39-70 (214)
452 PRK13640 cbiO cobalt transport 92.1 0.12 3.1E-06 30.9 2.7 87 185-275 144-253 (283)
453 PRK04040 adenylate kinase; Pro 92.1 0.13 3.4E-06 30.5 2.9 24 1-24 1-24 (189)
454 TIGR01271 CFTR_protein cystic 92.1 0.12 3E-06 30.9 2.6 25 3-27 1287-1311(1534)
455 PRK10851 sulfate/thiosulfate t 92.1 0.14 3.4E-06 30.5 2.9 32 5-48 31-62 (352)
456 COG1132 MdlB ABC-type multidru 92.0 0.16 4.2E-06 30.0 3.3 33 3-47 356-388 (567)
457 TIGR01184 ntrCD nitrate ABC tr 92.0 0.15 3.8E-06 30.2 3.1 23 5-27 14-36 (230)
458 PRK11288 araG L-arabinose tran 92.0 0.16 4E-06 30.1 3.1 22 4-25 32-53 (501)
459 COG0419 SbcC ATPase involved i 92.0 0.29 7.4E-06 28.3 4.5 22 5-27 28-49 (908)
460 cd03262 ABC_HisP_GlnQ_permease 92.0 0.16 4E-06 30.1 3.1 32 5-48 29-60 (213)
461 cd03295 ABC_OpuCA_Osmoprotecti 91.9 0.15 3.9E-06 30.2 3.0 33 4-48 29-61 (242)
462 COG1341 Predicted GTPase or GT 91.9 0.35 9E-06 27.7 4.9 93 4-107 75-210 (398)
463 KOG2655 consensus 91.9 0.26 6.6E-06 28.6 4.2 22 3-24 22-43 (366)
464 TIGR03522 GldA_ABC_ATP gliding 91.9 0.17 4.3E-06 29.9 3.2 32 5-48 31-62 (301)
465 PRK01184 hypothetical protein; 91.9 0.14 3.6E-06 30.4 2.8 22 3-24 2-23 (183)
466 PRK11288 araG L-arabinose tran 91.9 0.15 3.9E-06 30.2 3.0 20 5-24 282-301 (501)
467 PRK13642 cbiO cobalt transport 91.9 0.17 4.4E-06 29.8 3.2 92 184-276 139-250 (277)
468 PRK08118 topology modulation p 91.8 0.15 3.9E-06 30.2 2.9 81 1-104 1-85 (167)
469 COG0411 LivG ABC-type branched 91.8 0.035 9E-07 34.5 -0.4 31 5-47 33-63 (250)
470 COG1124 DppF ABC-type dipeptid 91.8 0.24 6.1E-06 28.9 3.9 161 4-244 35-202 (252)
471 cd03114 ArgK-like The function 91.8 0.12 3E-06 30.9 2.3 20 5-24 2-21 (148)
472 PRK10982 galactose/methyl gala 91.8 0.17 4.2E-06 29.9 3.1 21 5-25 277-297 (491)
473 PRK09270 frcK putative fructos 91.7 0.14 3.7E-06 30.3 2.7 22 3-24 35-56 (230)
474 PRK10744 phosphate transporter 91.6 0.14 3.6E-06 30.4 2.5 22 4-25 38-59 (257)
475 COG0703 AroK Shikimate kinase 91.6 0.19 4.8E-06 29.6 3.2 34 1-39 1-34 (172)
476 pfam05783 DLIC Dynein light in 91.5 1.1 2.9E-05 24.3 11.5 43 203-245 216-268 (490)
477 COG1121 ZnuC ABC-type Mn/Zn tr 91.5 0.33 8.4E-06 27.9 4.3 33 4-48 32-64 (254)
478 KOG0091 consensus 91.5 0.51 1.3E-05 26.6 5.3 81 3-109 9-93 (213)
479 TIGR03269 met_CoM_red_A2 methy 91.5 0.21 5.4E-06 29.2 3.3 22 4-25 28-49 (520)
480 COG0563 Adk Adenylate kinase a 91.4 0.2 5.1E-06 29.4 3.2 82 3-108 1-86 (178)
481 TIGR02324 CP_lyasePhnL phospho 91.4 0.17 4.3E-06 29.8 2.8 31 5-47 37-67 (224)
482 KOG0092 consensus 91.4 0.79 2E-05 25.3 6.2 83 3-108 6-88 (200)
483 cd03271 ABC_UvrA_II The excisi 91.4 0.16 4E-06 30.1 2.6 20 4-23 23-42 (261)
484 PRK10762 D-ribose transporter 91.4 0.2 5E-06 29.4 3.1 22 4-25 32-53 (501)
485 PRK11607 potG putrescine trans 91.4 0.18 4.6E-06 29.7 2.9 33 5-49 48-80 (377)
486 PRK10762 D-ribose transporter 91.4 0.16 4.2E-06 30.0 2.7 20 5-24 281-300 (501)
487 KOG0066 consensus 91.4 0.21 5.4E-06 29.2 3.3 36 4-48 292-327 (807)
488 PRK13537 lipooligosaccharide t 91.3 0.21 5.3E-06 29.3 3.2 32 5-48 34-65 (304)
489 PRK13647 cbiO cobalt transport 91.3 0.2 5.1E-06 29.4 3.1 34 4-49 33-66 (273)
490 PRK11144 modC molybdate transp 91.2 0.21 5.4E-06 29.2 3.1 33 5-49 27-59 (352)
491 COG3840 ThiQ ABC-type thiamine 91.2 0.23 5.8E-06 29.0 3.3 33 4-48 27-59 (231)
492 PRK03839 putative kinase; Prov 91.0 0.2 5.1E-06 29.4 2.8 22 3-24 1-22 (180)
493 PRK05703 flhF flagellar biosyn 91.0 0.49 1.2E-05 26.8 4.8 39 298-336 325-363 (412)
494 PRK09473 oppD oligopeptide tra 91.0 0.18 4.5E-06 29.8 2.5 178 4-245 44-223 (330)
495 PRK10070 glycine betaine trans 90.9 0.23 5.9E-06 28.9 3.1 32 5-48 57-88 (400)
496 PRK09452 potA putrescine/sperm 90.9 0.23 5.9E-06 29.0 3.0 33 5-49 46-78 (378)
497 PRK13649 cbiO cobalt transport 90.8 0.24 6.1E-06 28.8 3.1 34 4-49 35-68 (280)
498 KOG1707 consensus 90.8 1.3 3.4E-05 23.8 6.9 88 2-116 9-98 (625)
499 PRK13536 nodulation factor exp 90.8 0.25 6.5E-06 28.7 3.2 28 5-32 36-63 (306)
500 PRK13549 xylose transporter AT 90.8 0.19 4.9E-06 29.5 2.6 20 5-24 34-53 (513)
No 1
>PRK09601 translation-associated GTPase; Reviewed
Probab=100.00 E-value=0 Score=965.80 Aligned_cols=364 Identities=63% Similarity=1.025 Sum_probs=355.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 98248675288878889999874048987366686744883379976855587776421865023357999851223543
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
|+|||||||+|||||||||||||+ +.++++|||||||+||+|+++|||+|+++|+++++|+|++||+|+++||||||||
T Consensus 1 m~mkiGivGlPnvGKSTlFnalT~-~~~~~~nyPf~Ti~pn~g~v~VpD~r~~~l~~~~~p~k~i~a~v~~vDiaGLv~g 79 (364)
T PRK09601 1 MGLKCGIVGLPNVGKSTLFNALTK-AGAEAANYPFCTIEPNVGIVPVPDPRLDKLAEIVKPKKIVPTTIEFVDIAGLVKG 79 (364)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCC
T ss_conf 982488877999988999999967-9986458998887880068857854589998762876501125899965776787
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV 160 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~ 160 (367)
||+|+|||||||+|||+|||||||||||+|++++|++|++||++|+++|+.||++||+++++|+|+|..|..+.+++...
T Consensus 80 As~G~GLGN~FL~~iR~~DaiihVVr~F~d~~i~hv~G~vDP~rDie~I~~EL~l~Dl~~vek~~~rl~k~~k~~~k~~~ 159 (364)
T PRK09601 80 ASKGEGLGNKFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLESVEKRLERLEKKAKSGDKEAK 159 (364)
T ss_pred CCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 53467742899998873475677500026875468999969788999999999999999999999999755313244579
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 78999998899887587410344313267776210235764101001003430111010134678778864369840332
Q gi|254780226|r 161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIII 240 (367)
Q Consensus 161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~i 240 (367)
.+..++++++++|++++|+|.. +|+++++.++++++|+|+|||+|++|++|.+...+|.+.+++++++.+++..++++
T Consensus 160 ~e~~~L~k~~~~Le~~~~lr~~--~~~~ee~~~i~~~~lLT~KP~i~v~Nv~e~d~~~~n~~~~~l~~~~~~~~~~vi~~ 237 (364)
T PRK09601 160 AELELLEKLLEHLEEGKPARSL--ELTEEEKKLLKGLQLLTAKPVLYVANVDEDDLADGNPYVDKVREIAAKEGAEVVVI 237 (364)
T ss_pred HHHHHHHHHHHHHHCCCCHHHC--CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999998679966650--47888999999865653387599987686551125589999999998769918986
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCEECCCCCCHHHHHHCCCCHHCCCC
Q ss_conf 10024665528842677887753887422899999999872964661057875454012786767785110012103483
Q gi|254780226|r 241 SAAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDLITYFTVGPKETRAWTIPRGTNAQKAAGVIHTDFEKGF 320 (367)
Q Consensus 241 sa~~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL~li~~~tvg~~e~~aw~i~~GstA~d~A~~IHtDi~kgF 320 (367)
||++|.||++|+++|+.+||+++|++++|++++|+++|++|+||+||||||+|+||||||+||||+||||+|||||+|||
T Consensus 238 sa~~E~El~~l~~ee~~efl~~~gi~es~l~~iI~~~y~lL~Li~ffT~G~dE~rAWti~kGstA~~aAg~IHsD~~kgF 317 (364)
T PRK09601 238 CAKIEAELAELDDEEKAEFLEELGLEESGLDRLIRAGYDLLGLITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGF 317 (364)
T ss_pred EHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 34444666536998999999983887326899999999974976996258871023554799947998032010575294
Q ss_pred EEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEEEECCC
Q ss_conf 69997368887744996888874965315760796549889996379
Q gi|254780226|r 321 IRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILHFRFNV 367 (367)
Q Consensus 321 i~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~fnv 367 (367)
|||+|++|+|++++|||++||++||+|+|||||+|+|||||||||||
T Consensus 318 IrAev~~~~d~i~~gs~~~~k~~Gk~r~eGKdYiv~DGDii~f~fnv 364 (364)
T PRK09601 318 IRAEVISYDDLIAYGSEAGAKEAGKLRLEGKEYIVQDGDVMHFRFNV 364 (364)
T ss_pred EEEEEECHHHHHHCCCHHHHHHCCCCCCCCCCEEEECCCEEEEECCC
T ss_conf 79998149999881999999874870313882387269789996479
No 2
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=0 Score=959.58 Aligned_cols=364 Identities=49% Similarity=0.837 Sum_probs=344.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 98248675288878889999874048987366686744883379976855587776421865023357999851223543
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
+.||||||||||||||||||||| ++.+++||||||||+||+|+++|||+|+++||+|++|+|++|++|+|+||||||||
T Consensus 21 ~~m~iGivGlPNvGKSTlFnAlT-~~~v~~aNyPF~TIepN~gvv~VpD~Rl~~l~~~~~~kk~ipa~ve~vDIAGLV~G 99 (392)
T PTZ00258 21 NNLKMGIVGLPNVGKSTTFNALS-KQQVPAENFPFCTIDPNTARVPVPDERFDKLCQFFKPKSIVPATLDIVDIAGLVKG 99 (392)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCC
T ss_conf 78556786699997899999987-79974248998887783279967845688998751877610146899973455787
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHH
Q ss_conf 222466328999987303747885012345421134577673215788988887643322245777778752032-0467
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHK-SEEI 159 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~-~~~~ 159 (367)
||+|+|||||||+|||+|||||||||||+|++++|++|++||++|+++|++||+|||+++++|+|+|..|..+.+ ++..
T Consensus 100 As~G~GLGNkFL~~iR~~DaiihVVR~F~d~~I~hv~g~vDPv~Die~I~~ELilaDl~~vekr~~rl~k~~~~~~~k~~ 179 (392)
T PTZ00258 100 ASKGEGLGNAFLSHIRACDGIYHVVRAFEDEEITHVEGEVDPIRDLEIISSELVLKDLEFVEKLLDKLTKVINRGKDKSK 179 (392)
T ss_pred CCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 30268851899999884007999998724577778899979799999999999998899999999998867614645768
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHH-CCCHHHHHHHHHHHHHC-CCCC
Q ss_conf 778999998899887587410344313267776210235764101001003430111-01013467877886436-9840
Q gi|254780226|r 160 VLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDC-KKGNIYTEAVQRLASQQ-NAEM 237 (367)
Q Consensus 160 ~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~-~~~n~~~e~i~~l~~~~-~~~~ 237 (367)
..+.+++.++.++|++++|+|.. .|+++++.++++++|+|+|||+||+|++|.+. ..+|.+.+++.++..++ +..+
T Consensus 180 ~~~~~~l~k~~~~L~~g~~~~~~--~~~~ee~~~l~~~~llT~KP~lyvaNv~E~~~~~~~n~~~~~l~~~~~~~~~~~~ 257 (392)
T PTZ00258 180 KEELDVLKKVKELLEEGKWVRDG--KWTDKEIEFLNEYQLLTAKPMIYLVNMSEKDFVRQKNKWLAKIKEWVDENRPGPI 257 (392)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHC--CCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999999879932003--1577899999997887517828999868666432025899999999986389839
Q ss_pred CCCCCHHHHHHHHCC-CHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCEECCCCCCHHHHHHCCCCHH
Q ss_conf 332100246655288-4267788775388742289999999987296466105787545401278676778511001210
Q gi|254780226|r 238 IIISAAIEAEISQLP-EEERALFMEELDISISGLELLIRSGYRLLDLITYFTVGPKETRAWTIPRGTNAQKAAGVIHTDF 316 (367)
Q Consensus 238 i~isa~~E~ei~~l~-~ee~~e~l~~~~l~~tgl~~li~~~~~lL~li~~~tvg~~e~~aw~i~~GstA~d~A~~IHtDi 316 (367)
+++||++|.+|++|+ +|++.+||+++++++||++++|+++|++||||+||||||+|+||||+++||||+||||+|||||
T Consensus 258 I~isA~~E~eL~~l~~~ee~~~fl~~~gl~~sgl~~li~~~y~lL~LitffTvG~dE~rAWtikkGstA~eaAg~IHTDf 337 (392)
T PTZ00258 258 IPVSAELEEQLAQLSSEEERLAFLKEYGIDQSMLDKIIKTGYKLLNLIHFFTAGPDEVRCWTIRKGTKAPQAAGVIHSDF 337 (392)
T ss_pred EEEECHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99630637887633868999999998467764789999999998198689816887000466478993799866655566
Q ss_pred CCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEEEECCC
Q ss_conf 348369997368887744996888874965315760796549889996379
Q gi|254780226|r 317 EKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILHFRFNV 367 (367)
Q Consensus 317 ~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~fnv 367 (367)
+||||||+|++|+||+++||+++||++||+|+|||||+|||||||||||||
T Consensus 338 ~kGFIrAevi~~~d~i~~g~~~~ak~~Gk~R~eGKdYiv~DGDVi~f~fnV 388 (392)
T PTZ00258 338 EKGFICAEVMAYDDFVELGSEAAAKAEGKYRQEGKNYVVQDGDIIFFKFNV 388 (392)
T ss_pred HCCCEEEEEECHHHHHHCCCHHHHHHCCCEEECCCCEEEECCCEEEEEEEC
T ss_conf 308478998439999872989999874883403883386269789999726
No 3
>TIGR00092 TIGR00092 GTP-binding protein YchF; InterPro: IPR004396 This is a family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined . This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and a C-terminal domain composed of a six-stranded half-barrel curved around an alpha helix. The central and C-terminal domains are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; GO: 0005525 GTP binding.
Probab=100.00 E-value=0 Score=931.48 Aligned_cols=367 Identities=57% Similarity=0.905 Sum_probs=354.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEE-EEEEEEEEECCCCCC
Q ss_conf 9824867528887888999987404898736668674488337997685558777642186502-335799985122354
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDL-VPTRMSFVDIAGLVR 79 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~-~p~~i~~iDvaGLv~ 79 (367)
|.+++||||||||||||||||+|.++.+++|||||||||||.|+|.|||+|+|+|+++++|.|. +|++++|+||||||+
T Consensus 1 Mnl~aGIVGLpNVGKSTlF~AiT~~~~ge~ANYPFaTIePn~g~V~vpd~RLd~La~i~k~~k~evptt~~fvDIAGLvk 80 (390)
T TIGR00092 1 MNLKAGIVGLPNVGKSTLFNAITNLQLGEAANYPFATIEPNTGVVNVPDPRLDKLAEIYKPEKVEVPTTLEFVDIAGLVK 80 (390)
T ss_pred CCCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCEEECCEEEEEEEECCCCC
T ss_conf 98876530068760557999998266777668887651676444625885333477640642041140489986223410
Q ss_pred CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q ss_conf 322246632899998730374788501234542113457767321578898888764332224-------5777778752
Q gi|254780226|r 80 GASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLE-------RLFEKNKKYR 152 (367)
Q Consensus 80 gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~le-------k~~~k~~k~~ 152 (367)
|||+|+|||||||+|||++|+|+||||||.|++|+||+|++||++|+++|+.||+++|++.++ +++.|.+|..
T Consensus 81 GAS~GeGLGN~FLanIReVd~I~hVVRCF~d~~I~HV~G~VDPV~D~evI~~EL~LaDle~~~~~~E~~~~~i~~~~k~a 160 (390)
T TIGR00092 81 GASKGEGLGNQFLANIREVDAICHVVRCFEDDDIIHVEGKVDPVRDLEVINNELILADLEFVEKILERLEKRIGKVKKKA 160 (390)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 00157872334431032033104788633077358851751762326888888888889999999999999999740423
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCC-CHHHHHHHHHHHH
Q ss_conf 032046777899999889988758741034431326777621023576410100100343011101-0134678778864
Q gi|254780226|r 153 NHKSEEIVLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKK-GNIYTEAVQRLAS 231 (367)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~-~n~~~e~i~~l~~ 231 (367)
+.+++..+.+..+|++++.+|+++.+++.....|+.+|.+.+++++|||+||+||++|++|.|+.+ .|.|...+.+++.
T Consensus 161 ~~~DK~~K~E~~lL~~~~~~L~~g~~~~~~~dhl~~~E~~~iks~~lLT~KP~l~~~NVsE~D~~~~~N~~~~~~~e~~~ 240 (390)
T TIGR00092 161 KEGDKEAKEELALLEKILEGLENGQMVRHVGDHLTEEELKIIKSLNLLTAKPILYLANVSEDDLVNLDNKYLLRVKEIAA 240 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCHHHHHHHEEECCCHHCCCCCCCHHHHHHHHHHH
T ss_conf 10037788889999999999863884331023458889999986221210014054316811003678837899999997
Q ss_pred --HCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC-------CCCC-CHHHHHHHHHHHCCCEEEECCCCCCCCCEECCC
Q ss_conf --369840332100246655288426778877538-------8742-289999999987296466105787545401278
Q gi|254780226|r 232 --QQNAEMIIISAAIEAEISQLPEEERALFMEELD-------ISIS-GLELLIRSGYRLLDLITYFTVGPKETRAWTIPR 301 (367)
Q Consensus 232 --~~~~~~i~isa~~E~ei~~l~~ee~~e~l~~~~-------l~~t-gl~~li~~~~~lL~li~~~tvg~~e~~aw~i~~ 301 (367)
+.+..++++||.+|.+|++|+.+++.+|+++++ ++.. ||+++|+++|++|+|+||||+||+|+|||||++
T Consensus 241 ~~~~~~~~~~vsa~~E~~L~eL~~~~~~~f~~~lgdtnvsdql~~~sgL~~~I~~~y~~LnL~sfFT~G~~EVRaWti~~ 320 (390)
T TIGR00092 241 KQKPGDKVIPVSAALESELSELDDEERQDFLKELGDTNVSDQLQEVSGLNRVIRAMYKLLNLISFFTCGPQEVRAWTIRK 320 (390)
T ss_pred HCCCCCEEEEEEHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHCCEEEECCCCCHHEECCHHH
T ss_conf 23899728886687888874388642479998605664024331010015899999998287243316861012014020
Q ss_pred CCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCC---CHHHHHHCCCEECCCCEEEECCCCEEEEECC-C
Q ss_conf 6767785110012103483699973688877449---9688887496531576079654988999637-9
Q gi|254780226|r 302 GTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMG---GENAAKEAGKARDEGKEYIVKDGDILHFRFN-V 367 (367)
Q Consensus 302 GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~---~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~fn-v 367 (367)
|+|||+|||+|||||.||||+|+|++|+|+++++ |+.+||++|++|.+||||+|+||||++|||| |
T Consensus 321 G~~APqAAG~IH~Dfe~gFI~aevi~yedl~~~~PPl~~~~aK~~Gl~r~~GK~Y~v~dgDv~~F~~~~~ 390 (390)
T TIGR00092 321 GTTAPQAAGVIHTDFEKGFIRAEVISYEDLIEMKPPLSEQGAKEAGLIRLEGKDYIVQDGDVLLFRFNAV 390 (390)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEEEECCC
T ss_conf 4751467745301532387368986301233228898857886721355615630311640111220269
No 4
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=860.90 Aligned_cols=366 Identities=58% Similarity=0.906 Sum_probs=354.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCC-CCEEEEEEEEEEECCCCCC
Q ss_conf 982486752888788899998740489873666867448833799768555877764218-6502335799985122354
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAE-SKDLVPTRMSFVDIAGLVR 79 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~-~~~~~p~~i~~iDvaGLv~ 79 (367)
|+++|||||||||||||||||||. +.+++|||||||||||+|+++|||+|+..|+++++ |+|.+|+.++|+|||||||
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT~-~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALTK-AGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEEEEEEEECCCCC
T ss_conf 984267741898858889999974-8964248985426577327964736789998753899747761048998245378
Q ss_pred CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---H
Q ss_conf 3222466328999987303747885012345421134577673215788988887643322245777778752032---0
Q gi|254780226|r 80 GASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHK---S 156 (367)
Q Consensus 80 gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~---~ 156 (367)
|||+|+|||||||+|||++|||+||||||+++|++|++|++||++||++|+.||++||+++++|+|+|..|..+.+ +
T Consensus 80 GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~k~~k~a~~~~~~~ 159 (372)
T COG0012 80 GASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLD 159 (372)
T ss_pred CCCCCCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 85468886478787655148589999853898654787883927779999999999999999999999998875066237
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHH-HHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 4677789999988998875874103-443132677762102357641010010034301110101346787788643698
Q gi|254780226|r 157 EEIVLLQSIISSSLRLIEEGKPVRS-LLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNA 235 (367)
Q Consensus 157 ~~~~~~~~~l~~~~~~Le~~~~~r~-~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~ 235 (367)
+....+.+.+.....+|+++.+.+. ....|+++++..+++++|+|.|||+|++|++|.+.++.|.+.+++++++...++
T Consensus 160 k~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~ 239 (372)
T COG0012 160 KELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELAAKENA 239 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999888789999820022027744589999999887656404986999977765431116999999997665089
Q ss_pred CCCCCCCHHHHHHHHCCC-HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCEECCCCCCHHHHHHCCCC
Q ss_conf 403321002466552884-2677887753887422899999999872964661057875454012786767785110012
Q gi|254780226|r 236 EMIIISAAIEAEISQLPE-EERALFMEELDISISGLELLIRSGYRLLDLITYFTVGPKETRAWTIPRGTNAQKAAGVIHT 314 (367)
Q Consensus 236 ~~i~isa~~E~ei~~l~~-ee~~e~l~~~~l~~tgl~~li~~~~~lL~li~~~tvg~~e~~aw~i~~GstA~d~A~~IHt 314 (367)
+++++||++|.+|+.+++ +++.+|+..+++.++|++++++++|.+|||++|||+|++|.||||+++|+||+|+||.|||
T Consensus 240 ~vv~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti~~g~kap~aaG~Ih~ 319 (372)
T COG0012 240 EVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDGSKAPDAAGVIHP 319 (372)
T ss_pred CEEEEEHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 59994189999998574632235687743844667889999874655577897326875999984368853454776040
Q ss_pred HHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEEEECCC
Q ss_conf 10348369997368887744996888874965315760796549889996379
Q gi|254780226|r 315 DFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILHFRFNV 367 (367)
Q Consensus 315 Di~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~fnv 367 (367)
||.+|||+|++++|.|+++++|+..||++|++|++||||+|||||||||||||
T Consensus 320 Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~Fk~~~ 372 (372)
T COG0012 320 DFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHFKFNV 372 (372)
T ss_pred CHHHCCCCCEEEEHHHHHHCCCHHHHHHHCCEEECCCCCEECCCCEEEEEECC
T ss_conf 53222455567649999862748999882620121664261479789998249
No 5
>KOG1491 consensus
Probab=100.00 E-value=0 Score=758.26 Aligned_cols=365 Identities=48% Similarity=0.768 Sum_probs=341.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 98248675288878889999874048987366686744883379976855587776421865023357999851223543
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
|.+|+||||+|||||||||||+|. +.+..+||||||||||.+.|.|||.|++.||..|+|+..+||.++++||||||||
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~-~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491 19 NNLKIGIVGLPNVGKSTFFNALTK-SKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHC-CCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCC
T ss_conf 764025751798746889999860-7988567874025634112226825889998852876612335789862123567
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---
Q ss_conf 22246632899998730374788501234542113457767321578898888764332224577777875203204---
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSE--- 157 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~--- 157 (367)
||+|+||||+||+|||.||+|+||||||++++++|++|.+||++|+++|..||.+||++.++++|+++.|..+....
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k~~e~~~k~~~~~~~~~~ 177 (391)
T KOG1491 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEKRLEKLEKKHKRTKSNLE 177 (391)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 64576740777776552031168887417653000058888225289999999996888888888777666532567677
Q ss_pred --HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHC-CCHHHHHHHHHHHHHC-
Q ss_conf --677789999988998875874103443132677762102357641010010034301110-1013467877886436-
Q gi|254780226|r 158 --EIVLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCK-KGNIYTEAVQRLASQQ- 233 (367)
Q Consensus 158 --~~~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~-~~n~~~e~i~~l~~~~- 233 (367)
..+.+..++.++++.|.+++........|+++++..+++++++|+||++|++|++|.|.. ++|.+...+++|..+.
T Consensus 178 ~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~dy~r~knk~l~~i~~w~~~~~ 257 (391)
T KOG1491 178 TKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEHDYARKKNKKLPKIKEWVDEVS 257 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88777777679999999860488876310058778899887633303866999836865026677787766544564148
Q ss_pred -CCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCEECCCCCCHHHHHHCC
Q ss_conf -9840332100246655288426778877538874228999999998729646610578754540127867677851100
Q gi|254780226|r 234 -NAEMIIISAAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDLITYFTVGPKETRAWTIPRGTNAQKAAGVI 312 (367)
Q Consensus 234 -~~~~i~isa~~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL~li~~~tvg~~e~~aw~i~~GstA~d~A~~I 312 (367)
+..+++.|+.+|..+..+++||+.+++++++.+ ++|.++|.++|..|+||+|||+|++|+++|+|++|++|++||++|
T Consensus 258 ~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~-s~L~~iI~~~~~~L~li~fFt~G~~eV~~WtIr~gt~ap~aagvi 336 (391)
T KOG1491 258 PGDVVIVFSAAFESQLFELYEEEAVKELEDLGDS-SALPKIIKTGYSALNLIVFFTCGEDEVRAWTIRKGTKAPQAAGVI 336 (391)
T ss_pred CCCEEEEEHHHHHHHHHCCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHCCEEEEEECCCHHEEEEHHHCCCCCCCCCEE
T ss_conf 8873887429998776214878999998745653-303599999998637357884077541010265136563236603
Q ss_pred CCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEEEECCC
Q ss_conf 1210348369997368887744996888874965315760796549889996379
Q gi|254780226|r 313 HTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILHFRFNV 367 (367)
Q Consensus 313 HtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~fnv 367 (367)
||||.+|||.|++.+|+|+..++|+.++|.+|+.|++||+|+|+|||||+||||+
T Consensus 337 hsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGDIi~FK~~~ 391 (391)
T KOG1491 337 HSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGDIIFFKFNP 391 (391)
T ss_pred EEHHHHHCCCCCEEEEEHHHHHCCHHHHHHHCCHHHCCCEEEECCCCEEEEEECC
T ss_conf 2024440300332553367774578899873012013740352589789986069
No 6
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=0 Score=730.39 Aligned_cols=333 Identities=31% Similarity=0.506 Sum_probs=265.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC----CCHHHHHHH-----HHCCCCEEEEEEEEE
Q ss_conf 98248675288878889999874048987366686744883379976----855587776-----421865023357999
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV----PDPRMHKLA-----EIAESKDLVPTRMSF 71 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v----~d~~~~~l~-----~~~~~~~~~p~~i~~ 71 (367)
|+|||||||+|||||||||||||+ +.+++||||||||+||+|++.| ||.|++.++ .|.+++|++| ++|
T Consensus 1 M~lk~GIVGLPNvGKSTlFnaLT~-~~~~~aNyPF~TIePn~Gi~~v~v~~pd~~l~~~~~~~~~~~~~~~~~vp--ie~ 77 (396)
T PRK09602 1 MMIQIGLVGKPNVGKSTFFSAATL-ADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGVRFIP--VEL 77 (396)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEE--EEE
T ss_conf 983488888999988999999977-99864589988877843625233688436665430654221357733655--899
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 851223543222466328999987303747885012345421---13457767321578898888764332224577777
Q gi|254780226|r 72 VDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKDENI---IHVEGRIDPINDIETIETELMLSDLERLERLFEKN 148 (367)
Q Consensus 72 iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v---~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~ 148 (367)
+||||||+|||+|+|||||||+|||+||||+||||||++++. +|..|++||++|+++|+.||++||+++++++|+|.
T Consensus 78 vDIAGLVkGAS~GeGLGNkFLs~IRevDaI~hVVr~~~~~d~e~~~~~~g~~DP~~DieiI~~EL~laDl~~lek~~~r~ 157 (396)
T PRK09602 78 IDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDVKFLENEIDMWIYGILEKNWEKL 157 (396)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87555676501168760899998872687999975358866656526678869077899999999999999987668989
Q ss_pred HHHHCCCHHHHHHH-HHH-------HHHHHHHHHC-CCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCC
Q ss_conf 87520320467778-999-------9988998875-87410344313267776210235764101001003430111010
Q gi|254780226|r 149 KKYRNHKSEEIVLL-QSI-------ISSSLRLIEE-GKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKG 219 (367)
Q Consensus 149 ~k~~~~~~~~~~~~-~~~-------l~~~~~~Le~-~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~ 219 (367)
.|..+.+++..... ... ...+...+++ +.+.+ ...|++++...+..++++|.||++|++|++|.+..+.
T Consensus 158 ~k~~k~~~~~~~~~~~e~l~~l~~~~~~v~~~l~~~~~~~~--~~~~~~ee~~~l~~~~llt~KP~iyv~N~~D~~~~~~ 235 (396)
T PRK09602 158 SRKAQAEKFDLEEALAEQLSGLGISEEHVKEALRELGLPED--PSKWSEEDLLKFARELRKISKPMVIAANKADLPEAEE 235 (396)
T ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHH
T ss_conf 99987057538999999974035469999999986588766--0207988999999987874187899987534323168
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHH---------------------HCCCHHHH------HHHHHCCCCCCCHHH
Q ss_conf 134678778864369840332100246655---------------------28842677------887753887422899
Q gi|254780226|r 220 NIYTEAVQRLASQQNAEMIIISAAIEAEIS---------------------QLPEEERA------LFMEELDISISGLEL 272 (367)
Q Consensus 220 n~~~e~i~~l~~~~~~~~i~isa~~E~ei~---------------------~l~~ee~~------e~l~~~~l~~tgl~~ 272 (367)
+ ++.+ .+.+..++++||..|..+. +++++|+. +||+++| .+|+++
T Consensus 236 ~-----~~~l-~~~~~~vi~~sa~~E~~l~~~~~~~~i~~~~~~~~~e~~~~l~e~e~~~L~~i~e~l~~~g--~tgl~~ 307 (396)
T PRK09602 236 N-----IERL-KEKDYIVVPTSAEAELALRRAAKAGLIKYIPGDSDFEILGKLSEKQKKALEYIREVLEKYG--GTGVQE 307 (396)
T ss_pred H-----HHHH-HHCCCCEEEECHHHHHHHHHHHHCCCEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHC--CCCHHH
T ss_conf 9-----9998-7348857750189899998766544400056603667764017888989999999998707--332899
Q ss_pred HH-HHHHHHCCCEEEECCCCCCCC-----------CEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHH
Q ss_conf 99-999987296466105787545-----------401278676778511001210348369997368887744996888
Q gi|254780226|r 273 LI-RSGYRLLDLITYFTVGPKETR-----------AWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAA 340 (367)
Q Consensus 273 li-~~~~~lL~li~~~tvg~~e~~-----------aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~ 340 (367)
++ +++|++|+||+|||++ +|++ ||||++||||+|+||+|||||+||||||.. |
T Consensus 308 ~i~~~~y~lL~Litfft~e-~e~~wT~~~g~~~P~AWtik~GstA~~aAG~IHsDfekGFIrA~~--------------a 372 (396)
T PRK09602 308 AINTAVFDLLDMIVVYPVE-DENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGKGFLYAID--------------A 372 (396)
T ss_pred HHHHHHHHHCCCEEEECCC-CEEEECCCCCCCCCCEEEECCCCCHHHHHHHCCHHHHHCCHHHHH--------------C
T ss_conf 9999999862986883377-224402567761543267348992698876051166544188875--------------0
Q ss_pred HHCCCEECCCCEEEECCCCEEEEE
Q ss_conf 874965315760796549889996
Q gi|254780226|r 341 KEAGKARDEGKEYIVKDGDILHFR 364 (367)
Q Consensus 341 k~~g~~r~~Gkdy~v~DGDVi~~~ 364 (367)
|. .|++||||+|||||||||.
T Consensus 373 k~---~~r~GKdYiV~DGDIi~I~ 393 (396)
T PRK09602 373 RT---KRRIGEDYELKDGDVIKIV 393 (396)
T ss_pred CC---CCEECCCEEECCCCEEEEE
T ss_conf 00---4640796276179889996
No 7
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=0 Score=637.41 Aligned_cols=274 Identities=58% Similarity=0.914 Sum_probs=265.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG 84 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G 84 (367)
|||||+|||||||||||||+ +.++++|||||||+||+|+|+|||+|+++|+++++|+|++||+++|+||||||+|||+|
T Consensus 1 ~GivGlpnvGKstlFnalT~-~~~~~~nypf~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvDIaGLvkgAs~G 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTK-AGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CCEECCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 95647899988999999977-99874589977726805899677565889987317765123578998546556775236
Q ss_pred CCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 66328999987303747885012345421134577673215788988887643322245777778752032046777899
Q gi|254780226|r 85 EGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQS 164 (367)
Q Consensus 85 ~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~~ 164 (367)
+|||||||+|||+||||+||||||+|++|+||+|++||++|+++|++||++||+++++|+++|.+|..+.++++...+.+
T Consensus 80 eGLGN~FL~~Ir~vDai~hVVR~F~d~~I~Hv~g~vDP~rDieiI~~ELiLaDLe~vEKrlekl~K~~k~~dk~~~~e~~ 159 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGDKEAKAELE 159 (274)
T ss_pred CCCCHHHHHHHHHCCEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 76508999998734634653211157730178999797999999999999999999999999988775047777899999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 99988998875874103443132677762102357641010010034301110101346787788643698403321002
Q gi|254780226|r 165 IISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAAI 244 (367)
Q Consensus 165 ~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~ 244 (367)
++++++++|++++++|.. +|++++..++++++|||+||++||+|++|.+..+++.+..++..++...+..++++||++
T Consensus 160 ~L~ki~~~Le~g~~~r~~--~~~~ee~~~i~~l~LLT~KPviyV~Nv~E~d~~~~~~~~~~~~~~~~~~~~~~I~isaki 237 (274)
T cd01900 160 LLEKIKEHLEEGKPARSL--ELTEEEIEILNSLQLLTAKPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKI 237 (274)
T ss_pred HHHHHHHHHHCCCCHHCC--CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCHHHHHHHHHHHCCCCCEEEEEHHH
T ss_conf 999999998679810205--689889999986316533875999978867743662889999999766899099978999
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 4665528842677887753887422899999999872
Q gi|254780226|r 245 EAEISQLPEEERALFMEELDISISGLELLIRSGYRLL 281 (367)
Q Consensus 245 E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL 281 (367)
|.||++|+++|+.+||+++|+++||++++|+++|++|
T Consensus 238 E~Ei~~L~~eE~~efL~~lGl~esgL~~lIr~~Y~lL 274 (274)
T cd01900 238 EAELAELDEEEAAEFLEELGLEESGLDRLIRAGYELL 274 (274)
T ss_pred HHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 9999679999999999982998313889999998549
No 8
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=100.00 E-value=0 Score=556.52 Aligned_cols=280 Identities=30% Similarity=0.426 Sum_probs=226.9
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE----EECCCHHHHHHH-----HHCCCCEEEEEEEEEEECC
Q ss_conf 8675288878889999874048987366686744883379----976855587776-----4218650233579998512
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE----VAVPDPRMHKLA-----EIAESKDLVPTRMSFVDIA 75 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~----~~v~d~~~~~l~-----~~~~~~~~~p~~i~~iDva 75 (367)
||||||||||||||||||| ++.+++||||||||+||+|+ ++|||+|++.+| .|.+|+|++| ++|+|||
T Consensus 1 iGiVGlPNvGKSTlFnAlT-~~~~~~anyPF~TIePN~Gv~~v~v~~p~~~l~~~~~~~~~~~~~~~r~vP--ve~vDIA 77 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAAT-LADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVP--VELIDVA 77 (318)
T ss_pred CCEECCCCCCHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEECC--EEEEECH
T ss_conf 9344889898899999997-799851279966767741620055688416664330433120147740033--2675210
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 235432224663289999873037478850123454---21134577673215788988887643322245777778752
Q gi|254780226|r 76 GLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKDE---NIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYR 152 (367)
Q Consensus 76 GLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~---~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~ 152 (367)
|||||||+|+|||||||+|||+|||||||||||+++ +++|+.|++||++|++||+.||++||+++++++|+|..|..
T Consensus 78 GLV~GAskG~GLGNkFL~~iRe~DaiihVVd~sg~td~eg~~~~~g~~DP~~Die~I~~EL~lw~l~~l~k~~~k~~r~~ 157 (318)
T cd01899 78 GLVPGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA 157 (318)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01056645776659999999847889998504788678876477899596888999999999999999999999988887
Q ss_pred CCCHHHHHH-HHHHH-------HHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHH
Q ss_conf 032046777-89999-------9889988758741034431326777621023576410100100343011101013467
Q gi|254780226|r 153 NHKSEEIVL-LQSII-------SSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTE 224 (367)
Q Consensus 153 ~~~~~~~~~-~~~~l-------~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e 224 (367)
+...+.... +...+ ..+...+++...... +..|+++++..+.++++++.|||+|||||+|.+....|...
T Consensus 158 ~~~~~~~~~~l~e~lsgl~~~~~~v~~~l~~~~~~~~-~~~w~~ee~~~l~~~~l~~~KP~i~vaNk~D~~~~~~~~~~- 235 (318)
T cd01899 158 DAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPED-LSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISK- 235 (318)
T ss_pred HHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHH-
T ss_conf 6046538999999872036469999999985468887-22189999999999999863887999743446662105889-
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHC---------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCC
Q ss_conf 877886436984033210024665528---------8426778877538874228999999998729646610578754
Q gi|254780226|r 225 AVQRLASQQNAEMIIISAAIEAEISQL---------PEEERALFMEELDISISGLELLIRSGYRLLDLITYFTVGPKET 294 (367)
Q Consensus 225 ~i~~l~~~~~~~~i~isa~~E~ei~~l---------~~ee~~e~l~~~~l~~tgl~~li~~~~~lL~li~~~tvg~~e~ 294 (367)
+.+ ...+..++++||+.|.+|..+ +++..++++++.++++.+++++.. +..+.|.+|+|+|.+|.
T Consensus 236 -~~~--k~~~~~vV~~sA~~E~~L~~a~~~g~I~y~~gd~~f~~l~e~gL~e~~~~~L~~--i~~~~L~ty~ttGVqev 309 (318)
T cd01899 236 -LRL--KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITDELGLSEKQKEALES--IRDEVLDRFGSTGVQEA 309 (318)
T ss_pred -HHH--HCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HHHHHHHHHCCCCHHHH
T ss_conf -998--667984665129999999999876773248886422112567989999999999--99967788567009999
No 9
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=0 Score=335.51 Aligned_cols=287 Identities=29% Similarity=0.405 Sum_probs=204.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
+++|||+|||||||++|+|| ++.+++|.|||||.+|..|+....+ |+||++|+||||+||+.
T Consensus 65 ~v~lVGfPsvGKStLL~~LT-nt~seva~y~FTTl~~vPG~l~Y~g-----------------a~IQild~Pgii~gas~ 126 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLT-NTKSEVADYPFTTLEPVPGMLEYKG-----------------AQIQLLDLPGIIEGASS 126 (365)
T ss_pred EEEEECCCCCCHHHHHHHHH-CCCCCCCCCCCEECCCCCCEEEECC-----------------CEEEEECCCCCCCCCCC
T ss_conf 89997688745899998876-8876434567410244574475478-----------------16999727631257656
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHH-
Q ss_conf 466328999987303747885012345421134577673215788988887643322245777778-752032046777-
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNK-KYRNHKSEEIVL- 161 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~-k~~~~~~~~~~~- 161 (367)
|+|+|+|+|+.+|+||++|.|+|+|.+. ..++.|+.||.-.-. ++.++-.... +....+...+..
T Consensus 127 g~grG~~vls~~R~ADlIiiVld~~~~~------------~~~~~i~~ELe~~GI-rlnk~~p~V~I~kk~~gGI~i~~t 193 (365)
T COG1163 127 GRGRGRQVLSVARNADLIIIVLDVFEDP------------HHRDIIERELEDVGI-RLNKRPPDVTIKKKESGGIRINGT 193 (365)
T ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCH------------HHHHHHHHHHHHCCE-EECCCCCCEEEEEECCCCEEEECC
T ss_conf 8887646546521588899997168882------------488999999985676-821799965999952598798045
Q ss_pred ---HHHHHHHHHHHHHCCCC---CHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf ---89999988998875874---103443132677762102357641010010034301110101346787788643698
Q gi|254780226|r 162 ---LQSIISSSLRLIEEGKP---VRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNA 235 (367)
Q Consensus 162 ---~~~~l~~~~~~Le~~~~---~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~ 235 (367)
..-....+...|.+-.. .-.+.++.+-|++.-.-.-+ ...+|.++++||.|... .+.+..+... .
T Consensus 194 ~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~n-rvY~p~l~v~NKiD~~~------~e~~~~l~~~--~ 264 (365)
T COG1163 194 GPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGN-RVYKPALYVVNKIDLPG------LEELERLARK--P 264 (365)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHC-CEEEEEEEEEECCCCCC------HHHHHHHHHC--C
T ss_conf 4566689999999999728363069994688689999998416-21323689995255668------7889999734--5
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCC----CCCCCCEECCCCCCHHHHHHC
Q ss_conf 4033210024665528842677887753887422899999999872964661057----875454012786767785110
Q gi|254780226|r 236 EMIIISAAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDLITYFTVG----PKETRAWTIPRGTNAQKAAGV 311 (367)
Q Consensus 236 ~~i~isa~~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL~li~~~tvg----~~e~~aw~i~~GstA~d~A~~ 311 (367)
+.+++||.. .-+++.+....|+.|++|++||-- |+-+++..+++|||..|+|.+
T Consensus 265 ~~v~isa~~----------------------~~nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~ 322 (365)
T COG1163 265 NSVPISAKK----------------------GINLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRK 322 (365)
T ss_pred CEEEEECCC----------------------CCCHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHH
T ss_conf 628986556----------------------8798899999998748189984589998888898587279809999999
Q ss_pred CCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEEEE
Q ss_conf 01210348369997368887744996888874965315760796549889996
Q gi|254780226|r 312 IHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILHFR 364 (367)
Q Consensus 312 IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~ 364 (367)
||+||.+.|.||.| |...+ |..|+ ++|.||+|.|+||++|-
T Consensus 323 IH~~l~~~FryA~V--WGkSv--------k~~~Q--rVG~dHvLeD~DIV~I~ 363 (365)
T COG1163 323 IHRDLVENFRYARV--WGKSV--------KHPGQ--RVGLDHVLEDEDIVEIH 363 (365)
T ss_pred HHHHHHHHCCEEEE--ECCCC--------CCCCC--CCCCCCCCCCCCEEEEE
T ss_conf 98999974556789--64677--------87964--42766470477758996
No 10
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=100.00 E-value=1.6e-39 Score=286.17 Aligned_cols=224 Identities=27% Similarity=0.355 Sum_probs=154.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
++||||+||||||||||+||+ +.++++||||||++|+.|++.+++ ++++++|+||+++|||+
T Consensus 2 ~V~LVG~PN~GKSTLln~LT~-a~~~v~~ypfTT~~pi~g~~~~~~-----------------~~iqlvDtPGli~~a~~ 63 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTN-TKSEVAAYEFTTLTCVPGVLEYKG-----------------AKIQLLDLPGIIEGAAD 63 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCEEEEEEECC-----------------EEEEEEECCCCCCCCCC
T ss_conf 599999999999999999978-995436989787574777999899-----------------89999967300246333
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCC------
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777--8752032------
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKN--KKYRNHK------ 155 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~--~k~~~~~------ 155 (367)
|+|+||+||+.+|+||+++||||++ +|..+++.+..||..+... +.+...+. ++....+
T Consensus 64 g~g~g~~~l~~~r~aD~il~VvD~~------------~~~~~~~~i~~eLe~~gi~-l~~~~~~v~i~~~~~~gi~i~~~ 130 (233)
T cd01896 64 GKGRGRQVIAVARTADLILMVLDAT------------KPEGHREILERELEGVGIR-LNKRPPNITIKKKKKGGINITST 130 (233)
T ss_pred CCCHHHHHHHHHHHCCEEEEEEECC------------CCHHHHHHHHHHHHHHCCC-CCCCCCCCEEEEECCCCEEEECC
T ss_conf 3206899999987589999998479------------8266789999999860511-03578762577713586786045
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 04677789999988998875874103443132677762102357641010010034301110101346787788643698
Q gi|254780226|r 156 SEEIVLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNA 235 (367)
Q Consensus 156 ~~~~~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~ 235 (367)
.+........+...+....-....-.+..+++.|+..-.-.-++ ..||+++|+||.|.... +.+.++. ...
T Consensus 131 ~~~~~~~~~~v~~il~e~~i~~a~v~i~~~~t~dd~~d~i~~n~-~y~P~i~V~NKiDl~~~------ee~~~~~--~~~ 201 (233)
T cd01896 131 VPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNR-VYIPCLYVYNKIDLISI------EELDLLA--RQP 201 (233)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCC-CCCCEEEEEECCCCCCH------HHHHHHH--CCC
T ss_conf 66666888999999998276764378605788889899873576-76737999974036998------9999864--679
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 403321002466552884267788775388742289999999987296466105
Q gi|254780226|r 236 EMIIISAAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDLITYFTV 289 (367)
Q Consensus 236 ~~i~isa~~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL~li~~~tv 289 (367)
+++++||. +..|++.|..+.|+.|++|+|||-
T Consensus 202 ~~i~ISA~----------------------~g~gld~L~~~I~~~L~liRvytK 233 (233)
T cd01896 202 NSVVISAE----------------------KGLNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred CEEEEECC----------------------CCCCHHHHHHHHHHHHCCEEEECC
T ss_conf 85999888----------------------898989999999998396899559
No 11
>PRK12296 obgE GTPase ObgE; Reviewed
Probab=100.00 E-value=4.1e-38 Score=276.77 Aligned_cols=165 Identities=32% Similarity=0.549 Sum_probs=126.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.+||||+||+|||||.+++| ++.++||||||||+.||.|++.+.|. ++.+.||||||+|||+
T Consensus 161 DVGLvG~PNaGKSTLl~~iS-~AkpkIA~YpFTTL~PnLGvv~~~d~-----------------~f~iADiPGLIeGAs~ 222 (495)
T PRK12296 161 DVGLVGFPSAGKSSLISAIS-AAKPKIADYPFTTLVPNLGVVSAGDH-----------------TFTVADVPGLIPGASE 222 (495)
T ss_pred CCCEECCCCCCHHHHHHHHH-CCCCCCCCCCCCCCCCEEEEEECCCC-----------------EEEEEECCCCCCCCCC
T ss_conf 31101189996158998875-48876578775545754678970795-----------------2899856643465003
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
|+|||.+||.||..|-+|+||||++..+ ...||++|++.|+.||...+-+
T Consensus 223 g~GLG~~FLRHieR~~vL~hviD~~~~e------~~rDP~~d~~~I~~EL~~Y~~~------------------------ 272 (495)
T PRK12296 223 GRGLGLDFLRHIERCAVLVHVVDCATLE------PGRDPISDIDALEAELAAYTPT------------------------ 272 (495)
T ss_pred CCCCHHHHHHHHHHCCEEEEEEECCCCC------CCCCHHHHHHHHHHHHHHCCHH------------------------
T ss_conf 8984399999875254799999688766------6789699999999999971914------------------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 99998899887587410344313267776210235764101001003430111010134678778864369840332100
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAA 243 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~ 243 (367)
|.. ...+.-|..||.++|+||+|...++. ..+.+++.....+.+++++||.
T Consensus 273 ---------l~~------------------~~~~~~L~erpqIVvlNKiDlp~a~e--~~e~~~~~l~~~g~~Vf~ISA~ 323 (495)
T PRK12296 273 ---------LQG------------------DAGLGDLAERPRLVVLNKIDVPDARE--LAEFVRPELEERGWPVFEVSTV 323 (495)
T ss_pred ---------HHC------------------CCCCCCCCCCCEEEEEECCCCCCHHH--HHHHHHHHHHHCCCCEEEEECC
T ss_conf ---------304------------------43323210196599996656757699--9999999998749957998641
Q ss_pred HH
Q ss_conf 24
Q gi|254780226|r 244 IE 245 (367)
Q Consensus 244 ~E 245 (367)
..
T Consensus 324 t~ 325 (495)
T PRK12296 324 TR 325 (495)
T ss_pred CC
T ss_conf 00
No 12
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=100.00 E-value=9.5e-39 Score=281.04 Aligned_cols=115 Identities=42% Similarity=0.737 Sum_probs=97.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.|||||+||||||||+|++| +|.++||||||||+.||.|+|++.|.+. .-++-+.||||||+|||+
T Consensus 160 DVGLvGfPNAGKSTLLs~~S-~AkPKiAdYPFTTL~P~LGvv~~~~~~Y-------------~~~fviADIPGLIEGAs~ 225 (296)
T TIGR02729 160 DVGLVGFPNAGKSTLLSAIS-NAKPKIADYPFTTLEPNLGVVRVDDNKY-------------ERSFVIADIPGLIEGASE 225 (296)
T ss_pred EEEEECCCCCCHHHHHHHHH-CCCCEECCCCCCCCCCCEEEEEECCCCE-------------EEEEEEEECCCCHHHHHC
T ss_conf 02103578874688888876-2788223878745653112898748741-------------688999856861566626
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 466328999987303747885012345421134577673215788988887
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELM 134 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~ 134 (367)
|+|||-|||.||.+|-+|+||||+++. .+- ....-||++|++.|+.||-
T Consensus 226 G~GLG~~FLKHIERt~~L~hviD~~~~-qlS-kh~~~~p~~~y~~l~~EL~ 274 (296)
T TIGR02729 226 GKGLGHKFLKHIERTRLLLHVIDASGI-QLS-KHDGRDPIEDYETLRNELE 274 (296)
T ss_pred CCCCCHHHHHHHHHEEEEEEEEECCCC-EEE-ECCCCCHHHHHHHHHHHHH
T ss_conf 887533554575202668879806875-342-4289888999999999997
No 13
>PRK12297 obgE GTPase ObgE; Reviewed
Probab=100.00 E-value=6.7e-38 Score=275.32 Aligned_cols=172 Identities=37% Similarity=0.569 Sum_probs=135.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.+||||+||+|||||++++| ++.++||||||||+.||.|++.+++. ..+.+.|+||||+|||+
T Consensus 160 DVGLvG~PNaGKSTll~~is-~A~pkIa~YpFTTl~P~lGvv~~~~~----------------~~~~iADiPGLIeGA~~ 222 (429)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVS-NAKPKIANYHFTTLVPNLGVVETDDG----------------RSFVMADLPGLIEGASE 222 (429)
T ss_pred CCCEEECCCCCHHHHHHHHH-CCCCCCCCCCCCCCCCEEEEEEECCC----------------CEEEEEECCCCCCCCCC
T ss_conf 76336479984578998875-48975578774025766668985698----------------66999626745677446
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
|+|||.+||.||.+|.+|+||||+++.+ ..||++|++.|+.||..++-+
T Consensus 223 g~GLG~~FLrHieR~~~L~hviD~s~~~-------~~dp~~d~~~i~~EL~~y~~~------------------------ 271 (429)
T PRK12297 223 GVGLGHQFLRHIERTRVIVHVIDMSGSE-------GRDPIEDYETINKELKKYNLR------------------------ 271 (429)
T ss_pred CCCCCHHHHHHHHHCCEEEEEEECCCCC-------CCCHHHHHHHHHHHHHHHCHH------------------------
T ss_conf 8886688888766246799999787877-------779899999999999986898------------------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 99998899887587410344313267776210235764101001003430111010134678778864369840332100
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAA 243 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~ 243 (367)
+..||.++|+||+|...++.+ .+.+++... .+.+++.+||.
T Consensus 272 ------------------------------------L~~kp~ivv~NK~Dl~~~~~~--~~~~~~~~~-~~~~i~~iSa~ 312 (429)
T PRK12297 272 ------------------------------------LLERPQIIVANKMDLPEAEEN--LEEFKEKLA-KGKKVFPISAL 312 (429)
T ss_pred ------------------------------------HHCCCEEEEEECCCCCCHHHH--HHHHHHHHH-CCCCEEEEECC
T ss_conf ------------------------------------726966999976458576999--999999753-46978999684
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf 24665528842677887753887422899999999872964
Q gi|254780226|r 244 IEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDLI 284 (367)
Q Consensus 244 ~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL~li 284 (367)
. ..|++.++...+++|.-.
T Consensus 313 t----------------------~egl~~l~~~i~~~l~~~ 331 (429)
T PRK12297 313 T----------------------KQGLDELLYAIAELLEKT 331 (429)
T ss_pred C----------------------CCCHHHHHHHHHHHHHHC
T ss_conf 4----------------------519999999999999857
No 14
>PRK12298 obgE GTPase ObgE; Reviewed
Probab=100.00 E-value=1.3e-36 Score=266.60 Aligned_cols=174 Identities=31% Similarity=0.493 Sum_probs=133.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.+||||+||+|||||++++| .+.++||+|||||+.||.|++.+++.+ .+.+.||||||+|||+
T Consensus 161 DVGLvG~PNAGKSTll~~iS-~AkPKIAdYpFTTL~PnLGvV~~~~~~----------------~fviADIPGLIeGAs~ 223 (380)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVS-AAKPKVADYPFTTLVPNLGVVRVDDER----------------SFVIADIPGLIEGAAE 223 (380)
T ss_pred CCCEEECCCCCCHHHHHHHH-CCCCCCCCCCCCCCCCEEEEEEECCCC----------------EEEEEECCCCCCCCCC
T ss_conf 65146369886108998855-589754788753368746799946986----------------6999877755577555
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
|+|||.+||.||.+|.+|+||||++..+ ..||++|+..|+.||...+-+
T Consensus 224 G~GLG~~FLrHieRt~~LlhviD~s~~~-------~~dp~~~~~~i~~EL~~Y~~~------------------------ 272 (380)
T PRK12298 224 GAGLGIRFLKHLERCRVLLHLIDIAPID-------GSDPVENARIIVNELEKYSPK------------------------ 272 (380)
T ss_pred CCCHHHHHHHHHHHHCEEEEEEECCCCC-------CCCHHHHHHHHHHHHHHHCHH------------------------
T ss_conf 8772899999987535899999688777-------519999999999999985976------------------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCC--CCCCCCC
Q ss_conf 99998899887587410344313267776210235764101001003430111010134678778864369--8403321
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQN--AEMIIIS 241 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~--~~~i~is 241 (367)
+..||.++|+||+|....+ ...+.++++....+ .+++++|
T Consensus 273 ------------------------------------L~~kp~iiv~NK~Dl~~~~--e~~~~~~~~~~~~~~~~~v~~IS 314 (380)
T PRK12298 273 ------------------------------------LAEKPRWLVFNKIDLLDEE--EAEERAKEIVEALGWEGPVYLIS 314 (380)
T ss_pred ------------------------------------HCCCCEEEEEECCCCCCHH--HHHHHHHHHHHHCCCCCCEEEEE
T ss_conf ------------------------------------6059879999885489979--99999999999708888879997
Q ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 00246655288426778877538874228999999998729646
Q gi|254780226|r 242 AAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDLIT 285 (367)
Q Consensus 242 a~~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL~li~ 285 (367)
|. +..|++.|+....++|+-..
T Consensus 315 A~----------------------tgeG~~~L~~~i~~~l~~~~ 336 (380)
T PRK12298 315 AA----------------------SGEGTKELCWDLMTFIEENP 336 (380)
T ss_pred CC----------------------CCCCHHHHHHHHHHHHHHCC
T ss_conf 87----------------------68799999999999998672
No 15
>PRK12299 obgE GTPase ObgE; Reviewed
Probab=100.00 E-value=3.3e-36 Score=263.86 Aligned_cols=168 Identities=35% Similarity=0.601 Sum_probs=133.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.+||||+||+|||||+|++| .+.++||||||||+.||+|++.++|. .++.+.|+||||+|||+
T Consensus 160 DVgLVG~PNaGKSTLl~~is-~A~pkIa~YpFTTl~P~lGvv~~~d~----------------~~~~iaDiPGlIegA~~ 222 (334)
T PRK12299 160 DVGLVGLPNAGKSTLISSVS-AAKPKIADYPFTTLHPNLGVVRVDDY----------------KSFVIADIPGLIEGASE 222 (334)
T ss_pred CCEEEECCCCCHHHHHHHHH-CCCCCCCCCCCEECCCEEEEEEECCC----------------CEEEEEECCCCCCCCCC
T ss_conf 30146369874669999876-47643357873003875479994688----------------67899866743355234
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
|+|||.+||.||.+|++|+||||++.+ ||++|++.|..||...+
T Consensus 223 g~GLG~~FLrHieR~~~L~~viD~s~~----------d~~~~~~~l~~EL~~y~-------------------------- 266 (334)
T PRK12299 223 GAGLGHRFLKHIERTRLLLHLVDASSE----------DPVEDYKTIRNELEKYS-------------------------- 266 (334)
T ss_pred CCCCHHHHHHHHHHCCEEEEEEECCCC----------CHHHHHHHHHHHHHHHH--------------------------
T ss_conf 777478998766534369999979988----------98999999999999850--------------------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 99998899887587410344313267776210235764101001003430111010134678778864369840332100
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAA 243 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~ 243 (367)
. .+..||.++|+||+|....+ ...+.++++....+.+++++||.
T Consensus 267 ------------------------~----------~L~~Kp~ivvlNK~Dl~~~~--~~~~~~~~~~~~~~~~v~~ISA~ 310 (334)
T PRK12299 267 ------------------------P----------ELADKPRILVLNKIDLLDEE--ERKEKIKELIKALGGPVFLISAV 310 (334)
T ss_pred ------------------------H----------HHCCCCEEEEEECCCCCCHH--HHHHHHHHHHHHCCCCEEEEECC
T ss_conf ------------------------6----------55369879999881068856--78999999998709968999787
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 246655288426778877538874228999999998729
Q gi|254780226|r 244 IEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLD 282 (367)
Q Consensus 244 ~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL~ 282 (367)
. ..|++.|++..+++|+
T Consensus 311 ~----------------------g~Gl~eL~~~i~~~L~ 327 (334)
T PRK12299 311 T----------------------GEGLDELLRALWEFLK 327 (334)
T ss_pred C----------------------CCCHHHHHHHHHHHHH
T ss_conf 7----------------------8499999999999999
No 16
>pfam06071 YchF-GTPase_C Protein of unknown function (DUF933). This domain is found at the C terminus of the YchF GTP-binding protein and is possibly related to the ubiquitin-like and MoaD/ThiS superfamilies.
Probab=100.00 E-value=1.5e-35 Score=259.49 Aligned_cols=84 Identities=71% Similarity=1.161 Sum_probs=83.5
Q ss_pred CEEEECCCCCCCCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEE
Q ss_conf 64661057875454012786767785110012103483699973688877449968888749653157607965498899
Q gi|254780226|r 283 LITYFTVGPKETRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILH 362 (367)
Q Consensus 283 li~~~tvg~~e~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~ 362 (367)
||+|||+||+|+||||+++|||||++||+|||||+||||||+|++|+|+++++|++++|++|++|+|||||+|+|||||+
T Consensus 1 LitffT~G~~EvRaWti~~G~~Ap~AAG~IHtDfekgFIrAEvi~~~d~~~~g~~~~~k~~Gk~r~eGKdYiv~DGDii~ 80 (84)
T pfam06071 1 LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDLIEYGSEAKAKEAGKLRLEGKDYIVQDGDIIH 80 (84)
T ss_pred CCCEECCCCCCEEEEECCCCCCCHHHCCCEECHHHHCCEEEEEECHHHHHHCCCHHHHHHCCCCCCCCCCEEEECCCEEE
T ss_conf 95275789980578772589823344373122222174898860899999849999998869725249814883697999
Q ss_pred EECC
Q ss_conf 9637
Q gi|254780226|r 363 FRFN 366 (367)
Q Consensus 363 ~~fn 366 (367)
||||
T Consensus 81 FkfN 84 (84)
T pfam06071 81 FRFN 84 (84)
T ss_pred EECC
T ss_conf 9669
No 17
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=100.00 E-value=3.3e-34 Score=250.44 Aligned_cols=106 Identities=44% Similarity=0.760 Sum_probs=94.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.+||||+||+|||||+|++| .+.+.||||||||+-||.|+|++.+ ..+ +-+-||||||+|||+
T Consensus 161 DVGLVG~PNaGKSTlls~vS-~AkPKIadYpFTTL~PnLGvV~~~~-----------~~s-----fv~ADIPGLIEGAs~ 223 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVS-AAKPKIADYPFTTLVPNLGVVRVDG-----------GES-----FVVADIPGLIEGASE 223 (369)
T ss_pred CCCCCCCCCCCHHHHHHHHH-HCCCCCCCCCCCCCCCCCCEEEECC-----------CCE-----EEEECCCCCCCCCCC
T ss_conf 11412589885798998886-0688544886530247530799648-----------860-----799347532356446
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETEL 133 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL 133 (367)
|+|||.+||.||..|.+|+||||++..+ ..||++|++.|+.||
T Consensus 224 G~GLG~~FLrHIERt~vL~hviD~s~~~-------~~dp~~~~~~i~~EL 266 (369)
T COG0536 224 GVGLGLRFLRHIERTRVLLHVIDLSPID-------GRDPIEDYQTIRNEL 266 (369)
T ss_pred CCCCCHHHHHHHHHHHEEEEEEECCCCC-------CCCHHHHHHHHHHHH
T ss_conf 8876388887888651547998567656-------779899999999999
No 18
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=100.00 E-value=9.8e-35 Score=253.96 Aligned_cols=83 Identities=66% Similarity=1.142 Sum_probs=82.4
Q ss_pred CEEEECCCCCCCCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEE
Q ss_conf 64661057875454012786767785110012103483699973688877449968888749653157607965498899
Q gi|254780226|r 283 LITYFTVGPKETRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILH 362 (367)
Q Consensus 283 li~~~tvg~~e~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~ 362 (367)
||+|||+||+|+||||+++|||||++||+|||||+||||||+|++|+|++++||++++|++|++|+|||||+|||||||+
T Consensus 1 LitffT~G~~E~RaWti~~G~~Ap~AAG~IHsDfekgFIrAEvi~~~d~i~~g~e~~ak~~Gk~r~eGKdYiv~DGDii~ 80 (83)
T cd04867 1 LISFFTAGPDEVRAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIF 80 (83)
T ss_pred CCCEECCCCCEEEEEECCCCCCCHHHCCEEHHHHHHCCEEEEECCHHHHHHCCCHHHHHHCCCCCCCCCEEEEECCCEEE
T ss_conf 95364579981388252589832454270624454443898860899999849999998859723328814883795999
Q ss_pred EEC
Q ss_conf 963
Q gi|254780226|r 363 FRF 365 (367)
Q Consensus 363 ~~f 365 (367)
|||
T Consensus 81 F~F 83 (83)
T cd04867 81 FKF 83 (83)
T ss_pred EEC
T ss_conf 969
No 19
>KOG1486 consensus
Probab=99.98 E-value=1.3e-32 Score=239.61 Aligned_cols=279 Identities=27% Similarity=0.422 Sum_probs=200.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
++.++|+|+||||||++.+| +..+++|+|.|||..--.|+....+ +.||++|+||+|+|||+
T Consensus 64 RValIGfPSVGKStlLs~iT-~T~SeaA~yeFTTLtcIpGvi~y~g-----------------a~IQllDLPGIieGAsq 125 (364)
T KOG1486 64 RVALIGFPSVGKSTLLSKIT-STHSEAASYEFTTLTCIPGVIHYNG-----------------ANIQLLDLPGIIEGASQ 125 (364)
T ss_pred EEEEECCCCCCHHHHHHHHH-CCHHHHHCCEEEEEEEECCEEEECC-----------------CEEEEECCCCCCCCCCC
T ss_conf 79996488744787888764-1102221102467873031687668-----------------34799627530002113
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCCCHHH
Q ss_conf 466328999987303747885012345421134577673215788988887643322245777778-----752032046
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNK-----KYRNHKSEE 158 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~-----k~~~~~~~~ 158 (367)
|+|+|.|..+..|.||.++.|+||...+ .+-+.++.|| +.+.-|+.|.+ +.++.+...
T Consensus 126 gkGRGRQviavArtaDlilMvLDatk~e------------~qr~~le~EL-----e~vGiRLNk~~Pniy~k~kk~gGi~ 188 (364)
T KOG1486 126 GKGRGRQVIAVARTADLILMVLDATKSE------------DQREILEKEL-----EAVGIRLNKRKPNIYFKKKKTGGIS 188 (364)
T ss_pred CCCCCCEEEEEEECCCEEEEEECCCCCH------------HHHHHHHHHH-----HHHCEECCCCCCCEEEEEECCCCEE
T ss_conf 7887726888740365899995177615------------6789999999-----9741341478997588874368767
Q ss_pred HHHH-------HHHHHHHHHHH---HCCCCCHHHHHHCCHH-HHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHH
Q ss_conf 7778-------99999889988---7587410344313267-77621023576410100100343011101013467877
Q gi|254780226|r 159 IVLL-------QSIISSSLRLI---EEGKPVRSLLESLDSD-AIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQ 227 (367)
Q Consensus 159 ~~~~-------~~~l~~~~~~L---e~~~~~r~~~~~~~~d-e~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~ 227 (367)
+... +.....++... +.+...| ++.+.| -+..+ +-++.. =|.+|+-||.|. .-.+++.
T Consensus 189 f~~T~plT~~~ek~i~~ILheykI~Naevl~R---ed~t~DdfIDvi-~gnr~Y-~~ClYvYnKID~------vs~eevd 257 (364)
T KOG1486 189 FNTTVPLTHCDEKLIYTILHEYKIHNAEVLFR---EDCTVDDFIDVI-EGNRVY-IKCLYVYNKIDQ------VSIEEVD 257 (364)
T ss_pred EEEEECCCCCCHHHHHHHHHHHEECCCEEEEE---CCCCHHHHHHHH-HCCCEE-EEEEEEEECCCE------ECHHHHH
T ss_conf 74240452354999999998874455138984---378668788887-456327-888899512442------0388888
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECC----CCCCCCCEECCCCC
Q ss_conf 88643698403321002466552884267788775388742289999999987296466105----78754540127867
Q gi|254780226|r 228 RLASQQNAEMIIISAAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDLITYFTV----GPKETRAWTIPRGT 303 (367)
Q Consensus 228 ~l~~~~~~~~i~isa~~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL~li~~~tv----g~~e~~aw~i~~Gs 303 (367)
+++... ..+++|..+. -+++.+....++.|+|.++||. -|+..++..+++|+
T Consensus 258 rlar~P--nsvViSC~m~----------------------lnld~lle~iWe~l~L~rvYtKk~G~~Pdfdd~~vlr~g~ 313 (364)
T KOG1486 258 RLARQP--NSVVISCNMK----------------------LNLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKGS 313 (364)
T ss_pred HHHCCC--CCEEEEECCC----------------------CCHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCEEEECCC
T ss_conf 986289--8589980344----------------------6889999999987410899824888999999853876797
Q ss_pred CHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEEEE
Q ss_conf 6778511001210348369997368887744996888874965315760796549889996
Q gi|254780226|r 304 NAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILHFR 364 (367)
Q Consensus 304 tA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~ 364 (367)
|..|++.+||.||..-|-||.|+.+. +|.- -.++|-.|.+.|-|||-+-
T Consensus 314 tve~~C~~iHr~l~~qfkyAlVWGtS----------~khs--PQrvgl~h~~~dEdvvqi~ 362 (364)
T KOG1486 314 TVEDVCHRIHRTLAAQFKYALVWGTS----------AKHS--PQRVGLGHTLEDEDVVQIV 362 (364)
T ss_pred CHHHHHHHHHHHHHHHHCEEEEECCC----------CCCC--CCEECCCCCCCCCCCEEEE
T ss_conf 29999999999999861032575245----------5638--6234364312555600033
No 20
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.98 E-value=1.4e-31 Score=232.75 Aligned_cols=176 Identities=53% Similarity=0.840 Sum_probs=138.0
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 75288878889999874048987366686744883379976855587776421865023357999851223543222466
Q gi|254780226|r 7 IIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKGEG 86 (367)
Q Consensus 7 lvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~G 86 (367)
|||.||||||||||++|+ ..+.++||||||.+|+.|.+..++ +.+++|+|+||+++++|++++
T Consensus 1 ivG~PNvGKSTL~N~Lt~-~~~~v~~~pgTTr~~~~g~~~~~~----------------~~~i~~~DtpGi~~~~~~~~~ 63 (176)
T cd01881 1 LVGLPNVGKSTLLNALTN-AKPKVANYPFTTLEPNLGVVEVPD----------------GARIQVADIPGLIEGASEGRG 63 (176)
T ss_pred CCCCCCCCHHHHHHHHHC-CCCEEECCCCCEEEEEEEEEEECC----------------CCEEEEEECCCCCCCCHHHHH
T ss_conf 969998889999999968-996030789967612467999479----------------966999957875457337878
Q ss_pred CHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 32899998730374788501234542113457767321578898888764332224577777875203204677789999
Q gi|254780226|r 87 LGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQSII 166 (367)
Q Consensus 87 lGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~~~l 166 (367)
++++||+++++||+++||||++.+.. .+..+|++|+++++.||..++....
T Consensus 64 ~~~~~l~~~~~~d~il~vvD~~~~~~----~~~~~~~~~~~~i~~el~~~~~~~~------------------------- 114 (176)
T cd01881 64 LGNQFLAHIRRADAILHVVDASEDDD----IGGVDPLEDYEILNAELKLYDLETI------------------------- 114 (176)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCC----CCCCCHHHHHHHHHHHHHHCCHHHH-------------------------
T ss_conf 99999987410889999998987655----4544589999999999997115665-------------------------
Q ss_pred HHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 98899887587410344313267776210235764101001003430111010134678778864369840332100246
Q gi|254780226|r 167 SSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAAIEA 246 (367)
Q Consensus 167 ~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~E~ 246 (367)
..++..||+++|+||.|....+. .............+.+++++||.
T Consensus 115 ------------------------------~~~~~~kp~i~v~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ii~iSA~--- 160 (176)
T cd01881 115 ------------------------------LGLLTAKPVIYVLNKIDLDDAEE-LEEELVRELALEEGAEVVPISAK--- 160 (176)
T ss_pred ------------------------------HHHHCCCCEEEEEECEECCCHHH-HHHHHHHHHHHCCCCCEEEEECC---
T ss_conf ------------------------------55432697199996860347003-15999999974689958999777---
Q ss_pred HHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 65528842677887753887422899999999872
Q gi|254780226|r 247 EISQLPEEERALFMEELDISISGLELLIRSGYRLL 281 (367)
Q Consensus 247 ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL 281 (367)
+..|++.|.+..+++|
T Consensus 161 -------------------~~~gi~~L~~~i~~~L 176 (176)
T cd01881 161 -------------------TEEGLDELIRAIYELL 176 (176)
T ss_pred -------------------CCCCHHHHHHHHHHHC
T ss_conf -------------------8879999999999659
No 21
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.96 E-value=4.4e-28 Score=209.14 Aligned_cols=168 Identities=38% Similarity=0.565 Sum_probs=125.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.|+|||.||||||||||++|+ +.+.+++|||||.+|+.|++..++ +.++.|+|.||++++||+
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~~-~~~~V~~~pgTT~~~~~g~i~~~~----------------~~~i~~~DtpGi~~~~~~ 64 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISN-AKPKIADYPFTTLVPNLGVVRVDD----------------GRSFVVADIPGLIEGASE 64 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHC-CCCEEECCCCCCCCCEEEEEEECC----------------CCEEEEECCCCCCCCCCC
T ss_conf 589989999989999999967-876032566652374477999369----------------856999648864445546
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
++|+|.+||.++.+||++++|||++.. .+|.++++.+..||.
T Consensus 65 ~~~l~~~~l~~i~~advil~vvD~~~~---------~~~~~~~~~i~~~l~----------------------------- 106 (170)
T cd01898 65 GKGLGHRFLRHIERTRLLLHVIDLSGD---------DDPVEDYKTIRNELE----------------------------- 106 (170)
T ss_pred CCCHHHHHHHCCCCCCEEEEEEECCCC---------CCHHHHHHHHHHHHH-----------------------------
T ss_conf 622489998613345617999989987---------898999999999999-----------------------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHH-HCCCCCCCCCC
Q ss_conf 99998899887587410344313267776210235764101001003430111010134678778864-36984033210
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLAS-QQNAEMIIISA 242 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~-~~~~~~i~isa 242 (367)
..+. .+..||+++|+||.|... .+...+...++.. ..+.+++++||
T Consensus 107 ---------------------~~~~----------~~~~kp~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~vi~iSA 153 (170)
T cd01898 107 ---------------------LYNP----------ELLEKPRIVVLNKIDLLD--EEELFELLKELLKELWGKPVFPISA 153 (170)
T ss_pred ---------------------HHCH----------HHHCCCCEEEEEHHHCCC--HHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf ---------------------8274----------440386506776202428--3563899999998569995899975
Q ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 024665528842677887753887422899999999872
Q gi|254780226|r 243 AIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLL 281 (367)
Q Consensus 243 ~~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL 281 (367)
. +..|++.|.++.+++|
T Consensus 154 ~----------------------~g~gi~~L~~~I~~~L 170 (170)
T cd01898 154 L----------------------TGEGLDELLRKLAELL 170 (170)
T ss_pred C----------------------CCCCHHHHHHHHHHHC
T ss_conf 4----------------------7979999999999669
No 22
>KOG1489 consensus
Probab=99.96 E-value=7.9e-29 Score=214.16 Aligned_cols=159 Identities=31% Similarity=0.542 Sum_probs=121.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.+||||+||+||||++||+| .+.+.+|.|||||+.|++|.+...| +-++.+.|+||||+|||.
T Consensus 198 dvGLVG~PNAGKSTLL~als-~AKpkVa~YaFTTL~P~iG~v~ydd----------------f~q~tVADiPGiI~GAh~ 260 (366)
T KOG1489 198 DVGLVGFPNAGKSTLLNALS-RAKPKVAHYAFTTLRPHIGTVNYDD----------------FSQITVADIPGIIEGAHM 260 (366)
T ss_pred CCCEECCCCCCHHHHHHHHH-CCCCCCCCCCEEEECCCCCEEECCC----------------CCEEEECCCCCCCCCCCC
T ss_conf 54321289886788987764-0587545542034446411251354----------------514685047653445434
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
+||||-+||.||..|+.|+.|||++.-.. .+|.++++.|..||-+
T Consensus 261 nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~~ELe~---------------------------- 305 (366)
T KOG1489 261 NKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLIEELEL---------------------------- 305 (366)
T ss_pred CCCCCHHHHHHHHHHCEEEEEEECCCCCC-------CCHHHHHHHHHHHHHH----------------------------
T ss_conf 67654899998875334899997787555-------8878999999999999----------------------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHC-CCCCCCCCC
Q ss_conf 9999889988758741034431326777621023576410100100343011101013467877886436-984033210
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQ-NAEMIIISA 242 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~-~~~~i~isa 242 (367)
.++ -++.||.++||||.|.+.+..+. +++++.+- +..++++||
T Consensus 306 ---------yek-----------------------~L~~rp~liVaNKiD~~eae~~~----l~~L~~~lq~~~V~pvsA 349 (366)
T KOG1489 306 ---------YEK-----------------------GLADRPALIVANKIDLPEAEKNL----LSSLAKRLQNPHVVPVSA 349 (366)
T ss_pred ---------HHH-----------------------HHCCCCEEEEEECCCCHHHHHHH----HHHHHHHCCCCCEEEEEE
T ss_conf ---------865-----------------------42358538997446736678889----999998737981787640
Q ss_pred HHHHHHHH
Q ss_conf 02466552
Q gi|254780226|r 243 AIEAEISQ 250 (367)
Q Consensus 243 ~~E~ei~~ 250 (367)
+.+..+.+
T Consensus 350 ~~~egl~~ 357 (366)
T KOG1489 350 KSGEGLEE 357 (366)
T ss_pred CCCCCHHH
T ss_conf 04645688
No 23
>KOG1487 consensus
Probab=99.94 E-value=9.7e-28 Score=206.80 Aligned_cols=279 Identities=24% Similarity=0.351 Sum_probs=187.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
+||++|+|++||||+.+-+|+ ...+++.|.|||.---.|+.+ +-.++||+.|+||+|+||..
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g-~~s~vasyefttl~~vpG~~~-----------------y~gaKiqlldlpgiiegakd 122 (358)
T KOG1487 61 RVGFVGFPSVGKSTLLSKLTG-TFSEVAAYEFTTLTTVPGVIR-----------------YKGAKIQLLDLPGIIEGAKD 122 (358)
T ss_pred EEEEEECCCCCHHHHHHHHCC-CCCCCCCCCCEEEEEECCEEE-----------------CCCCCEEEECCCCHHCCCCC
T ss_conf 553785376662433223018-887655433226897066674-----------------04562343048540014646
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCCCHHH
Q ss_conf 466328999987303747885012345421134577673215788988887643322245777778-----752032046
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNK-----KYRNHKSEE 158 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~-----k~~~~~~~~ 158 (367)
|+|+|.|+++..|.|..|+.|+|+- -|+..-..||.||. -+.-|+.+.. +.+..+...
T Consensus 123 gkgrg~qviavartcnli~~vld~~------------kp~~hk~~ie~ele-----g~girlnk~pp~i~~kkKdkgGIn 185 (358)
T KOG1487 123 GKGRGKQVIAVARTCNLIFIVLDVL------------KPLSHKKIIEKELE-----GFGIRLNKQPPNIGTKKKDKGGIN 185 (358)
T ss_pred CCCCCCEEEEEEECCCEEEEEEECC------------CCCCHHHHHHHHHH-----CCEEECCCCCCCCCCCCCCCCCEE
T ss_conf 7887607888830165899871106------------75217889987631-----036661488997630124447430
Q ss_pred HHH---HHHHHHHHHHH---HHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHH
Q ss_conf 777---89999988998---875874103443132677762102357641010010034301110101346787788643
Q gi|254780226|r 159 IVL---LQSIISSSLRL---IEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQ 232 (367)
Q Consensus 159 ~~~---~~~~l~~~~~~---Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~ 232 (367)
... ........+.. -+.+..+|. +-+.|++.-..+.++.+ =|.+|+.|+.|. ++.|++.- .-
T Consensus 186 lt~~~LdlD~~rsil~eyR~hsAdi~Lr~---DaT~DdLIdvVegnr~y-Vp~iyvLNkIds------ISiEELdi--i~ 253 (358)
T KOG1487 186 LTGTHLDLDLQRSILSEYRIHSADIALRF---DATADDLIDVVEGNRIY-VPCIYVLNKIDS------ISIEELDI--IY 253 (358)
T ss_pred EECCHHHHHHHHHHHHHHHHCCHHEEEEC---CCCHHHHHHHHCCCCEE-EEEEEEECCCCE------EEEECCCE--EE
T ss_conf 01320027889999887643102305635---76422243220057315-665556222350------12101320--11
Q ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCC----CCCCCEEC-CCCCCHHH
Q ss_conf 69840332100246655288426778877538874228999999998729646610578----75454012-78676778
Q gi|254780226|r 233 QNAEMIIISAAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDLITYFTVGP----KETRAWTI-PRGTNAQK 307 (367)
Q Consensus 233 ~~~~~i~isa~~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL~li~~~tvg~----~e~~aw~i-~~GstA~d 307 (367)
.....+++||..+ =.++.+.....+.|+|...||--. +-...-.+ ..-+|..|
T Consensus 254 ~iphavpISA~~~----------------------wn~d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~sv~d 311 (358)
T KOG1487 254 TIPHAVPISAHTG----------------------WNFDKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRSVED 311 (358)
T ss_pred ECCCEEECCCCCC----------------------CCHHHHHHHHHHCCHHEEEECCCCCCCCCCCCCCEECCCCCCHHH
T ss_conf 0563245245666----------------------556788988730600248853888999888877466677654999
Q ss_pred HHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEEE
Q ss_conf 51100121034836999736888774499688887496531576079654988999
Q gi|254780226|r 308 AAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILHF 363 (367)
Q Consensus 308 ~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~~ 363 (367)
+|.+||+++.+-|-||.| |...+++ .. ..+|++|++.|.||+.+
T Consensus 312 fc~~ih~~~~~~fk~alv--wg~s~kh--------~p--q~vg~~h~l~dedvv~i 355 (358)
T KOG1487 312 FCNKIHKSILKQFKYALV--WGSSVKH--------NP--QRVGKEHVLEDEDVVQI 355 (358)
T ss_pred HHHHHHHHHHHHHHHHEE--ECCCCCC--------CH--HHCCHHHEECCCHHHHH
T ss_conf 999999999986324057--4245676--------82--01353326133104452
No 24
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.89 E-value=5.1e-22 Score=168.23 Aligned_cols=87 Identities=33% Similarity=0.585 Sum_probs=71.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.|+|||.||||||||||+||+ +.+.+++|||||.+|+.+.+..++. .++.|+|.||++.+-.
T Consensus 43 ~VaivG~PNvGKSTLlN~L~g-~~~~v~~~~~tT~d~~~~~i~~~~~----------------~~i~l~DT~G~i~~~p- 104 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTG-ADVYAEDQLFATLDPTTRRLRLPDG----------------REVLLTDTVGFIRDLP- 104 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCCEEECCCCCCCCCEEEEEEECCC----------------CEEEEEECCCCCCCCC-
T ss_conf 799988999989999999948-9963415677645763668995699----------------7799983686446783-
Q ss_pred CCCCHHHH---HHHHHCCCEEEEEECCCC
Q ss_conf 46632899---998730374788501234
Q gi|254780226|r 84 GEGLGNQF---LAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~F---L~~ir~aDalihVVdaf~ 109 (367)
.++-..| |.++++||+++||||++.
T Consensus 105 -~~lie~~~~tle~i~~AD~il~vvD~s~ 132 (204)
T cd01878 105 -HQLVEAFRSTLEEVAEADLLLHVVDASD 132 (204)
T ss_pred -HHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf -7899999999999973989999997998
No 25
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.87 E-value=3.3e-21 Score=162.74 Aligned_cols=164 Identities=23% Similarity=0.328 Sum_probs=110.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.|.|||.||||||||||+||+ +.+.+++|||||.+++.|.+...+ .+++|+|.||++..+++
T Consensus 2 ~VaivG~pNvGKStL~N~L~g-~~~~v~~~p~TTr~~~~~~~~~~~-----------------~~~~liDTpGi~~~~~~ 63 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTR-AKPEVAPYPFTTKSLFVGHFDYKY-----------------LRWQVIDTPGLLDRPLE 63 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCCEECCCCCCCCCCEEEEEEECC-----------------CEEEEECCCCCCCCCHH
T ss_conf 799988999889999999958-986023758723574368999837-----------------27687248865567478
Q ss_pred CCC-CHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 466-32899998730-3747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 84 GEG-LGNQFLAHIRE-VDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 84 G~G-lGN~FL~~ir~-aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
.++ +..+....+++ +|++++|+|++...+ .+.++ .
T Consensus 64 ~~~~ie~~~~~~l~~~~d~il~viD~~~~~~--------~~~~~------------------~----------------- 100 (168)
T cd01897 64 ERNTIEMQAITALAHLRAAVLFLFDPSETCG--------YSLEE------------------Q----------------- 100 (168)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCCC--------CCHHH------------------H-----------------
T ss_conf 8889999999999835776899996887678--------48999------------------9-----------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
..++.. ++. ....||+++|+||.|.-..+ ......++....+.+++++|
T Consensus 101 -~~l~~~-------------------------i~~--~~~~~p~i~v~NK~Dl~~~~---~~~~~~~~~~~~~~~vi~IS 149 (168)
T cd01897 101 -LSLFEE-------------------------IKP--LFKNKPVIVVLNKIDLLTFE---DLSEIEEEEELEGEEVLKIS 149 (168)
T ss_pred -HHHHHH-------------------------HHH--HHCCCCEEEEEECCCCCCCC---CHHHHHHHHHCCCCCEEEEE
T ss_conf -999998-------------------------776--52588879999475345810---07999999970899889998
Q ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 0024665528842677887753887422899999999872
Q gi|254780226|r 242 AAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLL 281 (367)
Q Consensus 242 a~~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL 281 (367)
|. +..|++.|.++.+++|
T Consensus 150 A~----------------------~g~Gi~~L~~~i~ell 167 (168)
T cd01897 150 TL----------------------TEEGVDEVKNKACELL 167 (168)
T ss_pred CC----------------------CCCCHHHHHHHHHHHC
T ss_conf 15----------------------8969999999999963
No 26
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.86 E-value=4.5e-21 Score=161.85 Aligned_cols=91 Identities=27% Similarity=0.406 Sum_probs=76.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
++||.|+|+||||||||||++|+...+-+++|||||.++..|.+...+ .+++++|.||+...+
T Consensus 1 ~~~ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~~~~-----------------~~i~l~DTpG~~~~~ 63 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG-----------------IPVRLIDTAGIRETE 63 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEEECC-----------------EEEEEEECCCCCCCC
T ss_conf 979999889999899999999689733432889847863267895399-----------------889997267754445
Q ss_pred CCCCCCH-HHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632-899998730374788501234
Q gi|254780226|r 82 SKGEGLG-NQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlG-N~FL~~ir~aDalihVVdaf~ 109 (367)
+.-+..| .+.+..+.+||.++||+|++.
T Consensus 64 ~~~e~~~~~~~~~~i~~aDlil~vvD~~~ 92 (157)
T cd04164 64 DEIEKIGIERAREAIEEADLVLFVIDASR 92 (157)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 78999999999863015767999988987
No 27
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.84 E-value=2.9e-20 Score=156.43 Aligned_cols=87 Identities=36% Similarity=0.601 Sum_probs=75.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.++|||+||+||||+||+||+ +.+.++|+||+|.||+.+.+..|+. -++-++|..|.|..-
T Consensus 191 ~ValVGYTNAGKSTL~n~Lt~-~~~~~~d~lFaTLd~t~r~~~l~~~----------------~~~ll~DTVGFI~~L-- 251 (351)
T TIGR03156 191 TVALVGYTNAGKSTLFNALTG-ADVYAADQLFATLDPTTRRLDLPDG----------------GEVLLTDTVGFIRDL-- 251 (351)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCCCCCCCEEECCCCCCEEECCCC----------------CEEEEEECCCHHHHC--
T ss_conf 699966788778999999851-7764103431353673204887999----------------769998150056308--
Q ss_pred CCCCHHHH---HHHHHCCCEEEEEECCCC
Q ss_conf 46632899---998730374788501234
Q gi|254780226|r 84 GEGLGNQF---LAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~F---L~~ir~aDalihVVdaf~ 109 (367)
-..|...| |.+++.||.|+||||+|.
T Consensus 252 P~~Li~aF~sTLee~~~aDlllhVvD~S~ 280 (351)
T TIGR03156 252 PHELVAAFRATLEEVREADLLLHVVDASD 280 (351)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_conf 86799999999999985989999805888
No 28
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=9.4e-20 Score=152.94 Aligned_cols=91 Identities=26% Similarity=0.368 Sum_probs=74.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
+++|+|+|.||||||||||++|+...+.++++|+||.++..+.....+ .++.++|.||+.+..
T Consensus 2 ~~~V~ivG~pN~GKSTL~N~l~g~~~~~vs~~pgtTr~~~~~~~~~~~-----------------~~~~~vDtpGi~~~~ 64 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG-----------------KKYTLIDTAGIRRKG 64 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEEEECC-----------------EEEEEEECCCCCCCC
T ss_conf 989999989999899999998389844434999915733289999999-----------------889998578842134
Q ss_pred CCCCCCH----HHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632----899998730374788501234
Q gi|254780226|r 82 SKGEGLG----NQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlG----N~FL~~ir~aDalihVVdaf~ 109 (367)
+...++. .+.++.+++||++++|||++.
T Consensus 65 ~~~~~~e~~~~~~~~~~i~~~dvil~viDa~~ 96 (174)
T cd01895 65 KVEEGIEKYSVLRTLKAIERADVVLLVIDATE 96 (174)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 42106889999999999984286589975898
No 29
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.83 E-value=7e-20 Score=153.80 Aligned_cols=86 Identities=34% Similarity=0.528 Sum_probs=70.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCC--CCC
Q ss_conf 486752888788899998740489873666867448833799768555877764218650233579998512235--432
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLV--RGA 81 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv--~gA 81 (367)
+|+|||+||||||||||++|| +.+.++|+||||.++..|.+...+ .++.|+|.||+. ...
T Consensus 1 tVaIvG~PNvGKSTLlN~L~g-~~~~Vs~~pGtTrd~~~~~~~~~~-----------------~~~~lvDTpGi~~~~~~ 62 (188)
T pfam02421 1 TIALVGNPNVGKTTLFNALTG-ARQHVGNWPGVTVEKKEGTFKYKG-----------------YEIEIVDLPGTYSLSPY 62 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHC-CCCEEECCCCCCCCEEEEEEEECC-----------------EEEEEEECCCCCCCCCC
T ss_conf 989988999899999999959-996563899972333576875251-----------------67999968885014653
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 224663289999873037478850123
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
+..++...+++.. .+||++++|||+.
T Consensus 63 ~~~e~v~~~~~~~-~~aDlvl~vvDa~ 88 (188)
T pfam02421 63 SEEEKVARDYLLE-EKPDVIINVVDAT 88 (188)
T ss_pred CHHHHHHHHHHHH-CCCCCEEEEEECC
T ss_conf 2789999999862-3687369997676
No 30
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.83 E-value=1.1e-19 Score=152.38 Aligned_cols=91 Identities=30% Similarity=0.404 Sum_probs=74.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
+..|+|+|.||||||||||+||+...+.++++|+||.+|..|+....+ .++.|+|.||+....
T Consensus 3 ~~~V~ivG~pN~GKSsL~N~L~~~~~a~vs~~~gtTr~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD-----------------AQIIFVDTPGIHKPK 65 (168)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCEEEEEECC-----------------EEEEEEECCCCCCCH
T ss_conf 868999999999999999999589703323889826344236898499-----------------789999589866514
Q ss_pred CC-CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 22-46632899998730374788501234
Q gi|254780226|r 82 SK-GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~-G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
+. +..+..+++..+.+||++++|+|+..
T Consensus 66 ~~~~~~~~~~~~~~l~~~D~il~vvD~~~ 94 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASE 94 (168)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 56778999999986513655899997898
No 31
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.83 E-value=1.2e-19 Score=152.16 Aligned_cols=87 Identities=22% Similarity=0.237 Sum_probs=77.2
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 75288878889999874048987366686744883379976855587776421865023357999851223543222466
Q gi|254780226|r 7 IIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKGEG 86 (367)
Q Consensus 7 lvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~G 86 (367)
|||.||||||||||+||+...+.++++|+||.+|+.+.+...+. .++.|+|.||+....+.++.
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~----------------~~i~lvDtpG~~~~~~~~~~ 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPL----------------GPVVLIDTPGIDEAGGLGRE 64 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCC----------------CEEEEEECCCCCCCCCHHHH
T ss_conf 91979989999999995899610169899865645899995478----------------65999727985222310168
Q ss_pred CHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 32899998730374788501234
Q gi|254780226|r 87 LGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 87 lGN~FL~~ir~aDalihVVdaf~ 109 (367)
+..++++.++++|++++|||+..
T Consensus 65 ~~~~~~~~~~~~D~il~viD~~~ 87 (163)
T cd00880 65 REELARRVLERADLILFVVDADL 87 (163)
T ss_pred HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 99999999986898999987899
No 32
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.83 E-value=9e-20 Score=153.08 Aligned_cols=83 Identities=35% Similarity=0.575 Sum_probs=69.2
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCC--CCCCCCC
Q ss_conf 75288878889999874048987366686744883379976855587776421865023357999851223--5432224
Q gi|254780226|r 7 IIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGL--VRGASKG 84 (367)
Q Consensus 7 lvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGL--v~gA~~G 84 (367)
|||.||||||||||++|+ +.+.+++|||||.+|..|.+.+.+ .++.|+|.||+ .++.+..
T Consensus 1 ivG~pNvGKSTL~N~L~g-~~~~vs~~pgtTrd~~~~~~~~~~-----------------~~~~lvDtpGi~~~~~~~~~ 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALTG-ARQKVGNWPGVTVEKKEGRFKLGG-----------------KEIEIVDLPGTYSLSPYSED 62 (158)
T ss_pred CCCCCCCCHHHHHHHHHC-CCCEECCCCCCEEEEEEEEEEECC-----------------EEEEEEECCCCCCCCCCCHH
T ss_conf 979898889999999959-986461789827634788996299-----------------37999979874125641356
Q ss_pred CCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 663289999873037478850123
Q gi|254780226|r 85 EGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 85 ~GlGN~FL~~ir~aDalihVVdaf 108 (367)
++....++.. +++|.+++|+|++
T Consensus 63 e~i~~~~~~~-~~~d~vl~vvD~~ 85 (158)
T cd01879 63 EKVARDFLLG-EKPDLIVNVVDAT 85 (158)
T ss_pred HHHHHHHHHH-CCCCCEEEEEECC
T ss_conf 7899999985-1787179997774
No 33
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=4.9e-19 Score=148.11 Aligned_cols=87 Identities=31% Similarity=0.369 Sum_probs=70.9
Q ss_pred EEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 67528887888999987404898736668674488337997685558777642186502335799985122354322246
Q gi|254780226|r 6 GIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKGE 85 (367)
Q Consensus 6 GlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~ 85 (367)
.|+|.||||||||||++|+...+.++++|+||.+++.|.+...+ .++.|+|.||+......-.
T Consensus 1 aivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~-----------------~~~~lvDTpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG-----------------REFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECC-----------------EEEEEEECCCCCCCCCHHH
T ss_conf 90489998899999999588753540799935667899999999-----------------8899985787555660678
Q ss_pred C-CHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 6-32899998730374788501234
Q gi|254780226|r 86 G-LGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 86 G-lGN~FL~~ir~aDalihVVdaf~ 109 (367)
. +-.+.+..+++||++++|+|+..
T Consensus 64 ~~~~~~~~~~i~~ad~il~viDa~~ 88 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDGRE 88 (157)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 9999999999986590799998999
No 34
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=99.79 E-value=2.8e-18 Score=143.02 Aligned_cols=92 Identities=29% Similarity=0.439 Sum_probs=76.9
Q ss_pred CCCE---EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCC
Q ss_conf 9824---8675288878889999874048987366686744883379976855587776421865023357999851223
Q gi|254780226|r 1 MGFK---CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 1 m~~k---iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGL 77 (367)
|++| |+|||+||||||||+|++++...+-+.+.|.||.++..|+....+ .++-|+|.||+
T Consensus 4 ~~~ksG~VaivG~PNvGKSTL~N~l~~~k~siVS~k~~TTR~~i~gi~~~~~-----------------~q~i~iDTpGi 66 (296)
T PRK00089 4 EKFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-----------------AQIIFVDTPGI 66 (296)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECC-----------------EEEEEEECCCC
T ss_conf 8983799999989998889999999689617614959987283899999799-----------------79999989986
Q ss_pred CCCCCC-CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 543222-46632899998730374788501234
Q gi|254780226|r 78 VRGASK-GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 78 v~gA~~-G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
....+. ++.+-.+.++.+.+||++++|+|++.
T Consensus 67 ~~~~~~l~~~~~~~~~~ai~~aDlil~viD~~~ 99 (296)
T PRK00089 67 HKPKRALNRAMNKAAWSSLKDVDLVLFVVDADE 99 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 674677878999999999975999999985788
No 35
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.75 E-value=1.5e-17 Score=138.13 Aligned_cols=92 Identities=34% Similarity=0.398 Sum_probs=78.9
Q ss_pred CC-CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCC
Q ss_conf 98-24867528887888999987404898736668674488337997685558777642186502335799985122354
Q gi|254780226|r 1 MG-FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVR 79 (367)
Q Consensus 1 m~-~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~ 79 (367)
|+ -.|.|||.||||||||||+||+...|-+++||=+|-|+.-|.+..-+ -++.++|.+||.+
T Consensus 1 m~~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~-----------------~~f~lIDTgGl~~ 63 (444)
T COG1160 1 MSTPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG-----------------REFILIDTGGLDD 63 (444)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEECC-----------------CEEEEEECCCCCC
T ss_conf 99778999899987589999887577026760699975577545069838-----------------6079997899776
Q ss_pred CC--CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 32--2246632899998730374788501234
Q gi|254780226|r 80 GA--SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 80 gA--~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
+. .-++-+-.|-+..+.+||++|.|||+-.
T Consensus 64 ~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~ 95 (444)
T COG1160 64 GDEDELQELIREQALIAIEEADVILFVVDGRE 95 (444)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 88128999999999999976799999984887
No 36
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.73 E-value=1.4e-16 Score=131.66 Aligned_cols=91 Identities=33% Similarity=0.399 Sum_probs=76.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 98248675288878889999874048987366686744883379976855587776421865023357999851223543
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
|+ .|.|||.||||||||||+|++...+-+++.|=||-|...|.+...+ .++.++|.||+...
T Consensus 1 ~p-~VaIvGrpNvGKStLfN~l~~~~~aIv~~~~G~TRD~~~~~~~~~~-----------------~~~~lvDT~G~~~~ 62 (438)
T PRK00093 1 KP-VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG-----------------REFIVIDTGGIDPG 62 (438)
T ss_pred CC-EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECC-----------------EEEEEEECCCCCCC
T ss_conf 99-8999899998789999998688618715989998471589999999-----------------28999989798988
Q ss_pred CCC--CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 222--46632899998730374788501234
Q gi|254780226|r 81 ASK--GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 81 A~~--G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
... .+-+=.|-+..+.+||++|+|||+..
T Consensus 63 ~~~~~~~~i~~q~~~ai~~aDlIlfVvD~~~ 93 (438)
T PRK00093 63 DEDGFEKQMREQALLAIEEADVILFVVDGRA 93 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 8207999999999999985899999983776
No 37
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.72 E-value=9.6e-19 Score=146.14 Aligned_cols=65 Identities=38% Similarity=0.540 Sum_probs=59.2
Q ss_pred CEEEECC----------C-CCCCCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCC
Q ss_conf 6466105----------7-8754540127867677851100121034836999736888774499688887496531576
Q gi|254780226|r 283 LITYFTV----------G-PKETRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGK 351 (367)
Q Consensus 283 li~~~tv----------g-~~e~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gk 351 (367)
||.+||| | .+.|+||++|+||||+|+|++||||++++||||+++++ |++|+
T Consensus 1 lI~VYPV~~~~~~t~~~g~nvlpD~~Lv~~Gst~~d~A~~ih~d~~~~fi~av~g~~------------------r~eg~ 62 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGRR------------------RLEGK 62 (76)
T ss_pred CCCEEECCCCCEECCCCCCEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCEE------------------EECCC
T ss_conf 943796366761027999858883699879897899999987677888998862537------------------95477
Q ss_pred EEEECCCCEEEEEC
Q ss_conf 07965498899963
Q gi|254780226|r 352 EYIVKDGDILHFRF 365 (367)
Q Consensus 352 dy~v~DGDVi~~~f 365 (367)
||+++|||||+|+.
T Consensus 63 d~~l~dgDIIkf~s 76 (76)
T cd04938 63 DVILGKNDILKFKT 76 (76)
T ss_pred CEEECCCCEEEEEC
T ss_conf 36607899999849
No 38
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.71 E-value=4.7e-18 Score=141.48 Aligned_cols=65 Identities=31% Similarity=0.576 Sum_probs=60.5
Q ss_pred CEEEECC----------CCCCCCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCE
Q ss_conf 6466105----------787545401278676778511001210348369997368887744996888874965315760
Q gi|254780226|r 283 LITYFTV----------GPKETRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKE 352 (367)
Q Consensus 283 li~~~tv----------g~~e~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkd 352 (367)
+|++||| |.+.|+|+++|+||||+|+||+||||||++|++|++++++ |++|+|
T Consensus 1 ~i~VyPV~de~k~~D~~G~vLPD~~llp~GsT~~DfAy~IHTdiG~~f~~Aida~~~-----------------r~v~~d 63 (76)
T cd01669 1 MIVVYPVEDENKLTDKEGNVLPDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDARTG-----------------RRVGED 63 (76)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECC-----------------CCCCCC
T ss_conf 901886576774277999998766880799948999999999987514011300058-----------------785887
Q ss_pred EEECCCCEEEEE
Q ss_conf 796549889996
Q gi|254780226|r 353 YIVKDGDILHFR 364 (367)
Q Consensus 353 y~v~DGDVi~~~ 364 (367)
|.|++||||+|-
T Consensus 64 ~~L~~gDvi~Iv 75 (76)
T cd01669 64 YELKHRDVIKIV 75 (76)
T ss_pred CCCCCCCEEEEE
T ss_conf 284799999980
No 39
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=3.2e-16 Score=129.15 Aligned_cols=89 Identities=30% Similarity=0.403 Sum_probs=73.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.|.|||.||||||||||+||+...+-+++.|=||-|.+.|.+..-+ .++.++|.||+.....+
T Consensus 1 ~VaIvGrpNVGKStLfN~L~~~~~aIv~~~~G~TRD~~~~~~~~~~-----------------~~~~liDT~G~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRKYGDAEWGG-----------------REFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEEECC-----------------EEEEEEECCCCCCCCHH
T ss_conf 9899999998789999998788617615989988773379999999-----------------07999989898987437
Q ss_pred -CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf -46632899998730374788501234
Q gi|254780226|r 84 -GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 -G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.+-+=+|-+..+.+||.+++|||+..
T Consensus 64 ~~~~~~~q~~~ai~~aDlIlfVvD~~~ 90 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGRE 90 (429)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 899999999999986799999985776
No 40
>PRK04213 GTP-binding protein; Provisional
Probab=99.70 E-value=3.4e-16 Score=128.92 Aligned_cols=86 Identities=27% Similarity=0.400 Sum_probs=63.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCC--C
Q ss_conf 98248675288878889999874048987366686744883379976855587776421865023357999851223--5
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGL--V 78 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGL--v 78 (367)
|| .|+|||.||||||||||+||+ +.+.++++|+||-++|..... ++-|+|+||+ .
T Consensus 1 ~P-~VaivGRpNVGKSTL~N~L~g-~k~~vs~~pg~Tr~~~~~~~~---------------------~~~~vDtPG~g~~ 57 (195)
T PRK04213 1 MP-EIIFVGRSNVGKSTLIRALTG-KKVRVGKRPGVTLKPNEYDWG---------------------DFILVDLPGFGFM 57 (195)
T ss_pred CC-EEEEECCCCCCHHHHHHHHHC-CCCCCCCCCCEEEEEEEEECC---------------------CEEEEECCCCCCC
T ss_conf 98-799976999889999999968-985134899648734588508---------------------8999999996222
Q ss_pred CCCCCCC--CCHHHHH----HHHHCCCEEEEEECCCC
Q ss_conf 4322246--6328999----98730374788501234
Q gi|254780226|r 79 RGASKGE--GLGNQFL----AHIREVDAIIHVLRCFK 109 (367)
Q Consensus 79 ~gA~~G~--GlGN~FL----~~ir~aDalihVVdaf~ 109 (367)
.|.+++. .++++.+ +.++++|.+++|||+..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvD~~~ 94 (195)
T PRK04213 58 SGVPKKVQERIKDEIVHYIEDNADRIAAAVLVVDGKS 94 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 4588889999999999999998851789999995786
No 41
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.70 E-value=3.5e-16 Score=128.85 Aligned_cols=89 Identities=26% Similarity=0.291 Sum_probs=73.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.|.|||.||||||||||.||+...|-+++.|=+|-|...|.+...+ -++.++|.||+-+..+.
T Consensus 40 iVaIvGRPNVGKStLFNrL~~~~~AIV~d~pGvTRDr~~~~~~~~~-----------------~~f~lvDTgG~~~~~~~ 102 (474)
T PRK03003 40 VVAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYDAEWNG-----------------RRFVVQDTGGWEPDAKG 102 (474)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECC-----------------CEEEEEECCCCCCCHHH
T ss_conf 8999899998889999998688638805989988086368999999-----------------28999979999997478
Q ss_pred -CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf -46632899998730374788501234
Q gi|254780226|r 84 -GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 -G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.+-+=+|.+..|.+||+++.|||+..
T Consensus 103 ~~~~i~~q~~~ai~eaD~IlfVvD~~~ 129 (474)
T PRK03003 103 LQALVAEQAEVAMRTADAVLFVVDATV 129 (474)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 999999999999986999999996898
No 42
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.70 E-value=1.1e-16 Score=132.20 Aligned_cols=88 Identities=32% Similarity=0.550 Sum_probs=69.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCC---CC
Q ss_conf 824867528887888999987404898736668674488337997685558777642186502335799985122---35
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAG---LV 78 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaG---Lv 78 (367)
.++|+|+|-|||||||+||+||| ....++|||=+|.|...|.....+ -+++++|+|| |-
T Consensus 3 ~i~IALvGNPN~GKSTLFN~LTG-~~q~VgNwPGvTVEkk~G~~~~~~-----------------~~~~ivDLPG~YSL~ 64 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTG-ARQRVGNWAGVTVERKEGQFSTTD-----------------HQVTLVDLPGTYSLT 64 (772)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC-CCCEEECCCCCEEEEEEEEEEECC-----------------CEEEEEECCCCCCCC
T ss_conf 35699888998789999999868-998357899764742389999689-----------------469999799778699
Q ss_pred CCCCCC----CCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 432224----6632899998730374788501234
Q gi|254780226|r 79 RGASKG----EGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 79 ~gA~~G----~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
+- |+. +-.-.+||-+ .+.|++++||||+.
T Consensus 65 ~~-S~e~s~dE~Var~~ll~-~~pDvvvnVvDAtn 97 (772)
T PRK09554 65 TI-SSQTSLDEQIACHYILS-GDADLLINVVDASN 97 (772)
T ss_pred CC-CCCCCCHHHHHHHHHHC-CCCCEEEEEEECCC
T ss_conf 99-97777308999998613-99989999801687
No 43
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.69 E-value=2e-16 Score=130.44 Aligned_cols=84 Identities=26% Similarity=0.335 Sum_probs=60.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCC----
Q ss_conf 48675288878889999874048-9873666867448833799768555877764218650233579998512235----
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTA-SAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLV---- 78 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~-~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv---- 78 (367)
.|+|+|.||||||||||+||+.. .+.++++|+||.++|..... .++.|+|.||+.
T Consensus 1 eIaivG~pN~GKSTL~N~L~~~~~~~~vs~~~gtTr~i~~~~~~--------------------~~~~~vDtPG~g~~~~ 60 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN--------------------DKFRLVDLPGYGYAKV 60 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEEEEEC--------------------CEEEEEECCCCHHCCC
T ss_conf 98999899999999999996899627860789778520588538--------------------7799996578401016
Q ss_pred CCC---CCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 432---224663289999873037478850123
Q gi|254780226|r 79 RGA---SKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 79 ~gA---~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
+.. ...+ +-.+||....++|.+++|+|+.
T Consensus 61 ~~~~~~~~~~-~~~~~l~~~~~~~~vi~viD~~ 92 (170)
T cd01876 61 SKEVKEKWGK-LIEEYLENRENLKGVVLLIDSR 92 (170)
T ss_pred CHHHHHHHHH-HHHHHHHHHHHHCEEEEEEECC
T ss_conf 8779999999-9999998406334999999632
No 44
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.68 E-value=9.5e-16 Score=125.97 Aligned_cols=91 Identities=30% Similarity=0.355 Sum_probs=76.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
+++++|||+||||||||||++++...+-+++-|-||.|+.-+.....+ .++.++|.||+-+.+
T Consensus 172 ~iriaivGrPNvGKSTl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~-----------------~~~~~iDTaGirkk~ 234 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG-----------------KKYLLIDTAGIRRKG 234 (429)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECC-----------------EEEEEEECCCCCCCC
T ss_conf 526999748876546777776543332147999863102687999999-----------------089999898876366
Q ss_pred CCCCCCH----HHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632----899998730374788501234
Q gi|254780226|r 82 SKGEGLG----NQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlG----N~FL~~ir~aDalihVVdaf~ 109 (367)
+-..++. .+-+..|+.||+.++|+||..
T Consensus 235 k~~~~~e~~s~~~t~~~i~~~dvvil~iD~~~ 266 (429)
T TIGR03594 235 KVTEGIEKYSVLRTLKAIERADVVLLVLDATE 266 (429)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 42304779999999999874477999997665
No 45
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.65 E-value=2.3e-15 Score=123.34 Aligned_cols=91 Identities=29% Similarity=0.382 Sum_probs=74.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
+++++|||+||||||||||+|++...+-+.+-|-||.|+.-...... + -++.|+|.||+-+.+
T Consensus 172 ~iriaiiGrpNvGKStl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~------------~-----~~~~~iDTaGirkk~ 234 (438)
T PRK00093 172 PIKIAIIGRPNVGKSTLINALLGEERVIVSDIAGTTRDSIDTPFERD------------G-----QKYTLIDTAGIRRRG 234 (438)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEC------------C-----CEEEEEECCCCCCCC
T ss_conf 60599955888655678887654333204799985112326799989------------9-----679999898987656
Q ss_pred CCCCCCH----HHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632----899998730374788501234
Q gi|254780226|r 82 SKGEGLG----NQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlG----N~FL~~ir~aDalihVVdaf~ 109 (367)
+-..++- .+=|..|++||+.++|+||..
T Consensus 235 k~~~~iE~~s~~~t~~~i~~~dvvilviDa~~ 266 (438)
T PRK00093 235 KVTEGIEKYSVIRTLKAIERADVVLLVIDATE 266 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 42137889999999999864466999997665
No 46
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.63 E-value=1.4e-14 Score=117.97 Aligned_cols=91 Identities=24% Similarity=0.365 Sum_probs=75.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
+++|+|||+||||||||+|++.+...+-+.+-|-||.||.-..... ++ -.+.|+|.||+-+.+
T Consensus 211 ~~rIAIvGrPNvGKStL~N~llg~~r~ivs~~~GTTRDsI~~~~~~------------~~-----~~~~liDTAGiRrk~ 273 (474)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVDPVDSLIEL------------GG-----KVWRFVDTAGLRRKV 273 (474)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEE------------CC-----EEEEEEECCCCCCCC
T ss_conf 6279998089987889999985897567458998515440589999------------99-----899999898766355
Q ss_pred CCCCCCH----HHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632----899998730374788501234
Q gi|254780226|r 82 SKGEGLG----NQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlG----N~FL~~ir~aDalihVVdaf~ 109 (367)
.-..++- .+-|..|+.||+.|+|+||+.
T Consensus 274 kv~~~iE~~s~~rtl~aI~~advvilviDa~e 305 (474)
T PRK03003 274 GQASGHEFYASLRTHAAIDAAEVAVVLIDASE 305 (474)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 33431458999999999873355799985465
No 47
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.61 E-value=1.4e-14 Score=117.97 Aligned_cols=89 Identities=27% Similarity=0.294 Sum_probs=71.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC-
Q ss_conf 4867528887888999987404898736668674488337997685558777642186502335799985122354322-
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS- 82 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~- 82 (367)
.|.|||.||||||||||.+++...|=++++|=+|-|-..+.+..-+ -++.++|.+|+.+...
T Consensus 281 ~VAIVGRPNVGKSTLFNRL~g~r~AIV~d~pGvTRDR~~~~~~~~~-----------------~~F~lvDTGG~~~~~~~ 343 (714)
T PRK09518 281 TVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG-----------------RDFKLVDTGGWEADAEG 343 (714)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECC-----------------EEEEEEECCCCCCCCHH
T ss_conf 7999899987689999886288416846989988375557999999-----------------16999979999988326
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 246632899998730374788501234
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-....-.|....|.+||++|+|||+-.
T Consensus 344 ~~~~I~~Q~~~Ai~eADlIlFVVD~~~ 370 (714)
T PRK09518 344 IEAAIASQAEIAMTLADAIVFVVDGQV 370 (714)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 999999999999996899999996897
No 48
>PRK11058 putative GTPase HflX; Provisional
Probab=99.61 E-value=4.4e-15 Score=121.47 Aligned_cols=87 Identities=31% Similarity=0.524 Sum_probs=75.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.++|||++|+||||+||+||+ +.+.++|..|+|.||.+..+..|+. -++-+.|.-|.|.+-..
T Consensus 199 ~ValVGYTNAGKSTL~n~Lt~-~~v~~~d~LFATLD~t~R~~~l~~~----------------~~~lltDTVGFI~~LP~ 261 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITE-ARVYAADQLFATLDPTLRRIDVADV----------------GETVLADTVGFIRHLPH 261 (426)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCEEEEECCCC----------------CEEEEECCCHHHHHCCH
T ss_conf 699973577778999877752-8876325450147862026786999----------------86999715066651989
Q ss_pred CCCCHHHH---HHHHHCCCEEEEEECCCC
Q ss_conf 46632899---998730374788501234
Q gi|254780226|r 84 GEGLGNQF---LAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~F---L~~ir~aDalihVVdaf~ 109 (367)
.|-..| |..+..||.|+||||+|.
T Consensus 262 --~LveAF~sTLeEv~~ADlLLhVvD~S~ 288 (426)
T PRK11058 262 --DLVAAFKATLQETRQATLLLHVIDAAD 288 (426)
T ss_pred --HHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf --999999999999963988999984999
No 49
>PRK00454 engB GTPase EngB; Reviewed
Probab=99.60 E-value=6.8e-15 Score=120.17 Aligned_cols=83 Identities=29% Similarity=0.374 Sum_probs=51.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC-
Q ss_conf 248675288878889999874048-987366686744883379976855587776421865023357999851223543-
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTA-SAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG- 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~-~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g- 80 (367)
-+|+|||.||||||||||+|||.. .|-++++|-||.+-|.... ..++.|+|.||. |
T Consensus 25 p~VaivGrpNvGKSTL~N~L~g~k~~a~vs~~pgtTr~i~~~~~--------------------~~~~~lvDtpGy--G~ 82 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--------------------NDGLRLVDLPGY--GY 82 (196)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEC--------------------CCCEEEEECCCC--CC
T ss_conf 68999848988899999998689736997478886079888761--------------------883389937997--41
Q ss_pred CC---CCCC----CHHHHHHHHHCCCEEEEEECC
Q ss_conf 22---2466----328999987303747885012
Q gi|254780226|r 81 AS---KGEG----LGNQFLAHIREVDAIIHVLRC 107 (367)
Q Consensus 81 A~---~G~G----lGN~FL~~ir~aDalihVVda 107 (367)
|. +.+. +=..||..-.+.++++++||+
T Consensus 83 a~~~~~~~~~~~~~i~~yl~~~~~l~~villIDa 116 (196)
T PRK00454 83 AKVSKEEKEKWQKLIEEYLQKRENLKGVVLLIDS 116 (196)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 3277878889999999999962333638999971
No 50
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.60 E-value=4.2e-15 Score=121.58 Aligned_cols=82 Identities=33% Similarity=0.542 Sum_probs=64.4
Q ss_pred ECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCC---CCCCCCCC
Q ss_conf 288878889999874048987366686744883379976855587776421865023357999851223---54322246
Q gi|254780226|r 9 GLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGL---VRGASKGE 85 (367)
Q Consensus 9 G~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGL---v~gA~~G~ 85 (367)
|=||||||||||+||| +...++|||=+|.|=-.|.....+ -+|++||.||. .+..+.-+
T Consensus 1 GNPNVGKStlFN~LTG-~~~~vGNwPG~TVek~eg~l~~~g-----------------~~i~ivDLPG~YSL~~~S~~dE 62 (733)
T TIGR00437 1 GNPNVGKSTLFNALTG-ANQKVGNWPGVTVEKKEGKLKFQG-----------------EDIEIVDLPGIYSLTTFSGLDE 62 (733)
T ss_pred CCCCCHHHHHHHHHHC-CCEEEEECCCCEEEEEEEEEEECC-----------------EEEEEEECCCCCCCCCCCCCHH
T ss_conf 9998158999987415-870787358870787788975246-----------------2789984487300589987427
Q ss_pred CCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 632899998730374788501234
Q gi|254780226|r 86 GLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 86 GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
---..||- --++|.+||||||+.
T Consensus 63 ~v~~dyl~-~e~~DLv~nVVDA~n 85 (733)
T TIGR00437 63 KVARDYLL-NEKPDLVVNVVDASN 85 (733)
T ss_pred HHHHHHHH-CCCCCEEEEEECHHH
T ss_conf 99989975-389967999725667
No 51
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.59 E-value=4.7e-14 Score=114.53 Aligned_cols=91 Identities=30% Similarity=0.377 Sum_probs=74.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
++||+|||+||||||||+|+|.+...+-+.+-|=||.||.-..... +++ ++.|+|.||+-+-.
T Consensus 452 ~~rIAIIGRPNVGKSTLiN~LlgeeR~IVs~iaGTTRDsId~~~~~------------~g~-----~~~lIDTAGiRkk~ 514 (714)
T PRK09518 452 LRRVALVGRPNVGKSSLLNQLTREERAVVNDLAGTTRDPVDEIVNI------------DGK-----DWLFVDTAGIRRKQ 514 (714)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECEEEEEEEE------------CCE-----EEEEEECHHCCCCC
T ss_conf 7358886699887899999996897588568898502305567999------------997-----89999860015244
Q ss_pred CCCCCCH----HHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632----899998730374788501234
Q gi|254780226|r 82 SKGEGLG----NQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlG----N~FL~~ir~aDalihVVdaf~ 109 (367)
+...|+- .+=+..|+.||+.+.|+||+.
T Consensus 515 k~~~~iE~~S~~rt~~aI~~adVvllviDA~~ 546 (714)
T PRK09518 515 KKLTGAEYYASLRTQAAIERCELALILFDASQ 546 (714)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 32543227999999998865889999986776
No 52
>COG1159 Era GTPase [General function prediction only]
Probab=99.57 E-value=5.7e-14 Score=113.96 Aligned_cols=92 Identities=34% Similarity=0.474 Sum_probs=75.8
Q ss_pred CCCE---EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCC
Q ss_conf 9824---8675288878889999874048987366686744883379976855587776421865023357999851223
Q gi|254780226|r 1 MGFK---CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 1 m~~k---iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGL 77 (367)
|+|| ++|||.||||||||.|++-|...+=+++-|-||-..-.|++.-++ .+|-|+|+||+
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~-----------------~QiIfvDTPGi 64 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN-----------------AQIIFVDTPGI 64 (298)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHEEEEEECCC-----------------CEEEEEECCCC
T ss_conf 9736899999869987689999898568257515985311442147998698-----------------44999848988
Q ss_pred CCC-CCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 543-22246632899998730374788501234
Q gi|254780226|r 78 VRG-ASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 78 v~g-A~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-+- ..-|+-|-....+.+..||++++|||+..
T Consensus 65 h~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~ 97 (298)
T COG1159 65 HKPKHALGELMNKAARSALKDVDLILFVVDADE 97 (298)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 876517889999999987245759999986665
No 53
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.49 E-value=1e-13 Score=112.18 Aligned_cols=55 Identities=36% Similarity=0.377 Sum_probs=40.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCC
Q ss_conf 2486752888788899998740489-87366686744883379976855587776421865023357999851223
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTAS-AQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~-~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGL 77 (367)
-+|.|||.||||||||||+|++... +.+++.|-||.+-|...+ ..++.|+|.||.
T Consensus 19 p~IaivGrpNvGKSTL~N~L~g~k~~a~vs~~pGtTr~i~~~~~--------------------~~~~~lvDtpGy 74 (179)
T TIGR03598 19 PEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--------------------NDGFRLVDLPGY 74 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEE--------------------CCCEEEEECCCH
T ss_conf 78999869998889999998689855897089973660232010--------------------473699977760
No 54
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=4.4e-13 Score=107.98 Aligned_cols=58 Identities=36% Similarity=0.544 Sum_probs=50.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCC
Q ss_conf 4867528887888999987404898736668674488337997685558777642186502335799985122354
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVR 79 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~ 79 (367)
++=+.|.||||||||.+++|+ +.+|+|.|||||-.-|+|...-. +-++|++|.|||.-
T Consensus 170 TivVaG~PNVGKSSlv~~lT~-AkpEvA~YPFTTK~i~vGhfe~~-----------------~~R~QvIDTPGlLD 227 (346)
T COG1084 170 TIVVAGYPNVGKSSLVRKLTT-AKPEVAPYPFTTKGIHVGHFERG-----------------YLRIQVIDTPGLLD 227 (346)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCEEEEEEECC-----------------CCEEEEECCCCCCC
T ss_conf 389856998758999988754-89766788853365467655048-----------------70589842886457
No 55
>COG2262 HflX GTPases [General function prediction only]
Probab=99.44 E-value=1.5e-13 Score=111.09 Aligned_cols=87 Identities=33% Similarity=0.588 Sum_probs=67.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.++|||++|+||||+||+||+ +.+..+|-.|+|.+|..-.+.++|.+ .+-+.|.=|.|.+=--
T Consensus 194 ~vaLvGYTNAGKSTL~N~LT~-~~~~~~d~LFATLdpttR~~~l~~g~----------------~vlLtDTVGFI~~LP~ 256 (411)
T COG2262 194 LVALVGYTNAGKSTLFNALTG-ADVYVADQLFATLDPTTRRIELGDGR----------------KVLLTDTVGFIRDLPH 256 (411)
T ss_pred EEEEEEECCCCHHHHHHHHHC-CCEECCCCCCCCCCCCEEEEEECCCC----------------EEEEECCCCCCCCCCH
T ss_conf 589873234449999988724-57130466642105740489807996----------------4998657567155986
Q ss_pred CCCCHHHH---HHHHHCCCEEEEEECCCC
Q ss_conf 46632899---998730374788501234
Q gi|254780226|r 84 GEGLGNQF---LAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~F---L~~ir~aDalihVVdaf~ 109 (367)
-|=-.| |..+.+||+|+||||+|+
T Consensus 257 --~LV~AFksTLEE~~~aDlllhVVDaSd 283 (411)
T COG2262 257 --PLVEAFKSTLEEVKEADLLLHVVDASD 283 (411)
T ss_pred --HHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf --799999998987622777999740688
No 56
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.40 E-value=5.3e-12 Score=100.72 Aligned_cols=84 Identities=24% Similarity=0.345 Sum_probs=56.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC--CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 2486752888788899998740489--87366686744883379976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTAS--AQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~--~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
|=||++|.||+|||||+|+|||... ......+.+|+++.......++ + -++.|+|.||
T Consensus 1 ~vVaivG~~n~GKSTL~n~L~g~~~d~~~~e~~~giTi~~~~~~~~~~~-----------~-----~~i~~iDtPG---- 60 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-----------G-----KRLGFIDVPG---- 60 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHCCCEEEEEEEEEEECCC-----------C-----CEEEEEECCC----
T ss_conf 9999992688729999999849646633333348637985468786489-----------9-----8999994878----
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 22246632899998730374788501234
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
|+ -+-...++.++.+|+.++||||.+
T Consensus 61 -h~--~~~~~~~~~~~~aD~~llVvda~~ 86 (164)
T cd04171 61 -HE--KFIKNMLAGAGGIDLVLLVVAADE 86 (164)
T ss_pred -HH--HHHHHHHHHHHHCCEEEEEEECCC
T ss_conf -79--999999998742672589986177
No 57
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.2e-12 Score=105.08 Aligned_cols=90 Identities=32% Similarity=0.526 Sum_probs=69.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCC--
Q ss_conf 982486752888788899998740489873666867448833799768555877764218650233579998512235--
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLV-- 78 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv-- 78 (367)
|..+++++|-|||||||+||++|| +...++|||=+|.|--.|...... -+++++|.||.=
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG-~~q~VgNwpGvTVEkkeg~~~~~~-----------------~~i~ivDLPG~YSL 63 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTG-ANQKVGNWPGVTVEKKEGKLKYKG-----------------HEIEIVDLPGTYSL 63 (653)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC-CCCEECCCCCCEEEEEEEEEEECC-----------------CEEEEEECCCCCCC
T ss_conf 864389856998548999999856-674654789806998788997358-----------------54899868975658
Q ss_pred CCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 4322246632899998730374788501234
Q gi|254780226|r 79 RGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 79 ~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-..|+.+---..||- =-+.|++++||||+.
T Consensus 64 ~~~S~DE~Var~~ll-~~~~D~ivnVvDA~n 93 (653)
T COG0370 64 TAYSEDEKVARDFLL-EGKPDLIVNVVDATN 93 (653)
T ss_pred CCCCCHHHHHHHHHH-CCCCCEEEEEECCCH
T ss_conf 889920899999986-389988999602323
No 58
>pfam01926 MMR_HSR1 GTPase of unknown function.
Probab=99.39 E-value=9.1e-13 Score=105.86 Aligned_cols=79 Identities=47% Similarity=0.724 Sum_probs=69.9
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCC-CHHHHH
Q ss_conf 8889999874048987366686744883379976855587776421865023357999851223543222466-328999
Q gi|254780226|r 14 GKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKGEG-LGNQFL 92 (367)
Q Consensus 14 GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~G-lGN~FL 92 (367)
|||||||+|++...+.++++|+||.+|+.+.+...+ .++.|+|.||+....+.+.. ++++++
T Consensus 1 GKSsLiN~L~~~~~~~v~~~~gtT~~~~~~~~~~~~-----------------~~i~liDTPGi~~~~~~~~~~~~~~~~ 63 (106)
T pfam01926 1 GKSTLINALTGKKRAIVSDYPGTTRDPNEGRVELDG-----------------KQIILVDTPGIIEGASKGEGELGNRTL 63 (106)
T ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECC-----------------EEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 912799999788855552889988463558998899-----------------889998378732265046788899999
Q ss_pred HHHHCCCEEEEEECCCC
Q ss_conf 98730374788501234
Q gi|254780226|r 93 AHIREVDAIIHVLRCFK 109 (367)
Q Consensus 93 ~~ir~aDalihVVdaf~ 109 (367)
..++++|++++|+|+..
T Consensus 64 ~~~~~~d~il~viD~~~ 80 (106)
T pfam01926 64 EAIEEADLILHVVDASE 80 (106)
T ss_pred HHCCCCCEEEEEEECCC
T ss_conf 72345737999999999
No 59
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.38 E-value=2.9e-12 Score=102.46 Aligned_cols=92 Identities=28% Similarity=0.378 Sum_probs=73.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
++++.|+|+||||||||||+|++-..|=+.+.|=||-|.--+.+.+.. ..+.|+|.|||=.-.
T Consensus 216 G~~v~i~G~PN~GKSSL~N~L~~~drAIVS~ipGTTRD~ie~~l~l~G-----------------~~v~l~DTAGiR~t~ 278 (445)
T PRK05291 216 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG-----------------IPLRLIDTAGIRETE 278 (445)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECC-----------------EEEEEEECCCCCCCC
T ss_conf 986998899987689999998578746731899974040223689999-----------------899999899766557
Q ss_pred CCCCCCH-HHHHHHHHCCCEEEEEECCCCC
Q ss_conf 2246632-8999987303747885012345
Q gi|254780226|r 82 SKGEGLG-NQFLAHIREVDAIIHVLRCFKD 110 (367)
Q Consensus 82 ~~G~GlG-N~FL~~ir~aDalihVVdaf~~ 110 (367)
..=+-+| .+=+..+.+||.+++|+|++..
T Consensus 279 d~IE~~GI~ra~~~~~~ADlil~v~D~s~~ 308 (445)
T PRK05291 279 DEVEKIGIERSRKAIEEADLVLLVLDASEP 308 (445)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_conf 458899999999999839999999879988
No 60
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=99.35 E-value=3.4e-12 Score=101.95 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=53.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 98248675288878889999874048987366686744883379976855587776421865023357999851223543
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
|. ||.|||.||||||||||++.|. .. +.+-|-|| ..+..++|.||.-.
T Consensus 1 Mk-kVaivGrpNvGKSTLlN~L~g~-~i-~~~K~qtt----------------------------~~~~~~IDTPG~~~- 48 (143)
T pfam10662 1 MK-KIMLIGRSGCGKTTLTQALNGE-EL-KYKKTQAI----------------------------EFSDNMIDTPGEYL- 48 (143)
T ss_pred CC-EEEEECCCCCCHHHHHHHHCCC-CE-EECCCEEE----------------------------EECCCEEECCCCCC-
T ss_conf 97-5999899999999999997599-44-51787079----------------------------85574899987665-
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 22246632899998730374788501234
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
+.+-+....+..+.+||+++.|||+..
T Consensus 49 --~~~~~~~~~~~~~~daDvil~vvDa~~ 75 (143)
T pfam10662 49 --ENRRFYSALIVTAADADVIALVQDATE 75 (143)
T ss_pred --CCHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf --628999999999964999999987788
No 61
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.29 E-value=9.4e-11 Score=92.26 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=52.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.|+|+|.||+|||||||++++. .......+.+|.+ ++...++.. .+++ -++.|+|.|| |+
T Consensus 2 ~VaivG~~n~GKSTL~n~L~~~-~~~~~~~~g~T~~--i~~~~~~~~-------~~~~-----~~i~~iDTPG-----h~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKT-NVAAGEAGGITQH--IGAFEVPAE-------VLKI-----PGITFIDTPG-----HE 61 (168)
T ss_pred EEEEEECCCCCHHHHHHHHHCC-CCCEEECCCCEEE--ECEEEEEEE-------ECCC-----CEEEEEECCC-----CH
T ss_conf 8999948998598999998586-7504516981687--153999988-------2588-----7189998998-----16
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
- ..+.--...+.||..++|||+..
T Consensus 62 ~--f~~~~~~~~~~aD~~ilvvda~~ 85 (168)
T cd01887 62 A--FTNMRARGASLTDIAILVVAADD 85 (168)
T ss_pred H--HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 7--79999999862688999986466
No 62
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.25 E-value=5.1e-12 Score=100.78 Aligned_cols=69 Identities=25% Similarity=0.389 Sum_probs=56.8
Q ss_pred CEEEECCC----CCCCCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCC
Q ss_conf 64661057----87545401278676778511001210348369997368887744996888874965315760796549
Q gi|254780226|r 283 LITYFTVG----PKETRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDG 358 (367)
Q Consensus 283 li~~~tvg----~~e~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DG 358 (367)
+|++||-- |+..++.++++|||+.|+|.+||+||.+.|.||.|... . +|..|+ ++|+||+|+|+
T Consensus 1 liRVYtK~~g~~~d~~~P~il~~gsTV~d~~~~iH~~l~~~fkyA~VWG~--S--------~K~~~Q--rVG~~H~L~D~ 68 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGS--S--------VKHSPQ--RVGLDHVLEDE 68 (75)
T ss_pred CEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCEEEEECC--C--------CCCCCC--CCCCCCEECCC
T ss_conf 97997379999999888978569995999999999999854788999567--7--------573853--73898573689
Q ss_pred CEEEE
Q ss_conf 88999
Q gi|254780226|r 359 DILHF 363 (367)
Q Consensus 359 DVi~~ 363 (367)
|||+|
T Consensus 69 DVV~I 73 (75)
T cd01666 69 DVVQI 73 (75)
T ss_pred CEEEE
T ss_conf 89998
No 63
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=99.23 E-value=7.7e-11 Score=92.87 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=55.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHH-H-HCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776-4-218650233579998512235432
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLA-E-IAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~-~-~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.++|+|.||+|||||+|+|++ ....+......|..+.. -..++++-.-.. + .+-....-..++.|+|.||-..
T Consensus 5 nVaivG~~n~GKSTL~n~Ll~-~~~~i~~~~~~~~~~~~--d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDtPGh~~-- 79 (185)
T pfam00009 5 NIGIIGHVDHGKTTLTDALLY-VTGAIDKRGEVKQEGEL--DRLKEERERGITIKIAAVSFETKKRHINIIDTPGHVD-- 79 (185)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HCCCCCCCCCCCCCCCC--CCCHHHHHCCEEEEEEEEEEEECCCEEEEEECCCCCC--
T ss_conf 899993899449999999971-54876546431003333--6558888578269876999960893689998998714--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.-...+.-++.||+.+.||||..
T Consensus 80 -----f~~~~~~~l~~aD~~vlVvda~~ 102 (185)
T pfam00009 80 -----FTKEMIRGAAQADGAILVVDAVE 102 (185)
T ss_pred -----HHHHHHHHHHHCCCCEEEEECCC
T ss_conf -----39999999864656429998676
No 64
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule. The N-terminal half can be removed without affecting the GTP-binding/hydrolysis function of the GTP-binding domain. The last four amino acids of all orthologues of ThdF/TrmE are highly conserved, being either CIGK or CLGK. This matches the Caax (where 'a' represents an aliphatic amino acid, and 'x' represents any amino acid) motif for isoprenylation that anchors small GTP-binding proteins to cell membranes in eukaryotic cells. However, protein isoprenylation has never been shown to occur in bacteria. Interestingly, biochemical experiments have shown that the Escherichia coli TrmE protein peripherally associates with the membrane fraction . Although the biochemical properties of TrmE have been investigated for the E. coli and Thermotoga maritima proteins, nothing is known about the relationship of this protein to tRNA modification. Orthologues of TrmE are present in eukaryotes and bacteria, but are not present in archaea. In Saccharomyces cerevisiae, Mss1p is a nuclear-encoded mitochondrial protein that is the yeast orthologue of TrmE. Mss1p interacts with the 15S rRNA of the yeast mitochondria, which is equivalent to the 16S rRNA of bacteria. Subsequent analysis of the S. cerevisiae MTO1 gene suggests that MSS1 and MTO1 act together in a pathway involved in optimizing mitochondrial protein synthesis. TrmE may play a role in tRNA processing and may be directly or indirectly involved in regulating ribosome function.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006400 tRNA modification, 0005622 intracellular.
Probab=99.23 E-value=5.1e-11 Score=94.08 Aligned_cols=92 Identities=34% Similarity=0.479 Sum_probs=78.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
|+|+.|||.||||||+||||+-....|=+.+||=||-|--=+...+. ...|+++|.||+=+-+
T Consensus 225 g~k~ai~G~~NvGKSSLLNa~l~~DrAiVS~~kGtTRD~vE~~~~L~-----------------G~~~~~lDTAGiR~~~ 287 (473)
T TIGR00450 225 GFKLAIVGKPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN-----------------GILVKLLDTAGIREHA 287 (473)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEEC-----------------CEEEEEEECCCCCCCH
T ss_conf 94799964788757899998762287055276688320442057774-----------------6789985146751020
Q ss_pred CCCCCCH-HHHHHHHHCCCEEEEEECCCCC
Q ss_conf 2246632-8999987303747885012345
Q gi|254780226|r 82 SKGEGLG-NQFLAHIREVDAIIHVLRCFKD 110 (367)
Q Consensus 82 ~~G~GlG-N~FL~~ir~aDalihVVdaf~~ 110 (367)
+.=+-+| .|=+.-|.+||.+|+|+|++..
T Consensus 288 ~~~E~~GiekS~~~i~~A~LVi~~~D~~~~ 317 (473)
T TIGR00450 288 DKVERLGIEKSFKAIKQADLVIYVLDASQP 317 (473)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_conf 046677689989998605734788874789
No 65
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.22 E-value=8.8e-11 Score=92.47 Aligned_cols=91 Identities=32% Similarity=0.432 Sum_probs=72.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
++|+.|+|.|||||||++|||.+-..|=+.+.|=||-|---..+.+. -+| +.++|.|||-+-.
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~---------------G~p--v~l~DTAGiRet~ 279 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN---------------GIP--VRLVDTAGIRETD 279 (454)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEEC---------------CEE--EEEEECCCCCCCC
T ss_conf 86499987998867999998866786674289997410378999989---------------889--9998567766673
Q ss_pred CCCCCCH-HHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632-899998730374788501234
Q gi|254780226|r 82 SKGEGLG-NQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlG-N~FL~~ir~aDalihVVdaf~ 109 (367)
..=+-.| .+=...+.+||.+++|+|++.
T Consensus 280 d~VE~iGIeRs~~~i~~ADlvL~v~D~~~ 308 (454)
T COG0486 280 DVVERIGIERAKKAIEEADLVLFVLDASQ 308 (454)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf 48999999999999985998999970887
No 66
>KOG1490 consensus
Probab=99.07 E-value=3.9e-10 Score=88.12 Aligned_cols=87 Identities=25% Similarity=0.326 Sum_probs=62.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
++=|+|.||||||+|.|-+| -+.+++.+|||||--=-+|-.. +-|-..|++|.|||.----|
T Consensus 170 TlllcG~PNVGKSSf~~~vt-radvevqpYaFTTksL~vGH~d-----------------ykYlrwQViDTPGILD~plE 231 (620)
T KOG1490 170 TLLVCGYPNVGKSSFNNKVT-RADDEVQPYAFTTKLLLVGHLD-----------------YKYLRWQVIDTPGILDRPEE 231 (620)
T ss_pred EEEEECCCCCCCHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHH-----------------HHEEEEEECCCCCCCCCCHH
T ss_conf 17985278877376435520-1555557766551012100203-----------------24023440388412476054
Q ss_pred CCC----CHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 466----328999987303747885012345
Q gi|254780226|r 84 GEG----LGNQFLAHIREVDAIIHVLRCFKD 110 (367)
Q Consensus 84 G~G----lGN~FL~~ir~aDalihVVdaf~~ 110 (367)
-+- .----|+|||. |.+++.|.|+.
T Consensus 232 drN~IEmqsITALAHLra--aVLYfmDLSe~ 260 (620)
T KOG1490 232 DRNIIEMQIITALAHLRS--AVLYFMDLSEM 260 (620)
T ss_pred HHHHHHHHHHHHHHHHHH--HHEEEEECHHH
T ss_conf 321799999999987565--64113432212
No 67
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.04 E-value=1.2e-09 Score=84.91 Aligned_cols=91 Identities=26% Similarity=0.362 Sum_probs=69.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
++|++|||.|||||||+.|++++-..+-+.+-|=||+|+-...... +++ ++.++|.||+=+-+
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~------------~~~-----~~~liDTAGiRrk~ 240 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER------------DGR-----KYVLIDTAGIRRKG 240 (444)
T ss_pred CEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEE------------CCE-----EEEEEECCCCCCCC
T ss_conf 5089999278787058887750682598459998622033125899------------881-----89999877877466
Q ss_pred CCCCCC----HHHHHHHHHCCCEEEEEECCCC
Q ss_conf 224663----2899998730374788501234
Q gi|254780226|r 82 SKGEGL----GNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~Gl----GN~FL~~ir~aDalihVVdaf~ 109 (367)
.--.+. =++-+..|..||..+.|+||..
T Consensus 241 ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~ 272 (444)
T COG1160 241 KITESVEKYSVARTLKAIERADVVLLVIDATE 272 (444)
T ss_pred CCCCCEEEEEEHHHHHHHHHCCEEEEEEECCC
T ss_conf 41242688750546767865688999998887
No 68
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.04 E-value=3.9e-09 Score=81.33 Aligned_cols=81 Identities=22% Similarity=0.411 Sum_probs=58.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG 84 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G 84 (367)
+=|+|++++||||||+.|...... --+|++.||+|....+.+ .+ +.+++++|+||=-
T Consensus 3 vLl~Gl~~aGKT~Lf~~L~~~~~~----~T~tS~~~n~~~~~~~~~--------~~-----~~~~~lvD~PGH~------ 59 (203)
T cd04105 3 VLLLGPSDSGKTALFTKLTTGKYR----STVTSIEPNVATFILNSE--------GK-----GKKFRLVDVPGHP------ 59 (203)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC----CCCCCCCCCCEEEECCCC--------CC-----CCEEEEEECCCCH------
T ss_conf 999907999899999999749988----877888786206640246--------68-----7279999879968------
Q ss_pred CCCHHHHHHHHHC-CCEEEEEECCCC
Q ss_conf 6632899998730-374788501234
Q gi|254780226|r 85 EGLGNQFLAHIRE-VDAIIHVLRCFK 109 (367)
Q Consensus 85 ~GlGN~FL~~ir~-aDalihVVdaf~ 109 (367)
.|-.+++..+.+ +++||.|||++.
T Consensus 60 -klR~~~~~~~~~~~~gIVfvVDs~~ 84 (203)
T cd04105 60 -KLRDKLLETLKNSAKGIVFVVDSAT 84 (203)
T ss_pred -HHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf -8999999998754989999996887
No 69
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.01 E-value=5.7e-09 Score=80.27 Aligned_cols=80 Identities=21% Similarity=0.232 Sum_probs=53.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||=++|.+||||||+++.++. .. .. ...+|+..|+..+... ..++++.|+|| .
T Consensus 14 ~~Ki~ilG~~~sGKTsll~~l~~-~~--~~-~~~pT~g~~~~~v~~~-----------------~~~~~lwD~~G----~ 68 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLAS-ED--IS-HITPTQGFNIKTVQSD-----------------GFKLNVWDIGG----Q 68 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC-CC--CC-CCCCCCCEEEEEEEEC-----------------CEEEEEEECCC----C
T ss_conf 75899997999988999999856-99--86-6068113237999989-----------------99999985587----5
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.+ +-+-.-...++||++|+|||+++
T Consensus 69 ~~---~~~~~~~y~~~a~~iI~VvD~td 93 (173)
T cd04155 69 RA---IRPYWRNYFENTDCLIYVIDSAD 93 (173)
T ss_pred HH---HHHHHHHHCCCCCEEEEEEECCC
T ss_conf 10---12689976555637999996675
No 70
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=99.00 E-value=4.4e-09 Score=81.01 Aligned_cols=80 Identities=24% Similarity=0.292 Sum_probs=55.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||=++|.||||||||++.++... ... ...|+.+|...+...+ .++++.|+||-
T Consensus 14 ~~Ki~llG~~~vGKTsll~~~~~~~---~~~-~~pTig~~~~~v~~~~-----------------~~~~iwDt~Gq---- 68 (174)
T pfam00025 14 EMRILILGLDNAGKTTILYKLKLGE---IVT-TIPTIGFNVETVTYKN-----------------VKFTVWDVGGQ---- 68 (174)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC---CCC-CCCCCCCEEEEEEECC-----------------EEEEEEECCCC----
T ss_conf 6699999999998899999995499---887-4474682389999899-----------------99999827987----
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.+-+.+.. ...++||++|+|+|++.
T Consensus 69 e~~~~~~~---~y~~~a~~ii~V~D~t~ 93 (174)
T pfam00025 69 ESLRPLWR---NYFPNTDAVIFVVDSAD 93 (174)
T ss_pred CCCCHHHH---HHHCCCCEEEEEEECCC
T ss_conf 02326799---88417826899986786
No 71
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.99 E-value=1.1e-08 Score=78.24 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=51.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||=++|.|||||||+++.+++ .. |.++.|.+|.-.. .-.+-..++++-|+||-
T Consensus 14 ~~KililG~~~sGKTsll~~l~~-~~-------~~~~~pT~G~~~~-------------~~~~~~~~l~iwD~~G~---- 68 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLG-ED-------IDTISPTLGFQIK-------------TLEYEGYKLNIWDVGGQ---- 68 (173)
T ss_pred CEEEEEECCCCCCHHHHHHHHCC-CC-------CCCCCCCCCEEEE-------------EEEECCEEEEEEECCCC----
T ss_conf 31899998999788999999839-99-------8972670577789-------------99989999999966886----
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.+=+.+.. ...++||++|.|||+++
T Consensus 69 e~~~~~~~---~y~~~a~~ii~VvD~td 93 (173)
T cd04154 69 KTLRPYWR---NYFESTDALIWVVDSSD 93 (173)
T ss_pred CCCCHHHH---HHHCCCCEEEEEEECCC
T ss_conf 02005899---97226653899985565
No 72
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.97 E-value=1e-08 Score=78.56 Aligned_cols=80 Identities=30% Similarity=0.425 Sum_probs=54.2
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE----EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 867528887888999987404898736668674488337----9976855587776421865023357999851223543
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG----EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g----~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
|=++|.+|||||||++.++ ..-......+++++-|.+| .+... ..++++.|+||-
T Consensus 2 ivilG~~~~GKTsll~~l~-~~~~~~~~~~~~~~~~Tvg~~~~~i~~~-----------------~~~l~iwD~~Gq--- 60 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLK-TLFSKYKGLPPSKITPTVGLNIGTIEVG-----------------NARLKFWDLGGQ--- 60 (167)
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCCCCCCCCCCCCCCCCEEEEEEEEC-----------------CEEEEEEECCCC---
T ss_conf 9999999988889999887-5036767776554035313268999989-----------------999999968987---
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 22246632899998730374788501234
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.+=+-+ .-...++||++|+|||+++
T Consensus 61 -e~~~~l---~~~y~~~a~~ii~VvD~sd 85 (167)
T cd04160 61 -ESLRSL---WDKYYAECHAIIYVIDSTD 85 (167)
T ss_pred -HHHHHH---HHHHCCCCCEEEEEEECCC
T ss_conf -888789---9874289878999986686
No 73
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=98.97 E-value=6.7e-09 Score=79.77 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=56.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.+=|+|+.++||||||+.|+.....+ -.|+++||.+....+. ++ .+++++|+||=-+
T Consensus 5 tvLllGl~~sGKT~Lf~~L~~~~~~~----T~tS~~~n~~~~~~~~----------~~-----~~~~lvD~PGh~k---- 61 (181)
T pfam09439 5 AVIIAGLCDSGKTSLFTLLTTGSVRK----TVTSQEPSAAYKYMNN----------KG-----NSLTLIDFPGHVK---- 61 (181)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC----EECCCCCCCEEEEECC----------CC-----CEEEEEECCCCHH----
T ss_conf 69998689998999999997599487----5888678640687516----------89-----6689998899689----
Q ss_pred CCCCHHHHHH---HHHCCCEEEEEECCCC
Q ss_conf 4663289999---8730374788501234
Q gi|254780226|r 84 GEGLGNQFLA---HIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~---~ir~aDalihVVdaf~ 109 (367)
|-.++++ +.+++.+||.|||++.
T Consensus 62 ---lR~~~~~~~~~~~~~~gIVfVVDS~~ 87 (181)
T pfam09439 62 ---LRYKLLETLKDSSSLRGLVFVVDSTA 87 (181)
T ss_pred ---HHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf ---99999986430026449999997866
No 74
>KOG1191 consensus
Probab=98.96 E-value=7.9e-09 Score=79.29 Aligned_cols=89 Identities=31% Similarity=0.474 Sum_probs=65.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCC-C
Q ss_conf 824867528887888999987404898736668674488337997685558777642186502335799985122354-3
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVR-G 80 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~-g 80 (367)
+++|.|+|.|||||||+.|||+.-..+=+..-|=||-|.--..+.+ +| .++-++|.||+-+ .
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~------------~G-----~~v~L~DTAGiRe~~ 330 (531)
T KOG1191 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV------------NG-----VPVRLSDTAGIREES 330 (531)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHEEEEEC------------CC-----EEEEEEECCCCCCCC
T ss_conf 7728997699877889998875077447678999641001227630------------87-----589997341310026
Q ss_pred CCCCCCCH-HHHHHHHHCCCEEEEEECC
Q ss_conf 22246632-8999987303747885012
Q gi|254780226|r 81 ASKGEGLG-NQFLAHIREVDAIIHVLRC 107 (367)
Q Consensus 81 A~~G~GlG-N~FL~~ir~aDalihVVda 107 (367)
...=+-+| ++=-.-++++|+++.||||
T Consensus 331 ~~~iE~~gI~rA~k~~~~advi~~vvda 358 (531)
T KOG1191 331 NDGIEALGIERARKRIERADVILLVVDA 358 (531)
T ss_pred CCHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 8706777689999887654779999633
No 75
>KOG1423 consensus
Probab=98.95 E-value=3.1e-09 Score=82.00 Aligned_cols=92 Identities=25% Similarity=0.330 Sum_probs=71.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
++.+++||-||||||||-|.+-+-..+.+..-+-||-.-+.|++--++ .++-|+|.||||.--
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-----------------TQlvf~DTPGlvs~~ 134 (379)
T KOG1423 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-----------------TQLVFYDTPGLVSKK 134 (379)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCC-----------------EEEEEECCCCCCCCC
T ss_conf 789999708976545544576487212011566530201357871596-----------------589996487645334
Q ss_pred C-CCCCCHHHHHH----HHHCCCEEEEEECCCCC
Q ss_conf 2-24663289999----87303747885012345
Q gi|254780226|r 82 S-KGEGLGNQFLA----HIREVDAIIHVLRCFKD 110 (367)
Q Consensus 82 ~-~G~GlGN~FL~----~ir~aDalihVVdaf~~ 110 (367)
+ .+--+--.||. .+.+||.++-|+|++..
T Consensus 135 ~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~t 168 (379)
T KOG1423 135 MHRRHHLMMSVLQNPRDAAQNADCVVVVVDASAT 168 (379)
T ss_pred HHHHHHHHHHHHHCHHHHHHHCCEEEEEEECCCC
T ss_conf 1356788887653789888638879999855677
No 76
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.94 E-value=4.1e-08 Score=74.45 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=51.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCC----------------CCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEE
Q ss_conf 8675288878889999874048987366686----------------744883379976855587776421865023357
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPF----------------CTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTR 68 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypF----------------tTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~ 68 (367)
|+|+|-||+|||||.++|++.. ..+..-.. .||+....... +-..+
T Consensus 2 v~iiGh~d~GKTTL~~~Ll~~~-~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~-----------------~~~~~ 63 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVT-GDIERDGTVEETFLDVLKEERERGITIKSGVATFE-----------------WPDRR 63 (189)
T ss_pred EEEECCCCCCHHHHHHHHHHHC-CCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEE-----------------ECCEE
T ss_conf 8999179989999999999764-72356862588850577788863841322279999-----------------89989
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99985122354322246632899998730374788501234
Q gi|254780226|r 69 MSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 69 i~~iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
+.|+|.||-.. .-...+.-++.||+.+.||||..
T Consensus 64 i~~iDTPGh~~-------f~~~~~~~l~~aD~ailvVda~~ 97 (189)
T cd00881 64 VNFIDTPGHED-------FSSEVIRGLSVSDGAILVVDANE 97 (189)
T ss_pred EEEEECCCCHH-------HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 99996998188-------99999999864685699998798
No 77
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.93 E-value=1.4e-09 Score=84.36 Aligned_cols=56 Identities=30% Similarity=0.456 Sum_probs=43.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCC
Q ss_conf 8248675288878889999874048987366686744883379976855587776421865023357999851223
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGL 77 (367)
.+++|+||.||||||||+|+|++...+.++|.|=||- +.-.+++. -.+.++|.||+
T Consensus 102 ~i~v~ivG~PNVGKSSlIN~L~g~k~~~vs~~PG~Tr--~~q~i~~~------------------~~i~liDTPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETK--VWQYITLM------------------KRIYLIDCPGV 157 (157)
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEE--EEEEEEEC------------------CCEEEEECCCC
T ss_conf 4699998258853368898872673588659883377--77999968------------------99999969099
No 78
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.90 E-value=2.8e-09 Score=82.33 Aligned_cols=35 Identities=43% Similarity=0.633 Sum_probs=16.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 24867528887888999987404898736668674
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCT 37 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtT 37 (367)
+++++||.||||||||+|+|.+...+.+++.|=||
T Consensus 116 ~~v~ivG~PNVGKSSlIN~L~~~~~~~v~~~pGtT 150 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVT 150 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 17999737987617999997488638876989853
No 79
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.90 E-value=1.8e-08 Score=76.85 Aligned_cols=78 Identities=23% Similarity=0.257 Sum_probs=52.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||=++|.|||||||+++.++.. . ... +.+|+..|...+.. ...++++.|+||- .+
T Consensus 1 Ki~ilG~~~vGKTsll~~l~~~-~--~~~-~~pTig~~~~~i~~-----------------~~~~l~iwDt~G~----~~ 55 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLG-E--VVT-TIPTIGFNVETVEY-----------------KNVSFTVWDVGGQ----DK 55 (158)
T ss_pred CEEEECCCCCCHHHHHHHHHCC-C--CCC-CCCEECCCEEEEEE-----------------CCEEEEEEECCCC----CC
T ss_conf 9999999999889999999539-9--887-44560740899984-----------------8899999988997----22
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-+.+... ..++||++|.|+|+++
T Consensus 56 ~~~~~~~---y~~~a~~~i~V~D~t~ 78 (158)
T cd00878 56 IRPLWKH---YYENTNGIIFVVDSSD 78 (158)
T ss_pred CCHHHHH---HHCCCCEEEEEEECCC
T ss_conf 1448998---7276877689983798
No 80
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.89 E-value=1.9e-09 Score=83.40 Aligned_cols=58 Identities=36% Similarity=0.499 Sum_probs=49.7
Q ss_pred EEECCCCCCCCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEEEE
Q ss_conf 66105787545401278676778511001210348369997368887744996888874965315760796549889996
Q gi|254780226|r 285 TYFTVGPKETRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILHFR 364 (367)
Q Consensus 285 ~~~tvg~~e~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~ 364 (367)
.+||- .-+.|.+|+|||+.|+||.|||++++.|+.|.+-. |++..+|.|+|||+|+|.
T Consensus 2 ~vftP---~G~~~~lP~GaT~~D~A~~Iht~lg~~~~~a~Vng-------------------~~~~l~~~L~~gd~V~Ii 59 (60)
T cd01616 2 IIFTP---DGSAVELPKGATAMDFALKIHTDLGKGFIGALVNG-------------------QLVDLSYTLQDGDTVSIV 59 (60)
T ss_pred EEECC---CCCEEECCCCCCHHHHHHHHCCCHHHEEEEEEECC-------------------EECCCCCCCCCCCEEEEE
T ss_conf 99899---99879889989899999987636154599999999-------------------996516699999999997
No 81
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.87 E-value=2.7e-09 Score=82.39 Aligned_cols=56 Identities=32% Similarity=0.598 Sum_probs=44.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCC
Q ss_conf 8248675288878889999874048987366686744883379976855587776421865023357999851223
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGL 77 (367)
++++++||.||||||||+|+|.+...+.+++.|-||.+... ++. + -.+.++|.||+
T Consensus 100 ~~~i~ivG~PNVGKSsliN~L~~~~~~~v~~~pGtTrd~~~--i~~------------~------~~~~liDTpGi 155 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKL------------D------NKIKLLDTPGI 155 (155)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECEEE--EEE------------C------CCEEEEECCCC
T ss_conf 60899987777447789999847850626699983835599--996------------8------99899979299
No 82
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.86 E-value=3e-09 Score=82.13 Aligned_cols=59 Identities=31% Similarity=0.464 Sum_probs=45.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 8248675288878889999874048987366686744883379976855587776421865023357999851223543
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
++++++||.|||||||+.|+|.+...+.+++.|=+|-. .-.+.+. -.+.++|.||+++=
T Consensus 118 ~i~v~vVG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tr~--~q~i~l~------------------~~i~llDtPGvl~P 176 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLS------------------DGLELLDTPGILWP 176 (276)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCE--EEEEEEC------------------CCEEEECCCCCCCC
T ss_conf 63899972798758999998736725877796542102--5899957------------------97799668874578
No 83
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=98.84 E-value=4.1e-09 Score=81.21 Aligned_cols=59 Identities=32% Similarity=0.472 Sum_probs=45.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 8248675288878889999874048987366686744883379976855587776421865023357999851223543
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
++++++||.|||||||+.|+|.+...+.+++.|=+|-.. -.+++. -.+.++|.||+++-
T Consensus 121 ~i~v~vvG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tk~~--q~v~l~------------------~~i~L~DtPGvl~P 179 (282)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKSQ--QWIKLG------------------KGLELLDTPGILWP 179 (282)
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCEEEE--EEEEEC------------------CCEEEECCCCCCCC
T ss_conf 638999706977679999987477058767965410025--899957------------------98899668874578
No 84
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.83 E-value=6.3e-09 Score=79.98 Aligned_cols=34 Identities=47% Similarity=0.697 Sum_probs=15.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 4867528887888999987404898736668674
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCT 37 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtT 37 (367)
+++++|.||||||||+|+|.+...+.+++.|-||
T Consensus 103 ~v~ivG~PNVGKSTLIN~L~~~~~~~v~~~pGtT 136 (156)
T cd01859 103 KVGVVGYPNVGKSSIINALKGRHSASTSPSPGYT 136 (156)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEE
T ss_conf 8999814784598999997488137775999807
No 85
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.82 E-value=5.8e-08 Score=73.45 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=51.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||=++|.+||||||+++.++.... ...+ +|+.-|+-.+.++ + ..++++-|+||- ..
T Consensus 1 KivilG~~~~GKTsil~r~~~~~~--~~~~--pTig~~~~~~~~~--------------~--~~~l~iwD~~G~----e~ 56 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL--VTTI--PTVGFNVEMLQLE--------------K--HLSLTVWDVGGQ----EK 56 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCC--CCCC--CCCCEEEEEEEEC--------------C--EEEEEEEECCCC----CC
T ss_conf 999999999999999999956987--7757--7615038999989--------------9--899999978986----24
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-+-+.+.+ .|+||++|.|+|+++
T Consensus 57 ~~~~~~~y---~~~a~~iI~V~D~td 79 (160)
T cd04156 57 MRTVWKCY---LENTDGLVYVVDSSD 79 (160)
T ss_pred CCHHHHHH---HCCCCEEEEEEECCC
T ss_conf 74158877---456778999985686
No 86
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.82 E-value=7.6e-09 Score=79.42 Aligned_cols=61 Identities=30% Similarity=0.445 Sum_probs=46.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
..++|+||.|||||||+-|+|.+...+.++++|=+|..-+ .+++. -.+.++|.||+++--
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q--~i~~~------------------~~i~LlDtPGii~~~ 191 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ--WIKLD------------------DGIYLLDTPGIIPPK 191 (322)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCE--EEECC------------------CCEEEEECCCCCCCC
T ss_conf 6089998789764899999986205552379996204516--89727------------------862897388807886
Q ss_pred C
Q ss_conf 2
Q gi|254780226|r 82 S 82 (367)
Q Consensus 82 ~ 82 (367)
.
T Consensus 192 ~ 192 (322)
T COG1161 192 F 192 (322)
T ss_pred C
T ss_conf 4
No 87
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.81 E-value=8.1e-09 Score=79.20 Aligned_cols=57 Identities=32% Similarity=0.451 Sum_probs=44.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVR 79 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~ 79 (367)
..+|+||.||||||||.|+|.+-..+.+++.|=||-. ...+.+ + -.+.++|.||++.
T Consensus 84 ~~i~ivG~PNVGKSSlIN~L~g~k~~~v~~~PG~Tr~--~~~i~~------------~------~~i~liDTPGi~~ 140 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKH--FQTIFL------------T------PTITLCDCPGLVF 140 (141)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCC--EEEEEE------------C------CCEEEEECCCCCC
T ss_conf 2689977888669999999858866876599941576--689996------------8------9999998988689
No 88
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.81 E-value=8.5e-08 Score=72.32 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=52.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
+|-++|.+|||||||++.++.. . -..+| .+||..+.-.+..+ ..++++.|+||- .+
T Consensus 1 ~I~llG~~~~GKTsll~~~~~~-~-f~~~~-~pTig~~~~~i~~~-----------------~~~l~iwDt~G~----e~ 56 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGG-Q-FSEDT-IPTVGFNMRKVTKG-----------------NVTLKVWDLGGQ----PR 56 (159)
T ss_pred CEEEECCCCCCHHHHHHHHHCC-C-CCCCC-CCCCCEEEEEEEEC-----------------CEEEEEEECCCH----HH
T ss_conf 9899999998699999999759-9-98861-67325058999989-----------------999999979835----87
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-+.+... ..|+||++++|+|+++
T Consensus 57 ~~~l~~~---y~~~~~~ii~V~D~sd 79 (159)
T cd04159 57 FRSMWER---YCRGVNAIVYVVDAAD 79 (159)
T ss_pred HHHHHHH---HHCCCCEEEECCCCCC
T ss_conf 7999998---7468636875157787
No 89
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.81 E-value=5.8e-08 Score=73.45 Aligned_cols=79 Identities=25% Similarity=0.357 Sum_probs=51.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG 84 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G 84 (367)
|=++|++||||||+.+.+.. ...... +..+|+-.|+..+... ..++++.|++| ..+.
T Consensus 2 Il~lGl~~sGKTtil~~l~~-~~~~~~-~~~pT~G~~~~~~~~~-----------------~~~~~iwD~~G----~~~~ 58 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKP-ENAQSQ-IIVPTVGFNVESFEKG-----------------NLSFTAFDMSG----QGKY 58 (162)
T ss_pred EEEECCCCCCHHHHHHHHHC-CCCCCC-CCCCCCCEEEEEEEEC-----------------CEEEEEEECCC----CCCC
T ss_conf 99999999988999999972-898756-4168507578999839-----------------98899998588----7442
Q ss_pred CCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 6632899998730374788501234
Q gi|254780226|r 85 EGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 85 ~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
+.+...+ .++||++|.|||+++
T Consensus 59 r~lw~~y---~~~~~~iI~VvDssd 80 (162)
T cd04157 59 RGLWEHY---YKNIQGIIFVIDSSD 80 (162)
T ss_pred CHHHHHH---HCCCCEEEEEEECCC
T ss_conf 0558987---056744899970763
No 90
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.78 E-value=2.5e-07 Score=69.12 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=53.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||=++|++||||||+++.+.. ... ... ..|+-.|+-.+.. -..++++-|+|| .
T Consensus 17 ~~kililGl~~sGKTsil~~l~~-~~~-~~~--~pTvg~~~~~~~~-----------------~~~~l~iwD~~G----q 71 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKL-GEV-VTT--IPTIGFNVETVEY-----------------KNLKFTMWDVGG----Q 71 (182)
T ss_pred EEEEEEECCCCCCHHHHHHHHHC-CCC-CCC--CCCCCCCEEEEEE-----------------CCEEEEEEECCC----C
T ss_conf 47999996799889999999962-997-773--7868845699997-----------------888999998999----8
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
..-+.+...+ .|+||++|.|||+++
T Consensus 72 e~~r~lw~~y---y~~~~giI~VvD~sd 96 (182)
T PTZ00133 72 DKLRPLWRHY---YQNTNGIIFVVDSND 96 (182)
T ss_pred CCCCHHHHHC---CCCCCEEEEEEECCC
T ss_conf 4547478760---567644999996678
No 91
>KOG0410 consensus
Probab=98.76 E-value=1.2e-08 Score=78.17 Aligned_cols=87 Identities=26% Similarity=0.420 Sum_probs=64.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
-|.+||++|+||||+.|+||+ +.....+.-|.|.||..-.+..|. ++- +-|+|.-|.+..--
T Consensus 180 viavVGYTNaGKsTLikaLT~-Aal~p~drLFATLDpT~h~a~Lps-----------g~~-----vlltDTvGFisdLP- 241 (410)
T KOG0410 180 VIAVVGYTNAGKSTLIKALTK-AALYPNDRLFATLDPTLHSAHLPS-----------GNF-----VLLTDTVGFISDLP- 241 (410)
T ss_pred EEEEEEECCCCHHHHHHHHHH-HHCCCCCHHHEECCCHHHHCCCCC-----------CCE-----EEEEECHHHHHHCC-
T ss_conf 289996347668899999875-005830001101253134300799-----------867-----99960346665474-
Q ss_pred CCCCHHH---HHHHHHCCCEEEEEECCCC
Q ss_conf 4663289---9998730374788501234
Q gi|254780226|r 84 GEGLGNQ---FLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~---FL~~ir~aDalihVVdaf~ 109 (367)
-+|=-. -|.++..+|.|+||||.|.
T Consensus 242 -~~LvaAF~ATLeeVaeadlllHvvDiSh 269 (410)
T KOG0410 242 -IQLVAAFQATLEEVAEADLLLHVVDISH 269 (410)
T ss_pred -HHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf -9999999999998752344899861579
No 92
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.75 E-value=3.5e-07 Score=68.15 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=52.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||=++|++||||||+++.+.. ... ... ..|+..|+-.+... ..++++-|+|| .
T Consensus 13 ~~kililG~~~~GKTsil~~l~~-~~~-~~~--~pTvg~~~~~~~~~-----------------~~~l~iwD~~G----q 67 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL-GES-VTT--IPTIGFNVETVTYK-----------------NISFTVWDVGG----Q 67 (175)
T ss_pred EEEEEEECCCCCCHHHHHHHHHC-CCC-CCC--CCCCCCEEEEEEEC-----------------CEEEEEEECCC----C
T ss_conf 89999998899998999999965-997-775--79788107999989-----------------89999998999----8
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.+=+.+...+ .|+||++|.|||+++
T Consensus 68 e~~r~l~~~Y---y~~a~~iIfVvD~sd 92 (175)
T smart00177 68 DKIRPLWRHY---YTNTQGLIFVVDSND 92 (175)
T ss_pred CCCCHHHHHH---CCCCCEEEEEEECCC
T ss_conf 5455367775---577618999986687
No 93
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.73 E-value=1.2e-07 Score=71.35 Aligned_cols=80 Identities=26% Similarity=0.417 Sum_probs=57.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||=++|+.|+||||+.+.+-. .. .. ....|+-+|+..+.+.+ .++.+.|+.| .
T Consensus 17 e~~ililGLd~aGKTTil~~lk~-~~--~~-~~~PT~g~~~e~~~~~~-----------------~~~~~wDlgG----~ 71 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKN-DR--LA-QHQPTQHPTSEELAIGN-----------------IKFTTFDLGG----H 71 (184)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC-CC--CC-CCCCCCCCCEEEEEECC-----------------EEEEEEECCC----C
T ss_conf 14799996588988999999806-99--75-30578788648999999-----------------9999998898----7
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.+-+.+...+ ..+||+||.|||+++
T Consensus 72 ~~~R~lW~~Y---y~~~~~iIfVVDssD 96 (184)
T smart00178 72 QQARRLWKDY---FPEVNGIVYLVDAYD 96 (184)
T ss_pred HHHHHHHHHH---HCCCCEEEEEEECCC
T ss_conf 7788999988---216758999972686
No 94
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.73 E-value=8.7e-08 Score=72.25 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=51.2
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG 84 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G 84 (367)
|=++|++|+||||+++.+.+.. ..+ ...|+-.|+..+.... .++.+.|+.| ..+-
T Consensus 2 ililGLd~aGKTTil~~l~~~~---~~~-~~PT~G~~~~~~~~~~-----------------~~l~~~DlgG----~~~~ 56 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEI---PKK-VAPTVGFTPTKLRLDK-----------------YEVCIFDLGG----GANF 56 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCC---CCC-CCCCCCCCEEEEEECC-----------------EEEEEEECCC----CHHH
T ss_conf 8999008998899999982899---876-5087773179999899-----------------9999998998----7788
Q ss_pred CCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 6632899998730374788501234
Q gi|254780226|r 85 EGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 85 ~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
|.+. -...+++|+||.|||+++
T Consensus 57 R~lW---~~Y~~~~~gIIfVVDssD 78 (167)
T cd04161 57 RGIW---VNYYAEAHGLVFVVDSSD 78 (167)
T ss_pred HHHH---HHHCCCCCEEEEEEECCC
T ss_conf 8999---987347765799985575
No 95
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.71 E-value=1.2e-07 Score=71.22 Aligned_cols=146 Identities=21% Similarity=0.187 Sum_probs=85.4
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 75288878889999874048987366686744883379976855587776421865023357999851223543222466
Q gi|254780226|r 7 IIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKGEG 86 (367)
Q Consensus 7 lvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~G 86 (367)
++|-|+||||||.+.+.+ .......+|.|+++.....+... + .+.++.+.|.||......
T Consensus 1 vvG~~~~GKSsl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~i~D~~g~~~~~~---- 60 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLG-GEFVPEEYETTIIDFYSKTIEVD------------G---KKVKLQIWDTAGQERFRS---- 60 (157)
T ss_pred CCCCCCCCHHHHHHHHHC-CCCCCCCCCCCEEEEEEEEEEEC------------C---EEEEEEEEECCCCHHHHH----
T ss_conf 929499688999999971-98887646871578999999999------------9---999999998589511567----
Q ss_pred CHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 32899998730374788501234542113457767321578898888764332224577777875203204677789999
Q gi|254780226|r 87 LGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQSII 166 (367)
Q Consensus 87 lGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~~~l 166 (367)
--...++.+|++++|.|+..... .+++ + .|-
T Consensus 61 ---~~~~~~~~~~~~i~v~d~~~~~s----------~~~~---------------~-~~~-------------------- 91 (157)
T cd00882 61 ---LRRLYYRGADGIILVYDVTDRES----------FENV---------------K-EWL-------------------- 91 (157)
T ss_pred ---HHHHHHHHCCEEEEEEECCCHHH----------HHHH---------------H-HHH--------------------
T ss_conf ---89999753579999986588888----------9999---------------9-999--------------------
Q ss_pred HHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 98899887587410344313267776210235764101001003430111010134678778864369840332100246
Q gi|254780226|r 167 SSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAAIEA 246 (367)
Q Consensus 167 ~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~E~ 246 (367)
...........+|+++++||.|....+.....+....++...+..++.+||+...
T Consensus 92 -------------------------~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (157)
T cd00882 92 -------------------------LLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGE 146 (157)
T ss_pred -------------------------HHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf -------------------------9999975258984999985356154066889999999998789869998478883
No 96
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.71 E-value=5.6e-07 Score=66.80 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=52.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||=++|++||||||+++.+... .. . -+.+|+-.|+-.+... ..++++-|++| ..+
T Consensus 1 KIlilGl~~sGKTtil~~l~~~-~~--~-~~~pT~G~~~~~i~~~-----------------~~~l~iwD~gG----~~~ 55 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD-EF--M-QPIPTIGFNVETVEYK-----------------NLKFTIWDVGG----KHK 55 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHCC-CC--C-CCCCCCCCCEEEEEEC-----------------CEEEEEEECCC----CCC
T ss_conf 9999998999889999999579-96--8-9778688166999989-----------------88999998999----724
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-+.+...+ .|+|+++|.|||+++
T Consensus 56 ~r~~w~~Y---y~~~~~iIfVvDssd 78 (169)
T cd04158 56 LRPLWKHY---YLNTQAVVFVVDSSH 78 (169)
T ss_pred CCHHHHHH---CCCCCEEEEEEECCH
T ss_conf 46367875---557627999998630
No 97
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.70 E-value=2.8e-07 Score=68.81 Aligned_cols=80 Identities=26% Similarity=0.326 Sum_probs=52.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||=++|++||||||+++.++.... ... .+|+-.|+..+... ..++++-|+|| .
T Consensus 15 ~~KililG~~~sGKTsil~~l~~~~~--~~~--~pT~G~~~~~i~~~-----------------~~~~~iwD~~G----~ 69 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEV--VHT--SPTIGSNVEEIVYK-----------------NIRFLMWDIGG----Q 69 (174)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC--CCC--CCCCCCCEEEEEEC-----------------CEEEEEEECCC----C
T ss_conf 79999998999988999999973992--771--67236046999978-----------------88999998999----8
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.+-+.+...+ .++||++|.|||+++
T Consensus 70 e~~~~~~~~y---~~~a~~ii~VvD~sd 94 (174)
T cd04153 70 ESLRSSWNTY---YTNTDAVILVIDSTD 94 (174)
T ss_pred CCCCCHHHHH---HCCCCEEEEEEECCC
T ss_conf 6566226777---057753799997678
No 98
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.70 E-value=6.1e-07 Score=66.55 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=50.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCC--CCCCCCCCCC----CCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCC
Q ss_conf 4867528887888999987404--8987366686----744883379976855587776421865023357999851223
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT--ASAQAANYPF----CTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~--~~~~~~~ypF----tTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGL 77 (367)
.++++|-+++|||||..++-.. ...+.+...- .-.++.+|+.-- .....-.|+..+..+..+.|+|.||=
T Consensus 2 NiaiiGHvd~GKTTL~~~ll~~tg~i~~~~~~~~~~D~~~~E~eRgiTi~----~~~~~~~~~~~~~~~~~in~iDtPGh 77 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIK----AQTVRLNYKAKDGQEYLLNLIDTPGH 77 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHCCCEEE----EEEEEEEEECCCCCCEEEEEEECCCC
T ss_conf 59999489989899999999985995414573244165176786386687----43368884136787148999989986
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 54322246632899998730374788501234
Q gi|254780226|r 78 VRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 78 v~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.. .-.+...-++.||+.+.||||.+
T Consensus 78 ~d-------F~~~~~~al~~~D~allVVda~~ 102 (179)
T cd01890 78 VD-------FSYEVSRSLAACEGALLLVDATQ 102 (179)
T ss_pred CC-------CHHHHHHHHHHHCEEEEEEECCC
T ss_conf 45-------17789889975442789986477
No 99
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.69 E-value=3.1e-07 Score=68.50 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=53.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
|||=++|++||||||+++.+... .. ...+ +|+-.|...+... ..++++-|++| ..
T Consensus 1 ~KililG~~~sGKTsll~~l~~~-~~-~~~~--pT~g~~~~~~~~~-----------------~~~l~iwD~~G----~~ 55 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLG-EI-VTTI--PTIGFNVETVEYK-----------------NISFTVWDVGG----QD 55 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC-CC-CCCC--CCCCCCEEEEEEC-----------------CEEEEEEECCC----CC
T ss_conf 99999999999989999999729-96-7758--9687017999989-----------------89999997899----72
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 246632899998730374788501234
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
+-+.+...+ .|+|+++|.|||+++
T Consensus 56 ~~r~l~~~Y---~~~a~~iI~VvD~sd 79 (159)
T cd04150 56 KIRPLWRHY---FQNTQGLIFVVDSND 79 (159)
T ss_pred CCCHHHHHH---CCCCCEEEEEEECCC
T ss_conf 146567864---768738999997777
No 100
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.67 E-value=2.3e-08 Score=76.22 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=44.8
Q ss_pred CCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEEEE
Q ss_conf 45401278676778511001210348369997368887744996888874965315760796549889996
Q gi|254780226|r 294 TRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILHFR 364 (367)
Q Consensus 294 ~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~ 364 (367)
-+...+|+|||+.|+||.||||+|+.++.|.+ .| +.+.-+|.|+|||+|++.
T Consensus 8 G~~~~LP~GaT~lDfAy~iht~lG~~~~~a~v-----------------Ng--~~~~l~~~L~~GD~VeIi 59 (60)
T cd01668 8 GEIIELPAGATVLDFAYAIHTEIGNRCVGAKV-----------------NG--KLVPLSTVLKDGDIVEII 59 (60)
T ss_pred CCEEECCCCCCHHHEHHHHCCCHHHEEEEEEE-----------------CC--EECCCCCCCCCCCEEEEE
T ss_conf 97787899981410433554101422689999-----------------99--998987682899999987
No 101
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.65 E-value=4.8e-07 Score=67.26 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=53.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||=++|++||||||+++.++.. .. ... .+|+..|...+... ..++++-|+|| .
T Consensus 9 ~~kililG~~~sGKTsil~~l~~~-~~-~~~--~pTvg~~~~~~~~~-----------------~~~l~iwD~~G----q 63 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLG-QS-VTT--IPTVGFNVETVTYK-----------------NVKFNVWDVGG----Q 63 (168)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC-CC-CCC--CCCCCCEEEEEEEC-----------------CEEEEEEECCC----C
T ss_conf 889999999999989999999669-98-760--26267007999989-----------------88999998999----9
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-+-+.+...+ .++||++|.|||+++
T Consensus 64 e~~r~l~~~y---~~~~~~iifVvDstd 88 (168)
T cd04149 64 DKIRPLWRHY---YTGTQGLIFVVDSAD 88 (168)
T ss_pred CCCCCHHHHH---CCCCCEEEEEEECCC
T ss_conf 7466065764---378866899983776
No 102
>pfam02824 TGS TGS domain. The TGS domain is named after ThrRS, GTPase, and SpoT. Interestingly, TGS domain was detected also at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.60 E-value=6.5e-08 Score=73.10 Aligned_cols=50 Identities=32% Similarity=0.511 Sum_probs=44.7
Q ss_pred CEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEEEE
Q ss_conf 401278676778511001210348369997368887744996888874965315760796549889996
Q gi|254780226|r 296 AWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILHFR 364 (367)
Q Consensus 296 aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~ 364 (367)
...+|+|||+.|+|+.||+++++.|++|.+-. ++++.+|.|+|||+|+|.
T Consensus 10 ~~~lp~GaT~~D~A~~Ih~~lg~~~~~A~VnG-------------------~~v~l~~~L~~gd~V~Ii 59 (60)
T pfam02824 10 VPELPRGSTPEDFAYAIHTDLGKKFIGAKVNG-------------------QRVGLDHVLEDGDVVEIV 59 (60)
T ss_pred EEECCCCCCHHHHHHHHCHHHHHEEEEEEECC-------------------EECCCCCCCCCCCEEEEE
T ss_conf 68789989699999886978641176789998-------------------887621124899999987
No 103
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.59 E-value=3.7e-06 Score=61.31 Aligned_cols=85 Identities=24% Similarity=0.332 Sum_probs=53.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
++||=++|.+||||||+.+.+... .- ...+ +|+-.+.-.+.+. ..+.+ ..++++-|+|| .
T Consensus 3 ~~kIvilG~~~~GKTsil~r~~~~-~f-~~~~--pTiG~~~~~~~~~---------~~~~~---~v~l~iwDtaG----q 62 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFN-EF-VNTV--PTKGFNTEKIKVS---------LGNSK---GITFHFWDVGG----Q 62 (183)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC-CC-CCCC--CCCCEEEEEEEEE---------CCCCC---EEEEEEEECCC----C
T ss_conf 799999999999889999999649-86-7768--7035578999996---------16786---67999997898----7
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-+-+.+...+ .|+||++|.|+|+++
T Consensus 63 e~~r~l~~~Y---~r~a~g~i~V~D~td 87 (183)
T cd04152 63 EKLRPLWKSY---TRCTDGIVFVVDSVD 87 (183)
T ss_pred CCCCEEHHHH---HCCCCEEEEEEECCC
T ss_conf 3451008767---467867899996776
No 104
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.59 E-value=1.5e-06 Score=63.99 Aligned_cols=148 Identities=22% Similarity=0.255 Sum_probs=83.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|.++||||||.+.+... .- ..+|. +|+.++.....+. +++ ...++++.|+||.-.
T Consensus 1 ~Ki~vvG~~~vGKTsli~~~~~~-~f-~~~~~-~Tig~d~~~~~~~----------~~~---~~~~l~iwDt~G~e~--- 61 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDG-KF-DENYK-STIGVDFKSKTIE----------IDG---KTVKLQIWDTAGQER--- 61 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-CC-CCCCC-CCCCEEEEEEEEE----------ECC---EEEEEEEEECCCCHH---
T ss_conf 98999996996899999999709-99-99848-8666479999999----------999---999999997898265---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
=+.+... .+++||++|.|.|...-.. ++. +. .|-
T Consensus 62 -~~~l~~~---~~~~~d~~ilv~d~~~~~S-------------f~~----~~---------~~~---------------- 95 (159)
T cd00154 62 -FRSITPS---YYRGAHGAILVYDITNRES-------------FEN----LD---------KWL---------------- 95 (159)
T ss_pred -HHHHHHH---HHHHCCEEEEECCCCCHHH-------------HHH----HH---------HHH----------------
T ss_conf -7788999---9754127567244898899-------------999----99---------999----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
.. +.. . . -..-|+++++||.|.... .....+...+++.+.+..++.+||
T Consensus 96 ----~~----i~~------~---~-------------~~~~~iilvgnK~DL~~~-~~v~~~~~~~~a~~~~~~~~e~SA 144 (159)
T cd00154 96 ----KE----LKE------Y---A-------------PENIPIILVGNKIDLEDQ-RQVSTEEAQQFAKENGLLFFETSA 144 (159)
T ss_pred ----HH----HHH------H---C-------------CCCCCEEEEEECCCCHHC-CCCCHHHHHHHHHHCCCEEEEECC
T ss_conf ----99----998------6---8-------------988826999974563011-689999999999986997999876
Q ss_pred HHHH
Q ss_conf 0246
Q gi|254780226|r 243 AIEA 246 (367)
Q Consensus 243 ~~E~ 246 (367)
+...
T Consensus 145 k~~~ 148 (159)
T cd00154 145 KTGE 148 (159)
T ss_pred CCCC
T ss_conf 8881
No 105
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.58 E-value=1e-06 Score=65.10 Aligned_cols=78 Identities=24% Similarity=0.279 Sum_probs=51.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||=++|.++||||||++.+.. ... .+. .+|+..|.-.+..+ ..++++-|+|| ..+
T Consensus 1 Kil~lG~~~~GKTsll~~~~~-~~~--~~~-~pTig~~~~~i~~~-----------------~~~~~iwD~~G----~e~ 55 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL-GEV--VTT-IPTIGFNVETVTYK-----------------NLKFQVWDLGG----QTS 55 (158)
T ss_pred CEEEECCCCCCHHHHHHHHHC-CCC--CCC-CCCCCCCEEEEEEC-----------------CEEEEEEECCC----CCC
T ss_conf 999999999989999999970-996--775-78488246999989-----------------88999996798----624
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-+.+...+ .++||++|.|+|+++
T Consensus 56 ~r~~~~~y---~~~~~~ii~VvD~sd 78 (158)
T cd04151 56 IRPYWRCY---YSNTDAIIYVVDSTD 78 (158)
T ss_pred CCHHHHHH---CCCCCEEEEEEECCC
T ss_conf 46278874---667889999974578
No 106
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=98.57 E-value=1.8e-06 Score=63.37 Aligned_cols=147 Identities=22% Similarity=0.215 Sum_probs=80.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||.++|-|+||||||.+.+... . -...| .|.+|.-...- .-.+++ .+.++++.|++|.=.-
T Consensus 1 Ki~vvG~~~vGKTsli~r~~~~-~-f~~~~-----~~t~~~~~~~~------~~~~~~---~~~~~~i~Dt~G~e~~--- 61 (162)
T pfam00071 1 KLVLVGDGGVGKSSLLIRFTQN-K-FPEEY-----IPTIGVDFYTK------TIEVDG---KTVKLQIWDTAGQERF--- 61 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHHC-C-CCCCC-----CCCCEEEEEEE------EEEECC---EEEEEEEEECCCCHHH---
T ss_conf 9899997997799999999619-9-99874-----77413556789------999999---9999999978987204---
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
..+ --.-+++||++|.|.|+...+. ++.+.
T Consensus 62 -~~~---~~~~~~~ad~~iivfd~~~~~S--------------------------------~~~i~-------------- 91 (162)
T pfam00071 62 -RAL---RPLYYRGAQGFLLVYDITSRDS--------------------------------FENVK-------------- 91 (162)
T ss_pred -HHH---HHHHHCCCCCCEEECCCCCHHH--------------------------------HHHHH--------------
T ss_conf -678---8998625765504234898899--------------------------------99999--------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 99998899887587410344313267776210235764101001003430111010134678778864369840332100
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAA 243 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~ 243 (367)
.....+.. .. . ..-|+++|+||.|.... ..+..+..++++.+.+.+++.+||+
T Consensus 92 ----~~~~~i~~-----------------~~-~----~~~piilvgnK~Dl~~~-~~i~~~e~~~~a~~~~~~y~e~Sak 144 (162)
T pfam00071 92 ----KWLEEILR-----------------HA-D----DNVPIVLVGNKCDLEDQ-RVVSTEEGEALAKELGLPFMETSAK 144 (162)
T ss_pred ----HHHHHHHH-----------------HC-C----CCCEEEEEEECCCHHHC-CCCCHHHHHHHHHHHCCEEEEECCC
T ss_conf ----99999998-----------------57-9----88628899752474651-8899999999999809979997378
Q ss_pred HHH
Q ss_conf 246
Q gi|254780226|r 244 IEA 246 (367)
Q Consensus 244 ~E~ 246 (367)
.-.
T Consensus 145 ~g~ 147 (162)
T pfam00071 145 TNE 147 (162)
T ss_pred CCC
T ss_conf 882
No 107
>TIGR00691 spoT_relA RelA/SpoT family protein; InterPro: IPR004811 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homolog to SpoT and RelA appears responsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process.
Probab=98.56 E-value=1.1e-07 Score=71.67 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=52.8
Q ss_pred CCEEEECCCCCCCCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCC-CEEEECCCCE
Q ss_conf 964661057875454012786767785110012103483699973688877449968888749653157-6079654988
Q gi|254780226|r 282 DLITYFTVGPKETRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEG-KEYIVKDGDI 360 (367)
Q Consensus 282 ~li~~~tvg~~e~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~G-kdy~v~DGDV 360 (367)
.-|.+|| -+.+...+|.|||+.|+||.||||+|..-..|.+=+ |... -|+.|+.|||
T Consensus 380 ~~i~VFt---P~G~~~~Lp~Gs~~vDfAY~vHtd~G~~~~ga~~ng-------------------~~~~Sl~~~L~nG~v 437 (741)
T TIGR00691 380 EEIYVFT---PKGDVVELPSGSTPVDFAYAVHTDVGHKCTGAKVNG-------------------KIVPSLDKELENGDV 437 (741)
T ss_pred CCCEEEC---CCEEEEEECCCCCHHHHHHHHCHHHCCEEEEEEECC-------------------EEECCCCEEECCCCE
T ss_conf 5424636---830088746899566778763302434367468978-------------------880344501037868
Q ss_pred EEEECC
Q ss_conf 999637
Q gi|254780226|r 361 LHFRFN 366 (367)
Q Consensus 361 i~~~fn 366 (367)
|+|-|+
T Consensus 438 VEi~t~ 443 (741)
T TIGR00691 438 VEIITG 443 (741)
T ss_pred EEEEEC
T ss_conf 999857
No 108
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=98.56 E-value=8.6e-08 Score=72.32 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=50.4
Q ss_pred CCEEEECCCCCCCCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEE
Q ss_conf 96466105787545401278676778511001210348369997368887744996888874965315760796549889
Q gi|254780226|r 282 DLITYFTVGPKETRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDIL 361 (367)
Q Consensus 282 ~li~~~tvg~~e~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi 361 (367)
+-|-+||= .-+-..+|+|||+.|+||.||||+|...+-|.| .| |.+--+|.|+.||+|
T Consensus 386 deIyVFTP---kGdii~LP~GsTplDFAYaIHTeiG~~c~GAkV-----------------NG--~~vPL~t~LknGD~V 443 (702)
T PRK11092 386 DEIYVFTP---EGRIVELPAGATPVDFAYAVHTDIGHACVGARV-----------------DR--QPYPLSQPLTSGQTV 443 (702)
T ss_pred CEEEEECC---CCCEEECCCCCCEEHHHHHHCCHHCCEEEEEEE-----------------CC--EECCCCCCCCCCCEE
T ss_conf 64999879---996798889981001134316410121678999-----------------99--988998716789888
Q ss_pred EEEC
Q ss_conf 9963
Q gi|254780226|r 362 HFRF 365 (367)
Q Consensus 362 ~~~f 365 (367)
+|.-
T Consensus 444 EIiT 447 (702)
T PRK11092 444 EIIT 447 (702)
T ss_pred EEEE
T ss_conf 9983
No 109
>PRK10872 relA GDP/GTP pyrophosphokinase; Provisional
Probab=98.50 E-value=1.8e-07 Score=70.18 Aligned_cols=62 Identities=24% Similarity=0.224 Sum_probs=50.1
Q ss_pred CCEEEECCCCCCCCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEE
Q ss_conf 96466105787545401278676778511001210348369997368887744996888874965315760796549889
Q gi|254780226|r 282 DLITYFTVGPKETRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDIL 361 (367)
Q Consensus 282 ~li~~~tvg~~e~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi 361 (367)
+-|-+||= .-+-..+|+||||.|+||.||||+|..-+=|.|=. |.+--+|.|+.||+|
T Consensus 404 d~VyVFTP---kGdvi~LP~GaTplDFAYaIHTevG~~cvGAKVNG-------------------kivPL~~~L~nGD~V 461 (743)
T PRK10872 404 DRVYVFTP---KGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGG-------------------RIVPFTYQLQMGDQI 461 (743)
T ss_pred CEEEEECC---CCCEEECCCCCEEEHHHHHHCCCCHHEEEEEEECC-------------------EECCCCCEECCCCEE
T ss_conf 64999889---98779879997230313543473032188999999-------------------987887452688789
Q ss_pred EEEC
Q ss_conf 9963
Q gi|254780226|r 362 HFRF 365 (367)
Q Consensus 362 ~~~f 365 (367)
+|.=
T Consensus 462 EIiT 465 (743)
T PRK10872 462 EIIT 465 (743)
T ss_pred EEEC
T ss_conf 9953
No 110
>KOG1424 consensus
Probab=98.43 E-value=2.5e-07 Score=69.22 Aligned_cols=69 Identities=28% Similarity=0.378 Sum_probs=45.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCC-CCC
Q ss_conf 2486752888788899998740489873666867448833799768555877764218650233579998512235-432
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLV-RGA 81 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv-~gA 81 (367)
+.||+||+||||||+..|+|-|...+-+...|=-|-. .-++.+. -.+-|.|.|||| |+-
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKH--FQTi~ls------------------~~v~LCDCPGLVfPSf 374 (562)
T KOG1424 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKH--FQTIFLS------------------PSVCLCDCPGLVFPSF 374 (562)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCC--EEEEEEC------------------CCCEECCCCCCCCCCC
T ss_conf 5887524888762777888755744666348987640--3789707------------------8764447887215687
Q ss_pred CCCCCCHHHHHH
Q ss_conf 224663289999
Q gi|254780226|r 82 SKGEGLGNQFLA 93 (367)
Q Consensus 82 ~~G~GlGN~FL~ 93 (367)
+.++. -.+|+
T Consensus 375 ~~~r~--emvl~ 384 (562)
T KOG1424 375 SPTRA--EMVLN 384 (562)
T ss_pred CCHHH--HHHHH
T ss_conf 71068--99881
No 111
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.43 E-value=2e-06 Score=63.05 Aligned_cols=80 Identities=26% Similarity=0.435 Sum_probs=57.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||=++|++|+||||+++.+... .. .... .|+-+|+-.+.+.+ .++++.|++| .
T Consensus 19 ~~kIlilGld~aGKTTil~~l~~~-~~-~~~~--PT~Gfn~e~i~~~~-----------------~~~~~wDvgG----~ 73 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD-RL-AQHV--PTLHPTSEELTIGN-----------------IKFKTFDLGG----H 73 (190)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCC-CC-CEEC--CCCCCCEEEEEECC-----------------EEEEEEECCC----C
T ss_conf 048999906999889999998079-95-3152--65587459999899-----------------9999998999----8
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
..-+.+-..+ .++||+||.|||+++
T Consensus 74 ~~~R~lW~~Y---~~~~~~iIfVVDssD 98 (190)
T cd00879 74 EQARRLWKDY---FPEVDGIVFLVDAAD 98 (190)
T ss_pred CCCCCCHHHH---HHCCCEEEEEEECCC
T ss_conf 4555438888---431137999997767
No 112
>KOG2484 consensus
Probab=98.42 E-value=3.8e-07 Score=67.96 Aligned_cols=79 Identities=29% Similarity=0.467 Sum_probs=53.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
++++|+||+||||||++.|+|.......++|.|=-| .- +-.+.- --.|.|+|-||.|+.-
T Consensus 252 sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT--------~s-------mqeV~L-----dk~i~llDsPgiv~~~ 311 (435)
T KOG2484 252 SIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT--------RS-------MQEVKL-----DKKIRLLDSPGIVPPS 311 (435)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCH--------HH-------HHHEEC-----CCCCEECCCCCEEECC
T ss_conf 168643248887716999998774046677875500--------35-------453005-----6773230478632067
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEE
Q ss_conf 224663289999873037478850
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVL 105 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVV 105 (367)
....+ =-.+|+|.-+-+|+
T Consensus 312 ~~~~~-----~~~Lrn~~~i~~~~ 330 (435)
T KOG2484 312 IDEKD-----ALALRNCIPIGKVA 330 (435)
T ss_pred CCCCC-----HHHHHCCCCCCCCC
T ss_conf 78632-----22442366620015
No 113
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=98.42 E-value=5.3e-07 Score=66.99 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=51.9
Q ss_pred CCEEEECCCCCCCCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEE
Q ss_conf 96466105787545401278676778511001210348369997368887744996888874965315760796549889
Q gi|254780226|r 282 DLITYFTVGPKETRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDIL 361 (367)
Q Consensus 282 ~li~~~tvg~~e~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi 361 (367)
|.+.+|| |+ -+...+|+|||+.|+||.||||+|..-+-|.+- | |.+--+|.|+.||+|
T Consensus 387 d~VyvfT--Pk-G~vi~LP~GatplDFAY~vHt~iG~~c~gAkVn-----------------G--~ivpl~~~Lk~Gd~V 444 (701)
T COG0317 387 DRVYVFT--PK-GKVIDLPKGATPLDFAYAVHTDIGHRCIGAKVN-----------------G--RIVPLTTKLQTGDQV 444 (701)
T ss_pred CEEEEEC--CC-CCEEECCCCCCHHHHHHHHHCHHCCEEEEEEEC-----------------C--EEECCCEECCCCCEE
T ss_conf 5289988--99-977967999940421243304002504677889-----------------9--981465034789989
Q ss_pred EEECC
Q ss_conf 99637
Q gi|254780226|r 362 HFRFN 366 (367)
Q Consensus 362 ~~~fn 366 (367)
+|-++
T Consensus 445 EIit~ 449 (701)
T COG0317 445 EIITS 449 (701)
T ss_pred EEEEC
T ss_conf 99948
No 114
>pfam00350 Dynamin_N Dynamin family.
Probab=98.36 E-value=6.9e-07 Score=66.21 Aligned_cols=101 Identities=24% Similarity=0.268 Sum_probs=60.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE-------------EECCCH-----HHHHHHH--------H
Q ss_conf 8675288878889999874048987366686744883379-------------976855-----5877764--------2
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE-------------VAVPDP-----RMHKLAE--------I 58 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~-------------~~v~d~-----~~~~l~~--------~ 58 (367)
|.++|--++|||||+|||+|..-...+.-| ||--|..=. ....+. .++.+.. .
T Consensus 1 ivvvG~~ssGKSSliNALlG~~ilP~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (168)
T pfam00350 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGP-TTRRPLVLRLGEEPGAIPGAVKVEYKDGLKKFEDFSELREEIEDETDKI 79 (168)
T ss_pred CEEECCCCCCHHHHHHHHHCCCCCCCCCCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 989917889899999999788736889976-5167189995788765554121112333001488999999999755431
Q ss_pred CCC-------------CEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 186-------------502335799985122354322246632899998730374788501234
Q gi|254780226|r 59 AES-------------KDLVPTRMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 59 ~~~-------------~~~~p~~i~~iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
... .......+.++|.||+.....+.+ +--.+-++.+|+++.|++|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~lvDtPGl~s~~~~~~---~~t~~~i~~~d~il~V~~a~~ 140 (168)
T pfam00350 80 SGTGKGISSEPIILEILSPLVPGLTLVDTPGLDSVAVGDQ---DLTEEYIKPADIILAVVDANH 140 (168)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCH---HHHHHHHHHCCEEEEEEECCC
T ss_conf 3457787771089983688888818982798654443369---999999853866999984695
No 115
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.36 E-value=1.5e-05 Score=57.13 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=86.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE--EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 24867528887888999987404898736668674488337--9976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG--EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g--~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
+||.++|-++||||++.+..++. .-...+|+ +||..... .+.++ ++ ...+++-|+||--
T Consensus 5 fk~~VlG~~~VGKTsLi~rf~~~-~f~~~~y~-~Ti~~~~~~k~v~v~------------g~---~~~L~i~Dt~g~e-- 65 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGR-SFSLNAYS-PTIKPRYAVNTVEVY------------GQ---EKYLILREVGEDE-- 65 (169)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC-CCCCCCCC-CCCCCEEEEEEEEEC------------CE---EEEEEEEECCCCH--
T ss_conf 99999999998899999999649-99866656-754661899999989------------99---9999998556532--
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV 160 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~ 160 (367)
....+... .+|+||++|.|-|.+.-+ -++++ .
T Consensus 66 --~~~~l~~~---~~~~ad~~ilVyDit~~~-------------SF~~i-------------------~----------- 97 (169)
T cd01892 66 --VAILLNDA---ELAACDVACLVYDSSDPK-------------SFSYC-------------------A----------- 97 (169)
T ss_pred --HHHHHHHH---HHCCCCEEEEEEECCCHH-------------HHHHH-------------------H-----------
T ss_conf --35566588---754698899999799878-------------99999-------------------9-----------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCC-CC
Q ss_conf 78999998899887587410344313267776210235764101001003430111010134678778864369840-33
Q gi|254780226|r 161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEM-II 239 (367)
Q Consensus 161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~-i~ 239 (367)
. .++. . ......|+++|+||+|.+..+ ....++.++++.+.+... +.
T Consensus 98 ---~-------~~~~------~---------------~~~~~iP~vlVgNK~DL~~~r-qV~~~e~~~~a~~~~~~~~~e 145 (169)
T cd01892 98 ---E-------VYKK------Y---------------FMLGEIPCLFVAAKADLDEQQ-QRYEVQPDEFCRKLGLPPPLH 145 (169)
T ss_pred ---H-------HHHH------H---------------HCCCCCCEEEEEECCCCCCCC-CCCHHHHHHHHHHCCCCCCEE
T ss_conf ---9-------9997------0---------------056898189998865542037-546776999999839996669
Q ss_pred CCCHHHHHH
Q ss_conf 210024665
Q gi|254780226|r 240 ISAAIEAEI 248 (367)
Q Consensus 240 isa~~E~ei 248 (367)
+||+....+
T Consensus 146 ~SAktg~nv 154 (169)
T cd01892 146 FSSKLGDSS 154 (169)
T ss_pred EEEECCCCH
T ss_conf 983279898
No 116
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.35 E-value=1.9e-05 Score=56.49 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=82.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|-++||||+|.+.++.. .- ...|+ +|+........+ .+++. ..++++.|.||--.
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~-~f-~~~~~-~Ti~~~~~~~~i----------~~~~~---~~~l~iwDt~G~e~--- 61 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG-KF-SEQYK-STIGVDFKTKTI----------EVDGK---RVKLQIWDTAGQER--- 61 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-CC-CCCCC-CCCCEEEEEEEE----------EECCE---EEEEEEEECCCCHH---
T ss_conf 98999998997799999999419-99-99868-845666677999----------99999---99999996799446---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
=+.+- -...++||++|.|.|...-.. .+ .++ .|-
T Consensus 62 -~~~l~---~~~~~~~~~~ilvfdi~~~~S----------f~---------------~i~-~w~---------------- 95 (164)
T smart00175 62 -FRSIT---SSYYRGAVGALLVYDITNRES----------FE---------------NLK-NWL---------------- 95 (164)
T ss_pred -HHHHH---HHHHCCCCEEEEECCCCCHHH----------HH---------------HHH-HHH----------------
T ss_conf -64779---988336653688436899899----------99---------------999-999----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
.. +. .. . ...-|+++++||.|....+ ....+...+++.+.+..++.+||
T Consensus 96 ----~~----i~------~~------------~----~~~~piilvgnK~Dl~~~r-~V~~~e~~~~a~~~~~~~~e~SA 144 (164)
T smart00175 96 ----KE----LR------EY------------A----DPNVVIMLVGNKSDLEDQR-QVSREEAEAFAEEHGLPFFETSA 144 (164)
T ss_pred ----HH----HH------HH------------C----CCCCCEEECCCCCCHHHHC-CCCHHHHHHHHHHCCCEEEEECC
T ss_conf ----99----99------86------------7----9998255116456856518-79999999999984997999831
Q ss_pred HHHH
Q ss_conf 0246
Q gi|254780226|r 243 AIEA 246 (367)
Q Consensus 243 ~~E~ 246 (367)
+...
T Consensus 145 k~~~ 148 (164)
T smart00175 145 KTNT 148 (164)
T ss_pred CCCC
T ss_conf 6690
No 117
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.35 E-value=1.5e-05 Score=57.14 Aligned_cols=150 Identities=20% Similarity=0.250 Sum_probs=86.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||.++|-++||||||+...+.. . -...|+ .|+.++.....+. .++. ..++++.|.||.-.
T Consensus 1 ~KivvvG~~~vGKTsli~r~~~~-~-f~~~~~-~ti~~~~~~~~~~----------~~~~---~~~l~iwDt~g~~~--- 61 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDD-T-FDPDLA-ATIGVDFKVKTLT----------VDGK---KVKLAIWDTAGQER--- 61 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCCCCEEEEEE----------ECCE---EEEEEEEECCCCCC---
T ss_conf 98999997995799999999639-9-999848-7313342389999----------9999---99999999999842---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
-+.+-.. .+|+||+++.|.|+..- +-++-+ + .|
T Consensus 62 -~~~~~~~---~~~~a~~~ilvfd~~~~-------------~Sf~~i------------~-~~----------------- 94 (161)
T cd01863 62 -FRTLTSS---YYRGAQGVILVYDVTRR-------------DTFTNL------------E-TW----------------- 94 (161)
T ss_pred -CCCCHHH---HHHHCCEEEEEEECCCH-------------HHHHHH------------H-HH-----------------
T ss_conf -3534224---41321534899767826-------------569999------------9-99-----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
...+. .+..-..-|+++|+||.|.+ +.....+...+++.+.+..++.+||
T Consensus 95 -------~~~i~---------------------~~~~~~~~~~ilVgnK~D~~--~~~v~~~~~~~~a~~~~~~y~e~Sa 144 (161)
T cd01863 95 -------LNELE---------------------TYSTNNDIVKMLVGNKIDKE--NREVTREEGLKFARKHNMLFIETSA 144 (161)
T ss_pred -------HHHHH---------------------HHCCCCCCEEEEEEECCCCC--CCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf -------99999---------------------85688887378873104400--0689999999999986999999715
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
+....+
T Consensus 145 k~g~nV 150 (161)
T cd01863 145 KTRDGV 150 (161)
T ss_pred CCCCCH
T ss_conf 868159
No 118
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.32 E-value=1.7e-05 Score=56.79 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=84.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
.||-++|-++||||+|.+..+.. . =..+| .|.+|...... -..++. ..++++.|.||--.-
T Consensus 1 fKvvlvGd~~VGKTsli~r~~~~-~-F~~~y-----~pTi~~~~~~~-------~~~~~~---~v~l~iwDtaG~e~~-- 61 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYD-E-FVEDY-----EPTKADSYRKK-------VVLDGE---DVQLNILDTAGQEDY-- 61 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCC-----CCCCCCEEEEE-------EEECCE---EEEEEEEECCCCHHH--
T ss_conf 97999999998899999999719-8-98774-----88544168999-------999999---999999989886624--
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
+.+- -..+|+||++|.|.|...-+. + +.+..-|++..+
T Consensus 62 --~~l~---~~~~~~a~~~ilvydvt~~~S-------------f------------~~~~~~~~~~~~------------ 99 (164)
T cd04139 62 --AAIR---DNYHRSGEGFLLVFSITDMES-------------F------------TATAEFREQILR------------ 99 (164)
T ss_pred --HHHH---HHHHHHCCEEEEEEECCCHHH-------------H------------HHHHHHHHHHHH------------
T ss_conf --8899---998863768899997797788-------------9------------999999999998------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
.-.. ..-|+++|+||+|.... .....++.++++.+.+..++-+||
T Consensus 100 ------------------------------~~~~----~~~piilVgNK~DL~~~-r~v~~~e~~~~a~~~~~~~~E~SA 144 (164)
T cd04139 100 ------------------------------VKDD----DNVPLLLVGNKCDLEDK-RQVSSEEAANLARQWGVPYVETSA 144 (164)
T ss_pred ------------------------------HHCC----CCCCEEEEEEEHHHHHC-CCCCHHHHHHHHHHCCCEEEEECC
T ss_conf ------------------------------6087----88636987330323341-778999999999983998999826
Q ss_pred HHHH
Q ss_conf 0246
Q gi|254780226|r 243 AIEA 246 (367)
Q Consensus 243 ~~E~ 246 (367)
+...
T Consensus 145 k~g~ 148 (164)
T cd04139 145 KTRQ 148 (164)
T ss_pred CCCC
T ss_conf 8790
No 119
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.29 E-value=2.7e-05 Score=55.44 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=85.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
|||-++|-++||||+|....+.. . -...|. .|+......-.+. .++ ...++++.|.+|.-
T Consensus 1 lKivvvG~~~vGKTSLi~r~~~~-~-f~~~y~-pTig~~~~~k~~~----------~~~---~~~~l~iwDt~G~~---- 60 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG-R-FVSKYL-PTIGIDYGVKKVS----------VRN---KEVRVNFFDLSGHP---- 60 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCEEEEEEEEE----------ECC---EEEEEEEEECCCCH----
T ss_conf 98999995995689999999639-9-999858-9765577799999----------999---99999999899976----
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
+-+.+-+. .+++||++|.|-|+..-.. .+ +|..|..+..
T Consensus 61 ~~~~~~~~---~~~~ad~~ilvydit~~~S----------f~-------~l~~w~~~~~--------------------- 99 (168)
T cd04119 61 EYLEVRNE---FYKDTQGVLLVYDVTDRQS----------FE-------ALDSWLKEMK--------------------- 99 (168)
T ss_pred HHHHHHHH---HHHHCCEEEEEECCCCHHH----------HH-------HHHHHHHHHH---------------------
T ss_conf 47899999---9874778899950897444----------89-------9999999999---------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
.++ ........-|+++++||.|....+ ....+...+++.+.+..++-+||
T Consensus 100 --------~~~---------------------~~~~~~~~~~~ilvgnK~Dl~~~r-~v~~~~~~~~a~~~~~~~~E~Sa 149 (168)
T cd04119 100 --------QEG---------------------GPHGNMENIVVVVCANKIDLTKHR-AVSEDEGRLWAESKGFKYFETSA 149 (168)
T ss_pred --------HHH---------------------CCCCCCCCCEEEEEEEECCCCCCC-CCCHHHHHHHHHHCCCEEEEECC
T ss_conf --------982---------------------453456686299985403444257-88999999999986998999885
Q ss_pred HHH
Q ss_conf 024
Q gi|254780226|r 243 AIE 245 (367)
Q Consensus 243 ~~E 245 (367)
+.-
T Consensus 150 k~g 152 (168)
T cd04119 150 CTG 152 (168)
T ss_pred CCC
T ss_conf 779
No 120
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.26 E-value=1.1e-06 Score=64.87 Aligned_cols=57 Identities=26% Similarity=0.479 Sum_probs=38.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC-----CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCC
Q ss_conf 48675288878889999874048-----9873666867448833799768555877764218650233579998512235
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTA-----SAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLV 78 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~-----~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv 78 (367)
++=+||.+|||||||||++.+.. .+-++.||=||.+.+ ++|= .+ ...++|.||++
T Consensus 156 dvyvvG~tNvGKSTliN~Ll~~~~~~~~~~T~S~~PGTTL~~i----~i~l---------~~-------~~~i~DTPGi~ 215 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI----EIPL---------DD-------GHSLYDTPGII 215 (360)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCE----EEEC---------CC-------CCEEECCCCCC
T ss_conf 5899916866589999999876167777236458998533307----8753---------89-------95574577655
Q ss_pred CC
Q ss_conf 43
Q gi|254780226|r 79 RG 80 (367)
Q Consensus 79 ~g 80 (367)
..
T Consensus 216 ~~ 217 (360)
T TIGR03597 216 NS 217 (360)
T ss_pred CH
T ss_conf 74
No 121
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.23 E-value=6.3e-05 Score=53.00 Aligned_cols=147 Identities=22% Similarity=0.306 Sum_probs=85.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 4867528887888999987404898736668674488337-997685558777642186502335799985122354322
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
||-++|-++||||+|.+..... .=..+|. +|+..+.. .+. .+++ ...+++.|.||--.-.+
T Consensus 1 Kiv~vGd~~VGKTsli~rf~~~--~f~~~y~-~T~~~~~~~~~~------------v~~~---~~~l~iwDtaG~e~~~~ 62 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTK--RFIGEYD-PNLESLYSRQVT------------IDGE---QVSLEILDTAGQQQADT 62 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHC--CCCCCCC-CCCCCEEEEEEE------------ECCE---EEEEEEEECCCCCCCCH
T ss_conf 9999998997789999999749--8998759-955630579999------------9999---99999992898501220
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
......+|.||++|.|-|...-+. + +.++ .|
T Consensus 63 ------~~~~~~~~~a~~~ilvydit~~~S-------------f------------~~~~-~~----------------- 93 (165)
T cd04146 63 ------EQLERSIRWADGFVLVYSITDRSS-------------F------------DEIS-QL----------------- 93 (165)
T ss_pred ------HHHHHHCCCCCEEEEEEECCCHHH-------------H------------HHHH-HH-----------------
T ss_conf ------125543045878999986588899-------------9------------9999-99-----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
...+.+ .... ...-|+++|+||.|....+ ....++.+++|.+.+..++-+||
T Consensus 94 -------~~~i~~------------------~~~~--~~~~piilVGNK~DL~~~r-~Vs~ee~~~~a~~~~~~f~E~SA 145 (165)
T cd04146 94 -------KQLIRE------------------IKKR--DREIPVILVGNKADLLHYR-QVSTEEGEKLASELGCLFFEVSA 145 (165)
T ss_pred -------HHHHHH------------------HHCC--CCCCEEEEECCCCCCCCCC-CCCHHHHHHHHHHCCCEEEEEEC
T ss_conf -------999999------------------8466--9995399844554521036-77999999999981998999752
Q ss_pred HHH
Q ss_conf 024
Q gi|254780226|r 243 AIE 245 (367)
Q Consensus 243 ~~E 245 (367)
+..
T Consensus 146 k~~ 148 (165)
T cd04146 146 AED 148 (165)
T ss_pred CCC
T ss_conf 087
No 122
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.23 E-value=3.5e-05 Score=54.69 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=85.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE--EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 24867528887888999987404898736668674488337--9976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG--EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g--~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
+||-++|-++||||||.+.++.. .-..+|+-| +....- .+.+ ++. ...+++.|.||.-.
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~--~f~~~~~~t-i~~~~~~k~i~~------------~~~---~~~l~iwDt~G~~~- 61 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVEN--KFNEKHEST-TQASFFQKTVNI------------GGK---RIDLAIWDTAGQER- 61 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC--CCCCCCCCC-CEEEEEEEEEEE------------CCE---EEEEEEEECCCCCC-
T ss_conf 98999999996799999999839--899876775-264799999999------------999---99999995899730-
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV 160 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~ 160 (367)
-+.+...+ +++||+++.|.|...-+. ++. ++ .|
T Consensus 62 ---~~~~~~~~---~~~a~~~ilv~d~t~~~S-------------f~~------------i~-~~--------------- 94 (162)
T cd04123 62 ---YHALGPIY---YRDADGAILVYDITDADS-------------FQK------------VK-KW--------------- 94 (162)
T ss_pred ---CCCCCHHH---EECCCEEEEEEECCCHHH-------------HHH------------HH-HH---------------
T ss_conf ---35563133---011445799963899899-------------999------------99-99---------------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 78999998899887587410344313267776210235764101001003430111010134678778864369840332
Q gi|254780226|r 161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIII 240 (367)
Q Consensus 161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~i 240 (367)
+.+ ++.. . + ..-|+++++||.|.... ..+..++..+++.+.+..++.+
T Consensus 95 ------------~~~---i~~~-----------~-~----~~~~iilvgnK~Dl~~~-r~v~~~e~~~~a~~~~~~y~e~ 142 (162)
T cd04123 95 ------------IKE---LKQM-----------R-G----NNISLVIVGNKIDLERQ-RVVSKSEAEEYAKSVGAKHFET 142 (162)
T ss_pred ------------HHH---HHHH-----------C-C----CCCCEEEECCCCCCHHH-CCCCHHHHHHHHHHCCCEEEEE
T ss_conf ------------999---9987-----------6-9----99746866332132540-8889999999999829989998
Q ss_pred CCHHHH
Q ss_conf 100246
Q gi|254780226|r 241 SAAIEA 246 (367)
Q Consensus 241 sa~~E~ 246 (367)
||+...
T Consensus 143 Sak~g~ 148 (162)
T cd04123 143 SAKTGK 148 (162)
T ss_pred ECCCCC
T ss_conf 127881
No 123
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.21 E-value=3.9e-05 Score=54.41 Aligned_cols=146 Identities=18% Similarity=0.241 Sum_probs=81.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||-|+|-++||||+|.+.+... . =..+|. |..|...... -.+++ ...++++.|+||.-.
T Consensus 1 Ki~ivG~~~vGKTsli~r~~~~-~-f~~~~~-----pTi~~~~~~~-------~~~~~---~~~~l~i~Dt~g~~~---- 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG-T-FVEEYD-----PTIEDSYRKT-------IVVDG---ETYTLDILDTAGQEE---- 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-----CCEEEEEEEE-------EEECC---EEEEEEEEECCCCHH----
T ss_conf 9999996996799999999619-5-998778-----8300489999-------99766---999999997999623----
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
-+++=. ..+++||+++.|.|+...+. ++. +. .|
T Consensus 60 ~~~~~~---~~~~~a~~~ilvfd~~~~~S-------------f~~------------i~-~~------------------ 92 (160)
T cd00876 60 FSAMRD---LYIRQGDGFILVYSITDRES-------------FEE------------IK-GY------------------ 92 (160)
T ss_pred HHHHHH---HHHHHCCEEEEEECCCCHHH-------------HHH------------HH-HH------------------
T ss_conf 557889---99764368999732898789-------------999------------99-99------------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 99998899887587410344313267776210235764101001003430111010134678778864369840332100
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAA 243 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~ 243 (367)
+. + +....--..-|+++++||.|..... .+..+...+++.+.+..++.+||+
T Consensus 93 ----------------------~~-~----i~~~~~~~~~piilvgnK~Dl~~~~-~V~~~e~~~~a~~~~~~y~e~Sak 144 (160)
T cd00876 93 ----------------------RE-Q----ILRVKDDEDIPIVLVGNKCDLENER-QVSKEEGKALAKEWGCPFIETSAK 144 (160)
T ss_pred ----------------------HH-H----HHHHHCCCCCEEEEEEECCCCHHCC-CCCHHHHHHHHHHCCCEEEEECCC
T ss_conf ----------------------99-9----9997287886299999745622307-899999999999849979998479
Q ss_pred HH
Q ss_conf 24
Q gi|254780226|r 244 IE 245 (367)
Q Consensus 244 ~E 245 (367)
.-
T Consensus 145 ~g 146 (160)
T cd00876 145 DN 146 (160)
T ss_pred CC
T ss_conf 89
No 124
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.21 E-value=6.9e-05 Score=52.71 Aligned_cols=149 Identities=19% Similarity=0.302 Sum_probs=87.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE--EECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 248675288878889999874048987366686744883379--976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE--VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~--~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
|||-++|-++||||+|+...+.. .-.-.+|. +||...... +.+ ++ ...++++.|.||--.
T Consensus 1 ~KIv~vGd~~VGKTsli~r~~~~-~f~~~~~~-~Ti~~~~~~k~~~~------------~~---~~v~l~iwDtaG~e~- 62 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDG-AFLNGNFI-ATVGIDFRNKVVTV------------DG---VKVKLQIWDTAGQER- 62 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-CCCCCCCC-CCCCEEEEEEEEEE------------CC---EEEEEEEEECCCCCC-
T ss_conf 98999994998799999999959-78999867-76524779999999------------99---999999997998633-
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV 160 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~ 160 (367)
-+.+-. ...|+||++|.|.|...-+. .+. +. .|
T Consensus 63 ---~~~l~~---~~~~~a~~~ilvydit~~~S----------f~~---------------l~-~w--------------- 95 (191)
T cd04112 63 ---FRSVTH---AYYRDAHALLLLYDITNKAS----------FDN---------------IR-AW--------------- 95 (191)
T ss_pred ---CCCCHH---HHHHCCCEEEEEEECCCHHH----------HHH---------------HH-HH---------------
T ss_conf ---464647---77117777899972798899----------999---------------99-99---------------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 78999998899887587410344313267776210235764101001003430111010134678778864369840332
Q gi|254780226|r 161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIII 240 (367)
Q Consensus 161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~i 240 (367)
+++ ++. ... ..-|+++|+||+|..... ....++..+++.+.+..++-+
T Consensus 96 ------------~~~---i~~----~~~------------~~~~iilVGNK~DL~~~r-~V~~~e~~~~a~~~~~~f~Et 143 (191)
T cd04112 96 ------------LTE---IKE----YAQ------------EDVVIMLLGNKADMSGER-VVKREDGERLAKEYGVPFMET 143 (191)
T ss_pred ------------HHH---HHH----HCC------------CCCEEEEECCCCCCCCCC-CCCHHHHHHHHHHCCCEEEEE
T ss_conf ------------999---998----666------------785389861246553026-799999999999829979998
Q ss_pred CCHHHHHH
Q ss_conf 10024665
Q gi|254780226|r 241 SAAIEAEI 248 (367)
Q Consensus 241 sa~~E~ei 248 (367)
||+....+
T Consensus 144 SAkt~~nI 151 (191)
T cd04112 144 SAKTGLNV 151 (191)
T ss_pred CCCCCCCH
T ss_conf 54898097
No 125
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.21 E-value=6.6e-05 Score=52.85 Aligned_cols=149 Identities=18% Similarity=0.176 Sum_probs=85.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||-++|-++||||+|.+..+.. .- ..+| .|.+|.-... +.. ..++++ .++++.|.||--.
T Consensus 7 ~~KivllGd~~VGKTsli~r~~~~-~f-~~~~-----~~Tig~d~~~-----k~i-~~~~~~---v~l~iwDtaG~e~-- 68 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQG-LF-PPGQ-----GATIGVDFMI-----KTV-EIKGEK---IKLQIWDTAGQER-- 68 (169)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHC-CC-CCCC-----CCCCCEEEEE-----EEE-EECCEE---EEEEEEECCCCCC--
T ss_conf 989999998997999999999859-89-9986-----7741247899-----999-999999---9999998999844--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
=+.+- -...|+||+++.|.|...-.. + +.+. .|-
T Consensus 69 --~~~l~---~~~~~~a~~~ilvydvt~~~S-------------f------------~~l~-~w~--------------- 102 (169)
T cd04114 69 --FRSIT---QSYYRSANALILTYDITCEES-------------F------------RCLP-EWL--------------- 102 (169)
T ss_pred --CCCCH---HHHHHCCCEEEEEECCCCHHH-------------H------------HHHH-HHH---------------
T ss_conf --45155---777423664599814898889-------------9------------9999-999---------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
..+.+ .. . ..-|+++|+||.|.... .....+..++++.+.+..++-+|
T Consensus 103 ---------~~i~~----------~~--------~----~~~~~ilVGNK~DL~~~-r~v~~~~~~~~a~~~~~~~~E~S 150 (169)
T cd04114 103 ---------REIEQ----------YA--------N----NKVITILVGNKIDLAER-REVSQQRAEEFSDAQDMYYLETS 150 (169)
T ss_pred ---------HHHHH----------HC--------C----CCCEEEEECCCCCHHHC-CCCCHHHHHHHHHHCCCEEEEEC
T ss_conf ---------99998----------68--------9----88638973113434541-78899999999998899999986
Q ss_pred CHHHH
Q ss_conf 00246
Q gi|254780226|r 242 AAIEA 246 (367)
Q Consensus 242 a~~E~ 246 (367)
|+.-.
T Consensus 151 Aktg~ 155 (169)
T cd04114 151 AKESD 155 (169)
T ss_pred CCCCC
T ss_conf 89880
No 126
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.20 E-value=3.3e-05 Score=54.90 Aligned_cols=147 Identities=18% Similarity=0.225 Sum_probs=84.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
.||-++|-++||||+|....+.. . =..+|. +| +|......- ..+++ ...+++.|.||--.-
T Consensus 2 ~KvvlvGd~~VGKTsli~r~~~~-~-F~~~y~-~T----i~~~~~k~~-------~i~~~---~~~l~iwDtaG~e~~-- 62 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQN-H-FVDEYD-PT----IEDSYRKQV-------VIDGE---TCLLDILDTAGQEEY-- 62 (162)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CC----CCCEEEEEE-------EECCE---EEEEEEEECCCCCCC--
T ss_conf 39999899998899999999839-2-887568-85----552799999-------99999---999999979986011--
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
+.+-. ..+|+||++|.|-|+..-+. .+. ++.-|+.+
T Consensus 63 --~~l~~---~~~~~a~~~ilvydvt~~~S----------f~~---------------v~~w~~~i-------------- 98 (162)
T cd04138 63 --SAMRD---QYMRTGEGFLCVFAINSRKS----------FED---------------IHTYREQI-------------- 98 (162)
T ss_pred --CHHHH---HHHCCCCEEEEEEECCCHHH----------HHH---------------HHHHHHHH--------------
T ss_conf --14789---87157877999961798899----------998---------------99999999--------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
.. .+. ...-|+++|+||+|... .....++.++++.+.+..++-+||
T Consensus 99 -----------~~------------------~~~---~~~~piilVgNK~Dl~~--r~V~~~e~~~~a~~~~~~f~E~SA 144 (162)
T cd04138 99 -----------KR------------------VKD---SDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYIETSA 144 (162)
T ss_pred -----------HH------------------HCC---CCCCEEEEEEEECCHHH--CCCCHHHHHHHHHHCCCEEEEECC
T ss_conf -----------98------------------548---88854999976535645--558899999999980998999738
Q ss_pred HHHH
Q ss_conf 0246
Q gi|254780226|r 243 AIEA 246 (367)
Q Consensus 243 ~~E~ 246 (367)
+...
T Consensus 145 k~~~ 148 (162)
T cd04138 145 KTRQ 148 (162)
T ss_pred CCCC
T ss_conf 9985
No 127
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.17 E-value=8.9e-05 Score=51.99 Aligned_cols=150 Identities=21% Similarity=0.201 Sum_probs=85.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|-++||||+|+...+.. . =..+|. .|+..+...-.+ ..++. ...+++.|.||--.
T Consensus 1 ~KivvvGd~~VGKTsli~r~~~~-~-f~~~~~-~Tig~~~~~k~i----------~~~~~---~~~l~iwDtaG~e~--- 61 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTED-E-FSESTK-STIGVDFKIKTV----------YIENK---IIKLQIWDTNGQER--- 61 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCEEEEEEEE----------EECCE---EEEEEEEECCCCHH---
T ss_conf 97999999997899999999519-6-899868-865403579999----------99999---99999998999710---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
-+.+- -..+|+||++|.|-|...-+. ++. +. .|-.
T Consensus 62 -~~~l~---~~~~~~a~~~ilvydit~~~S-------------f~~------------l~-~w~~--------------- 96 (188)
T cd04125 62 -FRSLN---NSYYRGAHGYLLVYDVTDQES-------------FEN------------LK-FWIN--------------- 96 (188)
T ss_pred -HHHHH---HHHHCCCCEEEEEECCCCHHH-------------HHH------------HH-HHHH---------------
T ss_conf -45789---998637867999803898789-------------999------------99-9999---------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
.+.. . . -...|+++|+||.|.... .....+..++++.+.+..++-+||
T Consensus 97 ---------~i~~------~------------~----~~~~~iilvgNK~DL~~~-r~V~~~e~~~~a~~~~~~~~E~SA 144 (188)
T cd04125 97 ---------EINR------Y------------A----RENVIKVIVANKSDLVNN-KVVDSNIAKSFCDSLNIPFFETSA 144 (188)
T ss_pred ---------HHHH------H------------C----CCCCCEEEECCHHHHHHC-CCCCHHHHHHHHHHCCCEEEEECC
T ss_conf ---------9998------7------------8----986624510013447660-679999999999986998999747
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
+....+
T Consensus 145 ktg~nV 150 (188)
T cd04125 145 KQSINV 150 (188)
T ss_pred CCCCCH
T ss_conf 889098
No 128
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.17 E-value=7e-05 Score=52.67 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=85.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE--EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 24867528887888999987404898736668674488337--9976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG--EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g--~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
+||-++|-++||||+|.+........-..+|. .|+..+.- .+.++ ++ + ..++++.|.||--
T Consensus 1 iKivllGd~gVGKTsli~r~~~~~~~f~~~y~-~Tig~~~~~k~~~~~-----------~~-~--~i~l~iwDtaG~e-- 63 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYL-MTTGCDFVVKEVPVD-----------TD-N--TVELFIFDSAGQE-- 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCC-CCCCEEEEEEEEEEC-----------CC-C--EEEEEEEECCCCC--
T ss_conf 99999995995889999999978886688888-864578899999978-----------99-7--9999999799984--
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV 160 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~ 160 (367)
+-+.+ .-..+|+||++|.|-|...-+. + +.+ +.|
T Consensus 64 --~~~~l---~~~~~~~a~~~ilvydit~~~S-------------f------------~~~-~~w--------------- 97 (164)
T cd04101 64 --LYSDM---VSNYWESPSVFILVYDVSNKAS-------------F------------ENC-SRW--------------- 97 (164)
T ss_pred --CHHHH---HHHHHHHCCEEEEEEECCCHHH-------------H------------HHH-HHH---------------
T ss_conf --00678---9999764268999970774668-------------9------------999-999---------------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 78999998899887587410344313267776210235764101001003430111010134678778864369840332
Q gi|254780226|r 161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIII 240 (367)
Q Consensus 161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~i 240 (367)
+++ ++ .. -...|+++|+||.|.... .....++.++++...+..++-+
T Consensus 98 ------------~~~---i~---------------~~--~~~~p~ilVgNK~DL~~~-r~V~~~e~~~~a~~~~~~~~E~ 144 (164)
T cd04101 98 ------------VNK---VR---------------TA--SKHMPGVLVGNKMDLADK-AEVTDAQAQAFAQANQLKFFKT 144 (164)
T ss_pred ------------HHH---HH---------------HH--CCCCCEEEEEECCCCCCC-CCCCHHHHHHHHHHCCCEEEEE
T ss_conf ------------999---99---------------76--689868999872244524-5569999999999889989998
Q ss_pred CCHHHH
Q ss_conf 100246
Q gi|254780226|r 241 SAAIEA 246 (367)
Q Consensus 241 sa~~E~ 246 (367)
||+...
T Consensus 145 SAk~g~ 150 (164)
T cd04101 145 SALRGV 150 (164)
T ss_pred CCCCCC
T ss_conf 668890
No 129
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.17 E-value=4.5e-05 Score=53.98 Aligned_cols=157 Identities=17% Similarity=0.275 Sum_probs=83.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|-++||||+|.+..+.. . =..+|. +||..+.-.-.+ ..+++ +..+++.|+||.-.-.+
T Consensus 1 iKivvlG~~gVGKTsli~rf~~~-~-F~~~y~-pTig~~~~~k~v----------~~dg~---~~~l~IwDtag~~~~~~ 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQ-E-FPEEYI-PTEHRRLYRPAV----------VLSGR---VYDLHILDVPNMQRYPG 64 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCEEEEEEEE----------EECCE---EEEEEEEECCCCCCCCC
T ss_conf 98999997998999999999719-8-888747-846616789999----------99999---99999995877304555
Q ss_pred CCCCCHHHHHH----HHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 24663289999----87303747885012345421134577673215788988887643322245777778752032046
Q gi|254780226|r 83 KGEGLGNQFLA----HIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEE 158 (367)
Q Consensus 83 ~G~GlGN~FL~----~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~ 158 (367)
- -|.+|.+ -+|+||++|.|-|....+. .++++.+..++ .+
T Consensus 65 t---agqe~~~~r~~~ir~a~~~ilVydvt~~~S----------F~~v~~~~~~i-------~~---------------- 108 (198)
T cd04142 65 T---AGQEWMDPRFRGLRNSRAFILVYDICSPDS----------FHYVKLLRQQI-------LE---------------- 108 (198)
T ss_pred C---CCHHHHHHHHHHCCCCCEEEEEEECCCHHH----------HHHHHHHHHHH-------HH----------------
T ss_conf 6---521235556440146888999998867788----------89999999999-------99----------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHH-CCCCC
Q ss_conf 77789999988998875874103443132677762102357641010010034301110101346787788643-69840
Q gi|254780226|r 159 IVLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQ-QNAEM 237 (367)
Q Consensus 159 ~~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~-~~~~~ 237 (367)
.+. ... ..-|+++|+||.|....+- ...++...++.+ .+..+
T Consensus 109 --------------------~~~----~~~------------~~~piiLVGNK~DL~~~R~-v~~~~~~~~a~~~~~~~f 151 (198)
T cd04142 109 --------------------TRP----AGN------------KEPPIVVVGNKRDQQRHRF-APRHVLSVLVRKSWKCGY 151 (198)
T ss_pred --------------------HHH----CCC------------CCCCEEEEEECCCCCCCCC-CCHHHHHHHHHHCCCCEE
T ss_conf --------------------851----479------------9982899834543100356-889999999985199769
Q ss_pred CCCCCHHHHHH
Q ss_conf 33210024665
Q gi|254780226|r 238 IIISAAIEAEI 248 (367)
Q Consensus 238 i~isa~~E~ei 248 (367)
+-+||+....+
T Consensus 152 ~EtSAK~~~nV 162 (198)
T cd04142 152 LECSAKYNWHI 162 (198)
T ss_pred EECCCCCCCCH
T ss_conf 98878899698
No 130
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.16 E-value=7e-05 Score=52.66 Aligned_cols=146 Identities=19% Similarity=0.190 Sum_probs=84.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|-++||||+|....+.. . =..+|. +|+..+...-.+ ..+++ ..++++.|.||- .
T Consensus 1 iKivllGd~~VGKTsli~r~~~~-~-f~~~~~-~Tig~~~~~~~~----------~~~~~---~~~l~iwDtaG~----e 60 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMD-G-YEPQQL-STYALTLYKHNA----------KFEGK---TILVDFWDTAGQ----E 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCEEEEEEEE----------EECCE---EEEEEEEECCCC----C
T ss_conf 98999998996789999999809-7-799726-654157999999----------99999---999999979998----4
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
+=+.+... -.|+|+++|.|-|....+. + +.++ .|-
T Consensus 61 ~f~~~~~~---y~~~a~~~ilvfDit~~~S-------------f------------~~~~-~w~---------------- 95 (161)
T cd04124 61 RFQTMHAS---YYHKAHACILVFDVTRKIT-------------Y------------KNLS-KWY---------------- 95 (161)
T ss_pred CCCHHHHH---HHCCCCEEEEEEECCCHHH-------------H------------HHHH-HHH----------------
T ss_conf 34324699---7356876799996897788-------------9------------9999-999----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
..+.+ . . ..-|+++|+||+|.+.. . .++..+++.+.+..++.+||
T Consensus 96 --------~~i~~------~----~-------------~~~p~ilVgNK~DL~~~---~-~~~~~~~a~~~~~~f~etSA 140 (161)
T cd04124 96 --------EELRE------Y----R-------------PEIPCIVVANKIDLDPS---V-TQKKFNFAEKHNLPLYYVSA 140 (161)
T ss_pred --------HHHHH------H----C-------------CCCCEEEEEECCCCCCH---H-HHHHHHHHHHCCCEEEEEEC
T ss_conf --------99998------6----8-------------69989999997117742---5-89999999986991999907
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
+...-+
T Consensus 141 k~g~nV 146 (161)
T cd04124 141 ADGTNV 146 (161)
T ss_pred CCCCCH
T ss_conf 838097
No 131
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.15 E-value=0.00024 Score=49.06 Aligned_cols=157 Identities=16% Similarity=0.225 Sum_probs=88.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC-EEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 248675288878889999874048987366686744883-3799768555877764218650233579998512235432
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPN-SGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn-~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.||-++|-++||||++.+..+... =..+|. .||+-. .-.+.+ +++ ..++++.|.||-
T Consensus 1 yKIvvlGdsgVGKTSLi~Rf~~~~--F~~~y~-pTi~d~~~k~i~i------------~g~---~v~L~IwDTaGq---- 58 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGR--FEEQYT-PTIEDFHRKLYSI------------RGE---VYQLDILDTSGN---- 58 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCCCCC-CCHHHEEEEEEEE------------CCE---EEEEEEEECCCC----
T ss_conf 979999989978999999996496--899878-8835318899999------------999---999999967665----
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
.+-..+-..+ ++++|++|.|-|...-+ + .+++ ..|.-++.+-+|..
T Consensus 59 e~f~sl~~~y---~~~a~~~IlVYDITnr~-------S---Fe~v-------~~w~~~I~e~k~~~-------------- 104 (247)
T cd04143 59 HPFPAMRRLS---ILTGDVFILVFSLDNRE-------S---FEEV-------CRLREQILETKSCL-------------- 104 (247)
T ss_pred CCCCCCHHHH---HHCCCEEEEEEECCCHH-------H---HHHH-------HHHHHHHHHHHCCC--------------
T ss_conf 3687442013---12177899999799878-------9---9989-------99999999864001--------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHH-HHHCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788-64369840332
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRL-ASQQNAEMIII 240 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l-~~~~~~~~i~i 240 (367)
.. + .. + ...-|+++|.||.|.+..+ ....++.+++ +...+..++-+
T Consensus 105 ------------~~----~------~~-------~---~~~vpiiLVGNK~DL~~~R-~Vs~eEa~~~~A~~~~~~f~Et 151 (247)
T cd04143 105 ------------KN----K------TK-------E---NVKIPMVICGNKADRDFPR-EVQRDEVEQLVGGDENCAYFEV 151 (247)
T ss_pred ------------CC----C------CC-------C---CCCCCEEEEEECCCCHHCC-CCCHHHHHHHHHHHCCCEEEEC
T ss_conf ------------00----1------35-------7---8887589986655432017-8799999999997689879988
Q ss_pred CCHHHHHH
Q ss_conf 10024665
Q gi|254780226|r 241 SAAIEAEI 248 (367)
Q Consensus 241 sa~~E~ei 248 (367)
||+....+
T Consensus 152 SAKt~~NV 159 (247)
T cd04143 152 SAKKNSNL 159 (247)
T ss_pred CCCCCCCH
T ss_conf 78999498
No 132
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.15 E-value=7.2e-05 Score=52.58 Aligned_cols=149 Identities=23% Similarity=0.255 Sum_probs=84.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||-++|-++||||+|++..+.. . =..+|+ +||......-.+ -.+++ ..++++.|+||--.
T Consensus 3 ~~Kiv~iGd~~VGKTsli~r~~~~-~-f~~~~~-~Tig~~~~~k~i----------~~~~~---~~~l~iwDtaG~e~-- 64 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRN-E-FNLDSK-STIGVEFATRSI----------QIDGK---TIKAQIWDTAGQER-- 64 (165)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCEEEEEEEE----------EECCE---EEEEEEEECCCCHH--
T ss_conf 589999999997899999999729-8-999889-874478789999----------99999---99999998999721--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
=+.+-+ ...|+||++|.|.|...-.. + +.++ .|
T Consensus 65 --~~~~~~---~~~~~a~~~ilvydit~~~S-------------f------------~~i~-~w---------------- 97 (165)
T cd01868 65 --YRAITS---AYYRGAVGALLVYDITKKQT-------------F------------ENVE-RW---------------- 97 (165)
T ss_pred --HHHHHH---HHHHHCCCEEEEEECCCHHH-------------H------------HHHH-HH----------------
T ss_conf --267899---87332051489862698899-------------9------------9999-99----------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
+++ ++.. . . ...|+++|+||.|.... .....+...+++.+.+..++.+|
T Consensus 98 -----------~~~---i~~~----~--------~----~~~~iilVgnK~DL~~~-r~Vs~~e~~~~a~~~~~~~~E~S 146 (165)
T cd01868 98 -----------LKE---LRDH----A--------D----SNIVIMLVGNKSDLRHL-RAVPTEEAKAFAEKNGLSFIETS 146 (165)
T ss_pred -----------HHH---HHHH----C--------C----CCCEEEEECCCCCHHHH-CCCCHHHHHHHHHHCCCEEEEEC
T ss_conf -----------999---9985----5--------5----77359870234786885-78889999999998599799967
Q ss_pred CHHHH
Q ss_conf 00246
Q gi|254780226|r 242 AAIEA 246 (367)
Q Consensus 242 a~~E~ 246 (367)
|+...
T Consensus 147 Ak~g~ 151 (165)
T cd01868 147 ALDGT 151 (165)
T ss_pred CCCCC
T ss_conf 88892
No 133
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.14 E-value=5e-05 Score=53.65 Aligned_cols=148 Identities=22% Similarity=0.279 Sum_probs=84.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||-++|-+.||||+|+...+... =..+| .|.+|..+... -..+++ ...+++.|.||--.-
T Consensus 1 KivviGd~gVGKTsli~r~~~~~--F~~~y-----~pTi~~~~~k~-------~~~~~~---~~~l~iwDtaG~e~~--- 60 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVETY-----DPTIEDSYRKQ-------VVVDGQ---PCMLEVLDTAGQEEY--- 60 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHHCC--CCCCC-----CCCCCEEEEEE-------EEECCE---EEEEEEEECCCCCCH---
T ss_conf 98999989987899999996297--99886-----99724788999-------999999---999999989997311---
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577-77787520320467778
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLF-EKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~-~k~~k~~~~~~~~~~~~ 162 (367)
..+- -..+|+||++|.|-|...-.. .+. ++ .| +.+.+.
T Consensus 61 -~~l~---~~~~r~a~~~ilVydvtd~~S----------F~~---------------l~-~w~~~i~~~----------- 99 (190)
T cd04144 61 -TALR---DQWIREGEGFILVYSITSRST----------FER---------------VE-RFREQIQRV----------- 99 (190)
T ss_pred -HHHH---HHHHCCCCEEEEEEECCCHHH----------HHH---------------HH-HHHHHHHHH-----------
T ss_conf -6788---998236765899972797789----------999---------------99-999999998-----------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
+. .. ...-|+++|+||.|.... .....++..+++.+.+..++-+||
T Consensus 100 -----------------~~---~~-------------~~~~piiLVGNK~Dl~~~-r~V~~~e~~~~a~~~~~~~~E~SA 145 (190)
T cd04144 100 -----------------KD---ES-------------AADVPIMIVGNKCDKVYE-REVSTEEGAALARRLGCEFIEASA 145 (190)
T ss_pred -----------------HH---CC-------------CCCCEEEECCCCCCHHHC-CCCCHHHHHHHHHHCCCEEEEECC
T ss_conf -----------------53---37-------------999528951455350330-578999999999980998999735
Q ss_pred HHHH
Q ss_conf 0246
Q gi|254780226|r 243 AIEA 246 (367)
Q Consensus 243 ~~E~ 246 (367)
+...
T Consensus 146 k~~~ 149 (190)
T cd04144 146 KTNV 149 (190)
T ss_pred CCCC
T ss_conf 8880
No 134
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.14 E-value=0.00012 Score=51.15 Aligned_cols=148 Identities=18% Similarity=0.220 Sum_probs=83.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||=++|-++||||+|++..+... -..+| .|.+|.-...- ... .+++ ..++++.|.||- .
T Consensus 1 ~Kivl~Gd~~vGKTsli~r~~~~~--f~~~~-----~~Tig~~~~~k-----~~~-~~~~---~~~l~iwDtaG~----e 60 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENK--FKEDS-----QHTIGVEFGSK-----IIR-VGGK---RVKLQIWDTAGQ----E 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC--CCCCC-----CCCCCEEEEEE-----EEE-ECCE---EEEEEEEECCCC----H
T ss_conf 989999949967999999997298--99987-----99764578999-----999-9999---999999989997----0
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
+-+.+ --..+|+||++|.|.|...-+. ++- +. .|
T Consensus 61 ~~~~~---~~~~~~~a~~~ilvydit~~~S-------------f~~----~~---------~w----------------- 94 (161)
T cd04113 61 RFRSV---TRSYYRGAAGALLVYDITNRTS-------------FEA----LP---------TW----------------- 94 (161)
T ss_pred HHHHH---HHHHHHCCCEEEEECCCCCHHH-------------HHH----HH---------HH-----------------
T ss_conf 12267---8998405777899536898899-------------999----99---------99-----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
+++ ++.. .+ ..-|+++|+||+|..... ....++.++++.+.+..++.+||
T Consensus 95 ----------~~~---i~~~------------~~----~~~~iilVgNK~Dl~~~r-~V~~~e~~~~a~~~~~~~~E~SA 144 (161)
T cd04113 95 ----------LSD---ARAL------------AS----PNIVVILVGNKSDLADQR-EVTFLEASRFAQENGLLFLETSA 144 (161)
T ss_pred ----------HHH---HHHH------------CC----CCCEEEEECCCCCCHHCC-CCCHHHHHHHHHHCCCEEEEECC
T ss_conf ----------999---9986------------79----996498603434400037-88999999999985997999741
Q ss_pred HHHH
Q ss_conf 0246
Q gi|254780226|r 243 AIEA 246 (367)
Q Consensus 243 ~~E~ 246 (367)
+...
T Consensus 145 k~~~ 148 (161)
T cd04113 145 LTGE 148 (161)
T ss_pred CCCC
T ss_conf 5690
No 135
>KOG0073 consensus
Probab=98.12 E-value=3e-05 Score=55.13 Aligned_cols=140 Identities=19% Similarity=0.228 Sum_probs=86.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE----EECCCHHHHHHHHHCCCCEEEEEEEEEEECCC
Q ss_conf 98248675288878889999874048987366686744883379----97685558777642186502335799985122
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE----VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAG 76 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~----~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaG 76 (367)
|-|+|=|+|+-|+||||+.+.+-+ .+ --||+|..|. +..++ .++++.||.|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~-~~-------~~~i~pt~gf~Iktl~~~~-----------------~~L~iwDvGG 69 (185)
T KOG0073 15 REVRILILGLDNSGKTTIVKKLLG-ED-------TDTISPTLGFQIKTLEYKG-----------------YTLNIWDVGG 69 (185)
T ss_pred HEEEEEEEECCCCCCHHHHHHHCC-CC-------CCCCCCCCCEEEEEEEECC-----------------EEEEEEECCC
T ss_conf 344799991278982448988538-98-------2232872113557877424-----------------2899997488
Q ss_pred CCCCCCCCCCCHHHHHHH-HHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 354322246632899998-7303747885012345421134577673215788988887643322245777778752032
Q gi|254780226|r 77 LVRGASKGEGLGNQFLAH-IREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHK 155 (367)
Q Consensus 77 Lv~gA~~G~GlGN~FL~~-ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~ 155 (367)
=... ..|..+ -.++||+|.|||.++ |. +++
T Consensus 70 q~~l--------r~~W~nYfestdglIwvvDssD------------~~--------------------r~~--------- 100 (185)
T KOG0073 70 QKTL--------RSYWKNYFESTDGLIWVVDSSD------------RM--------------------RMQ--------- 100 (185)
T ss_pred CCHH--------HHHHHHHHHCCCEEEEEEECCH------------HH--------------------HHH---------
T ss_conf 5336--------8788776650472899997720------------88--------------------899---------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCC-CHH--HHHHHHHHHHH
Q ss_conf 046777899999889988758741034431326777621023576410100100343011101-013--46787788643
Q gi|254780226|r 156 SEEIVLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKK-GNI--YTEAVQRLASQ 232 (367)
Q Consensus 156 ~~~~~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~-~n~--~~e~i~~l~~~ 232 (367)
+....+.+.|. .-++. -+|++++|||.|.+.+- .+. +.-.+.+++++
T Consensus 101 --------e~~~~L~~lL~---------------------eerla-G~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks 150 (185)
T KOG0073 101 --------ECKQELTELLV---------------------EERLA-GAPLLVLANKQDLPGALSLEEISKALDLEELAKS 150 (185)
T ss_pred --------HHHHHHHHHHH---------------------HHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHCHHHHCCC
T ss_conf --------99999999975---------------------65434-8843999734768552478788876477876133
Q ss_pred CCCCCCCCCCHH
Q ss_conf 698403321002
Q gi|254780226|r 233 QNAEMIIISAAI 244 (367)
Q Consensus 233 ~~~~~i~isa~~ 244 (367)
....++-+||-.
T Consensus 151 ~~~~l~~cs~~t 162 (185)
T KOG0073 151 HHWRLVKCSAVT 162 (185)
T ss_pred CCCEEEEEECCC
T ss_conf 672289985454
No 136
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.12 E-value=0.00015 Score=50.49 Aligned_cols=151 Identities=21% Similarity=0.226 Sum_probs=87.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||-++|-++||||+|....+.. . =..+|. +||..+...-.+. .+++ ..++++.|.||--
T Consensus 2 ~~Kiv~vGd~~vGKTsli~r~~~~-~-f~~~y~-~Tig~~~~~~~i~----------~~~~---~~~l~iwDtaG~e--- 62 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADD-T-YTESYI-STIGVDFKIRTIE----------LDGK---TIKLQIWDTAGQE--- 62 (166)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC-C-CCCCCC-CCCCEEEEEEEEE----------ECCE---EEEEEEEECCCCC---
T ss_conf 699999999997899999999439-9-998747-8544048999999----------9999---9999999899982---
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
+-+.+-.. ..|+||++|.|.|....+. .+. +. .|
T Consensus 63 -~~~~~~~~---~~~~a~~~ilvfdit~~~S----------f~~---------------i~-~w---------------- 96 (166)
T cd01869 63 -RFRTITSS---YYRGAHGIIIVYDVTDQES----------FNN---------------VK-QW---------------- 96 (166)
T ss_pred -CCCCCHHH---HHHHCCEEEEEECCCCHHH----------HHH---------------HH-HH----------------
T ss_conf -34626788---8563267799711799899----------999---------------99-99----------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
...+.. . . -..-|+++++||.|.... .....+...+++.+.+..++.+|
T Consensus 97 --------~~~i~~------~------------~----~~~~~~ilvgNK~DL~~~-r~v~~~~~~~~a~~~~~~~~E~S 145 (166)
T cd01869 97 --------LQEIDR------Y------------A----SENVNKLLVGNKCDLTDK-RVVDYSEAQEFADELGIPFLETS 145 (166)
T ss_pred --------HHHHHH------H------------C----CCCCCEEEEEEEECCCCC-CCCCHHHHHHHHHHCCCEEEEEC
T ss_conf --------999998------6------------7----877744886132011314-66799999999998399699987
Q ss_pred CHHHHHH
Q ss_conf 0024665
Q gi|254780226|r 242 AAIEAEI 248 (367)
Q Consensus 242 a~~E~ei 248 (367)
|+...-+
T Consensus 146 Ak~g~nI 152 (166)
T cd01869 146 AKNATNV 152 (166)
T ss_pred CCCCCCH
T ss_conf 6878068
No 137
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.12 E-value=7.1e-05 Score=52.65 Aligned_cols=160 Identities=14% Similarity=0.138 Sum_probs=85.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||-++|-++||||+|....+... - ..+|- +|+......-.+.-.....-....++ .-+++++.|+||-=
T Consensus 4 ~~KivvvGd~~VGKTsli~r~~~~~-f-~~~y~-~Tig~~~~~k~i~~~~~~~~~~~~~~---~~v~l~iwDtaGqe--- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK-F-NPKFI-TTVGIDFREKRVVYNSSGPGGTLGRG---QRIHLQLWDTAGQE--- 74 (180)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC-C-CCCCC-CCCCEEEEEEEEEECCCCCCCCCCCC---CEEEEEEEECCCCH---
T ss_conf 8899999999988899999996195-8-99868-84322688999998476554445788---58999999898863---
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
+-+.+- -..+|+|+++|.|-|....+. .+. +. .|-
T Consensus 75 -~~~~l~---~~~~~~a~~~ilvydit~~~S----------f~~---------------l~-~w~--------------- 109 (180)
T cd04127 75 -RFRSLT---TAFFRDAMGFLLIFDLTNEQS----------FLN---------------VR-NWM--------------- 109 (180)
T ss_pred -HHHHHH---HHHHHHHCEEEEEEECCCHHH----------HHH---------------HH-HHH---------------
T ss_conf -047888---999875436589996898899----------998---------------99-999---------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
..+.. ......-|+++|+||+|.... .....+..++++.+.+..++-+|
T Consensus 110 ---------~~i~~---------------------~~~~~~~~iilVGNK~DL~~~-r~V~~~e~~~~a~~~~~~~~E~S 158 (180)
T cd04127 110 ---------SQLQT---------------------HAYCENPDIVLCGNKADLEDQ-RQVSEEQAKALADKYGIPYFETS 158 (180)
T ss_pred ---------HHHHH---------------------HCCCCCCCEEEECCCCCHHHC-CCCCHHHHHHHHHHCCCEEEEEC
T ss_conf ---------99998---------------------546689857875032366750-88899999999998499799980
Q ss_pred CHHHH
Q ss_conf 00246
Q gi|254780226|r 242 AAIEA 246 (367)
Q Consensus 242 a~~E~ 246 (367)
|+.-.
T Consensus 159 Ak~g~ 163 (180)
T cd04127 159 AATGT 163 (180)
T ss_pred CCCCC
T ss_conf 37791
No 138
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.11 E-value=0.00016 Score=50.31 Aligned_cols=151 Identities=21% Similarity=0.226 Sum_probs=85.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||-++|-++||||+|.+...... =..+|. +||..+.-.-.+. .++. ..++++.|.||-=.
T Consensus 3 ~~KivlvGd~~vGKTsli~r~~~~~--f~~~~~-~Tig~~~~~k~v~----------~~~~---~i~l~iwDt~G~e~-- 64 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS--FNPSFI-STIGIDFKIRTIE----------LDGK---KIKLQIWDTAGQER-- 64 (167)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CCCCEEEEEEEEE----------ECCE---EEEEEEEECCCCCC--
T ss_conf 8999999999978899999996099--999868-9864688999999----------9999---99999998999700--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
=+.+ --..+|+||++|.|.|...-.. ++- ++ .|-+
T Consensus 65 --~~~~---~~~y~~~a~~~ilvfdit~~~S-------------f~~------------~~-~w~~-------------- 99 (167)
T cd01867 65 --FRTI---TTAYYRGAMGIILVYDITDEKS-------------FEN------------IR-NWMR-------------- 99 (167)
T ss_pred --HHHH---HHHHHHHCCEEEEECCCCCHHH-------------HHH------------HH-HHHH--------------
T ss_conf --1166---7998565058899556898799-------------999------------99-9999--------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
. +.+ . -+ ..-|+++|+||.|.... .....+...+++.+.+..++.+|
T Consensus 100 ------~----i~~------~---~~-------------~~~~~ilVgNK~Dl~~~-r~v~~~e~~~~a~~~~~~~~e~S 146 (167)
T cd01867 100 ------N----IEE------H---AS-------------EDVERMLVGNKCDMEEK-RVVSKEEGEALADEYGIKFLETS 146 (167)
T ss_pred ------H----HHH------H---CC-------------CCCCEEEECCCCCCHHC-CCCCHHHHHHHHHHHCCEEEEEC
T ss_conf ------9----998------6---69-------------99705764212450230-77999999999998099699982
Q ss_pred CHHHHHH
Q ss_conf 0024665
Q gi|254780226|r 242 AAIEAEI 248 (367)
Q Consensus 242 a~~E~ei 248 (367)
|+...-+
T Consensus 147 Aktg~nI 153 (167)
T cd01867 147 AKANINV 153 (167)
T ss_pred CCCCCCH
T ss_conf 2579078
No 139
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.11 E-value=7.5e-05 Score=52.48 Aligned_cols=149 Identities=19% Similarity=0.273 Sum_probs=84.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337-99768555877764218650233579998512235432
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.||-++|-++||||+|....+.. . =..+|. +||+...- .+.+ ++ + ..++++.|.||--
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~-~-F~~~y~-~Ti~~~~~~~i~~------------~~-~--~~~l~iwDtaG~e--- 60 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKG-T-FRESYI-PTIEDTYRQVISC------------SK-N--ICTLQITDTTGSH--- 60 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCCEEEEEEEE------------CC-E--EEEEEEEECCCCC---
T ss_conf 09999899997699999999649-6-999868-8454205589999------------99-9--9999999899984---
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
+-+.+-.. .+|+||++|.|-|...-+. . +.++.-|+.+.+
T Consensus 61 -~~~~l~~~---~~~~a~~~ilvydit~~~S----------f---------------~~~~~~~~~i~~----------- 100 (165)
T cd04140 61 -QFPAMQRL---SISKGHAFILVYSVTSKQS----------L---------------EELKPIYELICE----------- 100 (165)
T ss_pred -CCCCCHHH---HHCCCCEEEEEECCCCHHH----------H---------------HHHHHHHHHHHH-----------
T ss_conf -65423244---5068857999813898789----------9---------------999999999999-----------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
+++.. ...-|+++|+||.|....+ ....++.++++.+.+..++-+|
T Consensus 101 --------------------------------~~~~~-~~~~piilVgNK~Dl~~~r-~V~~~e~~~~a~~~~~~~~E~S 146 (165)
T cd04140 101 --------------------------------IKGNN-IEKIPIMLVGNKCDESHKR-EVSSNEGAACATEWNCAFMETS 146 (165)
T ss_pred --------------------------------HHHCC-CCCCCEEEEEECCCCCCCC-CCCHHHHHHHHHHCCCEEEEEC
T ss_conf --------------------------------96158-8888789986424640027-8899999999998698899974
Q ss_pred CHHHH
Q ss_conf 00246
Q gi|254780226|r 242 AAIEA 246 (367)
Q Consensus 242 a~~E~ 246 (367)
|+.-.
T Consensus 147 Ak~~~ 151 (165)
T cd04140 147 AKTNH 151 (165)
T ss_pred CCCCC
T ss_conf 47794
No 140
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.11 E-value=9.1e-05 Score=51.90 Aligned_cols=150 Identities=18% Similarity=0.244 Sum_probs=87.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||=++|-++||||+|.+..+.. . -..+|. +||......-.+. .++ ...++++.|.||--
T Consensus 1 ~KIvllGd~~VGKTsli~r~~~~-~-f~~~~~-~Tig~~~~~k~v~----------~~~---~~i~l~iwDtaGqe---- 60 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDN-E-FHSSHI-STIGVDFKMKTIE----------VDG---IKVRIQIWDTAGQE---- 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC-C-CCCCCC-CCCEEEEEEEEEE----------ECC---EEEEEEEEECCCCC----
T ss_conf 98999994998589999999429-9-899878-8720898899999----------999---99999999799960----
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
+-+.+-. ...|+||++|.|-|...... + +.+. .|-
T Consensus 61 ~~~~~~~---~y~r~a~~~ilvyDvt~~~S-------------f------------~~l~-~w~---------------- 95 (161)
T cd04117 61 RYQTITK---QYYRRAQGIFLVYDISSERS-------------Y------------QHIM-KWV---------------- 95 (161)
T ss_pred CCCCCHH---HHHHHHCEEEEECCCCCHHH-------------H------------HHHH-HHH----------------
T ss_conf 2363558---88764168899614898899-------------9------------9999-999----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
..+.+ ... ..-|+++|+||.|..... ....++..+++.+.+..++.+||
T Consensus 96 --------~~i~~----------~~~------------~~~~~ilVgNK~Dl~~~r-~v~~~~~~~~a~~~~~~~~etSA 144 (161)
T cd04117 96 --------SDVDE----------YAP------------EGVQKILIGNKADEEQKR-QVGDEQGNKLAKEYGMDFFETSA 144 (161)
T ss_pred --------HHHHH----------HCC------------CCCEEEEEEECCCHHHCC-CCCHHHHHHHHHHCCCEEEEECC
T ss_conf --------99998----------789------------986499987327878627-79999999999986997999677
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
+....+
T Consensus 145 k~~~nV 150 (161)
T cd04117 145 CTNSNI 150 (161)
T ss_pred CCCCCH
T ss_conf 898298
No 141
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.10 E-value=5.5e-05 Score=53.38 Aligned_cols=148 Identities=19% Similarity=0.242 Sum_probs=83.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|-|+||||+|.+..+.. . =..+|. +|+ +...... . ..+++ ...+++.|.||--.
T Consensus 1 fKiv~vGd~~vGKTsli~r~~~~-~-f~~~y~-~Ti----~~~~~k~------i-~~~~~---~~~l~iwDt~G~e~--- 60 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQG-H-FVDDYD-PTI----EDSYRKQ------I-EIDGE---VCLLDILDTAGQEE--- 60 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCE----EEEEEEE------E-EECCE---EEEEEEEECCCCCC---
T ss_conf 98999999997899999999729-7-998778-813----6789999------9-99999---99999998999710---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
=+.+-+ ..+|+||++|.|-|...-.. ++ .+. .|
T Consensus 61 -~~~~~~---~~~~~a~~~ilvydi~~~~S-------------f~------------~~~-~~----------------- 93 (164)
T smart00173 61 -FSAMRD---QYMRTGEGFLLVYSITDRQS-------------FE------------EIK-KF----------------- 93 (164)
T ss_pred -HHHHHH---HHCCCCCEEEEEEECCCHHH-------------HH------------HHH-HH-----------------
T ss_conf -356777---75379877999830798899-------------99------------999-99-----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
|. +... ... ...-|+++|+||.|.... .....++..+++.+.+..++-+||
T Consensus 94 -----------------------~~-~i~~-~~~---~~~~piilvgnK~DL~~~-r~V~~~e~~~~a~~~~~~~~E~SA 144 (164)
T smart00173 94 -----------------------RE-QILR-VKD---RDDVPIVLVGNKCDLESE-RVVSTEEGKELARQWGCPFLETSA 144 (164)
T ss_pred -----------------------HH-HHHH-HCC---CCCCCEEEEEECCCCHHC-CCCCHHHHHHHHHHCCCEEEEECC
T ss_conf -----------------------99-9998-618---888866877753463011-789999999999983998999858
Q ss_pred HHHH
Q ss_conf 0246
Q gi|254780226|r 243 AIEA 246 (367)
Q Consensus 243 ~~E~ 246 (367)
+...
T Consensus 145 k~g~ 148 (164)
T smart00173 145 KERV 148 (164)
T ss_pred CCCC
T ss_conf 9881
No 142
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.09 E-value=0.00012 Score=51.03 Aligned_cols=151 Identities=20% Similarity=0.227 Sum_probs=86.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||-++|-++||||+|.+..+.. .- ..+|+ +||......-.+ ..++ ...++++.|.||--.-
T Consensus 4 ~~KivlvGd~~VGKTsli~r~~~~-~f-~~~~~-~Tig~~~~~k~i----------~~~~---~~~~l~iwDt~G~e~~- 66 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDK-RF-QPVHD-LTIGVEFGARMI----------TIDG---KQIKLQIWDTAGQESF- 66 (168)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC-CC-CCCCC-CCCEEEEEEEEE----------EECC---EEEEEEEEECCCCCCC-
T ss_conf 889999998997889999999109-89-99878-985078899999----------9999---9999999979997334-
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
+.+ .-...|++|++|.|-|...-+. + +.+. .|
T Consensus 67 ---~~l---~~~~~~~a~~~ilvydit~~~S-------------f------------~~l~-~w---------------- 98 (168)
T cd01866 67 ---RSI---TRSYYRGAAGALLVYDITRRET-------------F------------NHLT-SW---------------- 98 (168)
T ss_pred ---CCC---HHHHHHHHCEEEEECCCCCHHH-------------H------------HHHH-HH----------------
T ss_conf ---625---5888664368999344587799-------------9------------9999-99----------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
+++ ++.. . . ..-|+++|+||+|.... .....+..++++.+.+..++-+|
T Consensus 99 -----------~~~---i~~~----~--------~----~~~~iiLVGNK~DL~~~-r~V~~~e~~~~a~~~~~~~~E~S 147 (168)
T cd01866 99 -----------LED---ARQH----S--------N----SNMTIMLIGNKCDLESR-REVSYEEGEAFAKEHGLIFMETS 147 (168)
T ss_pred -----------HHH---HHHH----C--------C----CCCEEEEEEECCCHHHC-CCCCHHHHHHHHHHCCCEEEEEC
T ss_conf -----------999---9986----7--------9----99659984342354540-77899999999998699999976
Q ss_pred CHHHHHH
Q ss_conf 0024665
Q gi|254780226|r 242 AAIEAEI 248 (367)
Q Consensus 242 a~~E~ei 248 (367)
|+....+
T Consensus 148 Ak~~~nV 154 (168)
T cd01866 148 AKTASNV 154 (168)
T ss_pred CCCCCCH
T ss_conf 7888088
No 143
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.07 E-value=0.00015 Score=50.43 Aligned_cols=148 Identities=21% Similarity=0.248 Sum_probs=87.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE--EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCC
Q ss_conf 824867528887888999987404898736668674488337--997685558777642186502335799985122354
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG--EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVR 79 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g--~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~ 79 (367)
.+||-++|-++||||+|+...+.. . =..+|. +||..+.. .+.+ +++ ..++++.|.||--
T Consensus 6 ~~KIvlvGd~~VGKTSli~r~~~~-~-F~~~~~-~Tig~d~~~k~v~i------------~~~---~v~l~iwDtaGqe- 66 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADN-T-FSGSYI-TTIGVDFKIRTVEI------------NGE---RVKLQIWDTAGQE- 66 (199)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC-C-CCCCCC-CCCCEEEEEEEEEE------------CCE---EEEEEEEECCCCC-
T ss_conf 779999997998889999999509-9-999868-97555878999999------------999---9999999899981-
Q ss_pred CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 32224663289999873037478850123454211345776732157889888876433222457777787520320467
Q gi|254780226|r 80 GASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEI 159 (367)
Q Consensus 80 gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~ 159 (367)
+-+.+...| .|+||++|.|-|...-+. + +.++ .|-
T Consensus 67 ---~~~~l~~~~---~~~a~~~ilvyDit~~~S-------------f------------~~l~-~w~------------- 101 (199)
T cd04110 67 ---RFRTITSTY---YRGTHGVIVVYDVTNGES-------------F------------VNVK-RWL------------- 101 (199)
T ss_pred ---CCCCCHHHH---HHCCCCCEEEEECCCHHH-------------H------------HHHH-HHH-------------
T ss_conf ---235352666---424654238971798899-------------9------------9999-999-------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 77899999889988758741034431326777621023576410100100343011101013467877886436984033
Q gi|254780226|r 160 VLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMII 239 (367)
Q Consensus 160 ~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~ 239 (367)
..+.. . ....|+++|+||.|....+ ....++..+++.+.+..++.
T Consensus 102 -----------~~i~~---------------------~--~~~~~~ilVGNK~Dl~~~r-~v~~~e~~~~a~~~~~~f~E 146 (199)
T cd04110 102 -----------QEIEQ---------------------N--CDDVCKVLVGNKNDDPERK-VVETEDAYKFAGQMGISLFE 146 (199)
T ss_pred -----------HHHHH---------------------H--CCCCCEEEEEECCCHHHHC-CCCHHHHHHHHHHCCCEEEE
T ss_conf -----------99997---------------------5--9987579998855447546-99999999999986997999
Q ss_pred CCCHHHHHH
Q ss_conf 210024665
Q gi|254780226|r 240 ISAAIEAEI 248 (367)
Q Consensus 240 isa~~E~ei 248 (367)
+||+...-+
T Consensus 147 ~SAktg~nV 155 (199)
T cd04110 147 TSAKENINV 155 (199)
T ss_pred EECCCCCCH
T ss_conf 868999298
No 144
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.07 E-value=2.4e-05 Score=55.77 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=51.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||=++|+.|+|||||++.+.. ... ..++ -.|+-.|+-.+... ..++.+.|++| ...
T Consensus 1 kIlilGLd~aGKTTil~~l~~-~~~-~~~~-~PT~Gf~~~~i~~~-----------------~~~l~~wDlgG----q~~ 56 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSS-ERS-LESV-VPTTGFNSVAIPTQ-----------------DAIMELLEIGG----SQN 56 (164)
T ss_pred CEEEECCCCCCHHHHHHHHHC-CCC-CCCC-CCCCCCCEEEEEEC-----------------CEEEEEEECCC----HHH
T ss_conf 999996799989999999816-998-7653-56327746999989-----------------99999985375----288
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-+.+...+ .++||+||.|||+++
T Consensus 57 ~R~~W~~Y---~~~~~gIIfVVDssD 79 (164)
T cd04162 57 LRKYWKRY---LSGSQGLIFVVDSAD 79 (164)
T ss_pred HHHHHHHH---HHCCCEEEEEEECCC
T ss_conf 86569987---117758999995688
No 145
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.07 E-value=0.00014 Score=50.62 Aligned_cols=149 Identities=18% Similarity=0.228 Sum_probs=85.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE--EECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 248675288878889999874048987366686744883379--976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE--VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~--~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
.||-++|-+.||||++.+..+.. .-....|+ +|+....+. +.+. + .++++++.|++|--
T Consensus 1 yKVvllGd~gVGKTSLi~rf~~~-~f~~~~y~-~t~~~d~~~k~v~vd------------~---~~~~l~i~Dt~g~e-- 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSG-EYDDHAYD-ASGDDDTYERTVSVD------------G---EESTLVVIDHWEQE-- 61 (221)
T ss_pred CEEEEECCCCCHHHHHHHHHHHC-CCCCCCCC-CCCCEEEEEEEEEEC------------C---EEEEEEEEECCCCH--
T ss_conf 97999998997099999999819-86986678-744248899999999------------9---99899999898731--
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV 160 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~ 160 (367)
+- .....-..++|++|.|-|...-+ + ++ .++
T Consensus 62 ---~~---~~~~~~~~~ada~ilVYdvtdr~-------S------F~------------~~~------------------ 92 (221)
T cd04148 62 ---MW---TEDSCMQYQGDAFVVVYSVTDRS-------S------FE------------RAS------------------ 92 (221)
T ss_pred ---HH---HHHHHHHHCCCEEEEEEECCCHH-------H------HH------------HHH------------------
T ss_conf ---26---66656530686899999646677-------8------88------------899------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 78999998899887587410344313267776210235764101001003430111010134678778864369840332
Q gi|254780226|r 161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIII 240 (367)
Q Consensus 161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~i 240 (367)
.....+.... . ....|+++|+||+|..-.. ....++-+++|.+.+..++-+
T Consensus 93 -------~~~~~l~~~~------------------~---~~~~piILVGNK~DL~~~R-~Vs~eEg~~~A~~~~~~F~Et 143 (221)
T cd04148 93 -------ELRIQLRRNR------------------Q---LEDRPIILVGNKSDLARSR-EVSVQEGRACAVVFDCKFIET 143 (221)
T ss_pred -------HHHHHHHHHC------------------C---CCCCEEEEEEECCCHHHHC-CCCHHHHHHHHHHCCCEEEEC
T ss_conf -------9999999864------------------8---9995199985356668638-999999999999859989994
Q ss_pred CCHHHHHH
Q ss_conf 10024665
Q gi|254780226|r 241 SAAIEAEI 248 (367)
Q Consensus 241 sa~~E~ei 248 (367)
||+....+
T Consensus 144 SAk~~~NV 151 (221)
T cd04148 144 SAGLQHNV 151 (221)
T ss_pred CCCCCCCH
T ss_conf 57999498
No 146
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.07 E-value=7.2e-05 Score=52.59 Aligned_cols=149 Identities=21% Similarity=0.303 Sum_probs=86.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE--EECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCC
Q ss_conf 8248675288878889999874048987366686744883379--97685558777642186502335799985122354
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE--VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVR 79 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~--~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~ 79 (367)
.+||-++|-++||||+|++..+.. .=..+|| .||...... +.+ +++ ..++++.|.||-=
T Consensus 2 ~~KivlvGd~~VGKTsli~r~~~~--~f~~~~~-~Tig~~~~~k~i~~------------~~~---~~~l~iwDtaG~e- 62 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEK--KFMADCP-HTIGVEFGTRIIEV------------NGQ---KIKLQIWDTAGQE- 62 (166)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC--CCCCCCC-CCCCEEEEEEEEEE------------CCE---EEEEEEEECCCCC-
T ss_conf 499999999995799999999129--8899999-97446889999999------------999---9999999899985-
Q ss_pred CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 32224663289999873037478850123454211345776732157889888876433222457777787520320467
Q gi|254780226|r 80 GASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEI 159 (367)
Q Consensus 80 gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~ 159 (367)
+-+.+-. ...|+||++|.|.|...-+ + + +.++ .|
T Consensus 63 ---~~~~~~~---~~~~~a~~~ilvydvt~~~-------S------f------------~~l~-~w-------------- 96 (166)
T cd04122 63 ---RFRAVTR---SYYRGAAGALMVYDITRRS-------T------Y------------NHLS-SW-------------- 96 (166)
T ss_pred ---CCCCCCH---HHEECCCEEEEEECCCCHH-------H------H------------HHHH-HH--------------
T ss_conf ---4442521---1143154659972587476-------7------9------------9999-99--------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 77899999889988758741034431326777621023576410100100343011101013467877886436984033
Q gi|254780226|r 160 VLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMII 239 (367)
Q Consensus 160 ~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~ 239 (367)
+++ ++.. .. ...|+++|+||+|.+... ....++..+++.+.+..++-
T Consensus 97 -------------~~~---~~~~-----------~~-----~~~~iilVGNK~DL~~~r-~V~~~e~~~~a~~~~~~~~E 143 (166)
T cd04122 97 -------------LTD---ARNL-----------TN-----PNTVIFLIGNKADLEAQR-DVTYEEAKQFADENGLLFLE 143 (166)
T ss_pred -------------HHH---HHHH-----------CC-----CCCEEEECCCCCCHHHCC-CCCHHHHHHHHHHCCCEEEE
T ss_conf -------------999---9985-----------69-----997587034015744438-99999999999986998999
Q ss_pred CCCHHHHHH
Q ss_conf 210024665
Q gi|254780226|r 240 ISAAIEAEI 248 (367)
Q Consensus 240 isa~~E~ei 248 (367)
+||+....+
T Consensus 144 ~SAk~g~nV 152 (166)
T cd04122 144 CSAKTGENV 152 (166)
T ss_pred ECCCCCCCH
T ss_conf 865878088
No 147
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.07 E-value=0.00024 Score=49.01 Aligned_cols=148 Identities=21% Similarity=0.240 Sum_probs=84.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 4867528887888999987404898736668674488337-997685558777642186502335799985122354322
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
||-++|-++||||+|.+..+... =..+|. +|+..+.- .+. .++. ...+++.|.||--.
T Consensus 3 KIvlvGd~~VGKTsli~r~~~~~--f~~~y~-~Ti~~~~~k~i~------------~~~~---~~~l~iwDtaG~e~--- 61 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGH--FVESYY-PTIENTFSKIIR------------YKGQ---DYHLEIVDTAGQDE--- 61 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCC-CCCCCCCCEEEE------------ECCE---EEEEEEEECCCCCC---
T ss_conf 89999989988999999997097--899858-812441137999------------9999---99999998998701---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
-+.+-. ...|++|++|.|-|...-+. + +.++.-|++..
T Consensus 62 -~~~~~~---~~~~~a~~~ilvydvt~~~S-------------f------------~~~~~~~~~~~------------- 99 (180)
T cd04137 62 -YSILPQ---KYSIGIHGYILVYSVTSRKS-------------F------------EVVKVIYDKIL------------- 99 (180)
T ss_pred -CCHHHH---HHHHHCCEEEEEEECCCHHH-------------H------------HHHHHHHHHHH-------------
T ss_conf -006679---99863557899974388788-------------9------------99999999999-------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
..... ..-|+++|+||+|..... ....++.++++.+.+..++-+||
T Consensus 100 -----------------------------~~~~~----~~~piilVgNK~DL~~~r-~V~~~e~~~~a~~~~~~f~EtSA 145 (180)
T cd04137 100 -----------------------------DMLGK----ESVPIVLVGNKSDLHTQR-QVSTEEGKELAESWGAAFLESSA 145 (180)
T ss_pred -----------------------------HHHCC----CCCCEEEEEECCCCHHHC-CCCHHHHHHHHHHCCCEEEEECC
T ss_conf -----------------------------97588----888679776534624407-88999999999983998999776
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
+....+
T Consensus 146 k~g~nV 151 (180)
T cd04137 146 RENENV 151 (180)
T ss_pred CCCCCH
T ss_conf 889198
No 148
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=98.06 E-value=4.6e-06 Score=60.67 Aligned_cols=35 Identities=31% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEEECCCCCHHHHHHHHHCC-----CCCCCCCCCCCCCC
Q ss_conf 867528887888999987404-----89873666867448
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRT-----ASAQAANYPFCTIE 39 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~-----~~~~~~~ypFtTi~ 39 (367)
+=+||..|||||||||++-.. ...-++.||=||++
T Consensus 165 vyvVG~tNvGKSTLiN~ll~~~~~~~~~iT~S~~PGTTL~ 204 (367)
T PRK13796 165 VYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD 204 (367)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 8999157575899999999871678773134489986303
No 149
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.06 E-value=7e-06 Score=59.40 Aligned_cols=54 Identities=37% Similarity=0.373 Sum_probs=40.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCC
Q ss_conf 248675288878889999874048-98736668674488337997685558777642186502335799985122
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTA-SAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAG 76 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~-~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaG 76 (367)
..|.++|-.|||||||.|++|+.. .|.+++.|=.|-.+|-=.+.- ++-+||+||
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~--------------------~~~lVDlPG 79 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD--------------------ELRLVDLPG 79 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECC--------------------CEEEEECCC
T ss_conf 6799981686668999999967863556579998542367998358--------------------579981799
No 150
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.05 E-value=7.1e-06 Score=59.37 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=23.6
Q ss_pred HHCCCHHEECCCHHHHCCCHHHHHHHHHHHH-----H---CCCCCCCCCCHHHHHHH
Q ss_conf 4101001003430111010134678778864-----3---69840332100246655
Q gi|254780226|r 201 TAKPILYICNVSEHDCKKGNIYTEAVQRLAS-----Q---QNAEMIIISAAIEAEIS 249 (367)
Q Consensus 201 t~KP~iivaNk~e~~~~~~n~~~e~i~~l~~-----~---~~~~~i~isa~~E~ei~ 249 (367)
..||+++|+||.|.=..+.+. ..++.|.. . +-..++++||+...-+.
T Consensus 60 ~~~~v~lV~NK~DLLp~~~~~--~~~~~~~~~~~~~~~~~~~~~v~lvSa~~~~gi~ 114 (190)
T cd01855 60 GNNPVILVGNKIDLLPKDKNL--VRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVE 114 (190)
T ss_pred CCCCEEEEEEHHHHCCCCCCH--HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHH
T ss_conf 798689999815517887658--8889899999750159984317997665786989
No 151
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.04 E-value=1.2e-05 Score=57.75 Aligned_cols=87 Identities=21% Similarity=0.339 Sum_probs=49.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
++.||++|-+++|||||-||+-|...-+-+.-|-...+...-....|+| ++- .+.+.|+||.-..+
T Consensus 1 pl~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~eTT~~~~~Y~~p------------~~p--nv~lwDlPG~Gt~~ 66 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP------------KFP--NVTLWDLPGIGSTA 66 (197)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCC------------CCC--CCEEECCCCCCCCC
T ss_conf 9179995589986899999986889887775888887467786204799------------999--87697289999876
Q ss_pred CCCCCCHHHHHHH--HHCCCEEEEEEC
Q ss_conf 2246632899998--730374788501
Q gi|254780226|r 82 SKGEGLGNQFLAH--IREVDAIIHVLR 106 (367)
Q Consensus 82 ~~G~GlGN~FL~~--ir~aDalihVVd 106 (367)
---++.|.. ..++|.+|.|.+
T Consensus 67 ----f~~~~Yl~~~~~~~yD~fiiiss 89 (197)
T cd04104 67 ----FPPDDYLEEMKFSEYDFFIIISS 89 (197)
T ss_pred ----CCHHHHHHHCCCCCCCEEEEEEC
T ss_conf ----59899998658554578999838
No 152
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.04 E-value=0.00016 Score=50.27 Aligned_cols=144 Identities=24% Similarity=0.278 Sum_probs=83.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE--EECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 248675288878889999874048987366686744883379--976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE--VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~--~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
+||-++|-++||||+|....+.. . =..+|. .||..+... +.+ +++ ..++++.|.||--.-
T Consensus 3 ~Kiv~lGd~~VGKTsli~r~~~~-~-F~~~~~-~Tig~d~~~k~i~v------------~~~---~v~l~iwDtaG~e~~ 64 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAG-R-FPERTE-ATIGVDFRERTVEI------------DGE---RIKVQLWDTAGQERF 64 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC-C-CCCCCC-CCEEEEEEEEEEEE------------CCE---EEEEEEEECCCCHHH
T ss_conf 99999997997799999999539-8-899878-86307878999999------------999---999999977885305
Q ss_pred CCCCCCCHHHHH-HHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 222466328999-9873037478850123454211345776732157889888876433222457777787520320467
Q gi|254780226|r 81 ASKGEGLGNQFL-AHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEI 159 (367)
Q Consensus 81 A~~G~GlGN~FL-~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~ 159 (367)
. .... ...|+||++|.|-|...-+. + +.+ +.|
T Consensus 65 ~-------~s~~~~~~~~a~~~ilvydvt~~~S-------------f------------~~~-~~w-------------- 97 (170)
T cd04115 65 R-------KSMVQHYYRNVHAVVFVYDVTNMAS-------------F------------HSL-PSW-------------- 97 (170)
T ss_pred H-------HHHHHHHHCCCCEEEEEEECCCHHH-------------H------------HHH-HHH--------------
T ss_conf 6-------7778998457735799950474767-------------9------------999-999--------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 77899999889988758741034431326777621023576410100100343011101013467877886436984033
Q gi|254780226|r 160 VLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMII 239 (367)
Q Consensus 160 ~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~ 239 (367)
+++ ++ ....-..-|+++|+||.|.... .....++.+++|.+.+..++-
T Consensus 98 -------------~~~---i~---------------~~~~~~~~p~vlVGNK~DL~~~-r~Vs~~e~~~~a~~~~~~~~E 145 (170)
T cd04115 98 -------------IEE---CE---------------QHSLPNEVPRILVGNKCDLREQ-IQVPTDLAQRFADAHSMPLFE 145 (170)
T ss_pred -------------HHH---HH---------------HHCCCCCCCEEEEEECCCCHHH-CCCCHHHHHHHHHHCCCEEEE
T ss_conf -------------999---99---------------8658889979999998213411-787999999999977999999
Q ss_pred CCCH
Q ss_conf 2100
Q gi|254780226|r 240 ISAA 243 (367)
Q Consensus 240 isa~ 243 (367)
+||+
T Consensus 146 ~SAK 149 (170)
T cd04115 146 TSAK 149 (170)
T ss_pred ECCC
T ss_conf 8889
No 153
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.03 E-value=0.00026 Score=48.79 Aligned_cols=154 Identities=20% Similarity=0.258 Sum_probs=83.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|-++||||+|....+.. . =..+|. +||-.+.-.-.+ ..+++ ...+++.|.||--.
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~-~-f~~~y~-~Tig~d~~~k~i----------~~~~~---~~~l~iwDtaG~e~--- 61 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNK-K-FSNQYK-ATIGADFLTKEV----------TVDDK---LVTLQIWDTAGQER--- 61 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC-C-CCCCCC-CCCCEEEEEEEE----------EECCE---EEEEEEEECCCCHH---
T ss_conf 98999998997899999999529-8-898757-755516999999----------99999---99999996999831---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
=+.+... ..|+||++|.|-|...-.. .+. +. .|-.
T Consensus 62 -~~~l~~~---~~~~a~~~ilvydvt~~~S----------f~~---------------l~-~w~~--------------- 96 (172)
T cd01862 62 -FQSLGVA---FYRGADCCVLVYDVTNPKS----------FES---------------LD-SWRD--------------- 96 (172)
T ss_pred -HHHHHHH---HHHHCCEEEEEECCCCHHH----------HHH---------------HH-HHHH---------------
T ss_conf -1068899---8652757999933899899----------999---------------99-9999---------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCC-CCCCCCC
Q ss_conf 999998899887587410344313267776210235764101001003430111010134678778864369-8403321
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQN-AEMIIIS 241 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~-~~~i~is 241 (367)
.+ +.... .+ + ....|+++|+||.|.... ..+..++..+++.+.+ ..++-+|
T Consensus 97 -~~-------~~~~~-~~------~------------~~~~piilvgNK~Dl~~~-r~V~~~e~~~~a~~~~~~~~~E~S 148 (172)
T cd01862 97 -EF-------LIQAS-PS------D------------PENFPFVVLGNKIDLEEK-RQVSTKKAQQWCQSNGNIPYFETS 148 (172)
T ss_pred -HH-------HHHCC-CC------C------------CCCCCEEEEEECCCHHHC-CCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf -99-------99727-67------7------------657638999633683641-899999999999976997899975
Q ss_pred CHHHHHH
Q ss_conf 0024665
Q gi|254780226|r 242 AAIEAEI 248 (367)
Q Consensus 242 a~~E~ei 248 (367)
|+....+
T Consensus 149 Ak~~~nV 155 (172)
T cd01862 149 AKEAINV 155 (172)
T ss_pred CCCCCCH
T ss_conf 2679198
No 154
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.02 E-value=0.00011 Score=51.37 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=83.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE--EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 24867528887888999987404898736668674488337--9976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG--EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g--~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
+||-++|-++||||+|.+..... . =..+|. +||..... .+.++ .. ..+++++.|+||-=.-
T Consensus 1 fKvvllGd~gVGKTsLi~rf~~~-~-F~~~y~-~Tig~df~~k~i~~~------------~~--~~v~l~iwDtaGqe~~ 63 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHG-I-FSQHYK-ATIGVDFALKVIEWD------------PN--TVVRLQLWDIAGQERF 63 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCEEEEEEEEEEC------------CC--EEEEEEEEECCCCCCC
T ss_conf 97999999997899999999829-9-999888-875677899899967------------98--1999999868998322
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV 160 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~ 160 (367)
..|-. ...|+|+++|.|.|....+. .+. +. .|-+
T Consensus 64 ----~~l~~---~y~~~a~~~ilvydvt~~~S----------f~~-------l~---------~w~~------------- 97 (201)
T cd04107 64 ----GGMTR---VYYRGAVGAIIVFDVTRPST----------FEA-------VL---------KWKA------------- 97 (201)
T ss_pred ----CCCHH---HHCCCCCEEEEEEECCCHHH----------HHH-------HH---------HHHH-------------
T ss_conf ----20037---55557764799982798899----------998-------99---------9999-------------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCC-CCCC
Q ss_conf 789999988998875874103443132677762102357641010010034301110101346787788643698-4033
Q gi|254780226|r 161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNA-EMII 239 (367)
Q Consensus 161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~-~~i~ 239 (367)
.+.. .++. .+.+ .-|+++|+||.|..... ....++..+++.+.+. .++.
T Consensus 98 -----------~i~~--~~~~----~~~~------------~ipiilVgNK~DL~~~~-~v~~ee~~~~a~~~~~~~~~E 147 (201)
T cd04107 98 -----------DLDS--KVTL----PNGE------------PIPCLLLANKCDLKKRL-AKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred -----------HHHH--HHHC----CCCC------------CCCEEEEEECCCCCCCC-CCCHHHHHHHHHHCCCCEEEE
T ss_conf -----------9999--8621----3789------------87189986655641125-689999999999779980999
Q ss_pred CCCHHHHHH
Q ss_conf 210024665
Q gi|254780226|r 240 ISAAIEAEI 248 (367)
Q Consensus 240 isa~~E~ei 248 (367)
+||+...-+
T Consensus 148 tSAktg~nV 156 (201)
T cd04107 148 TSAKEGINI 156 (201)
T ss_pred ECCCCCCCH
T ss_conf 779999498
No 155
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.01 E-value=0.00016 Score=50.17 Aligned_cols=150 Identities=21% Similarity=0.287 Sum_probs=85.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
.||-++|-++||||++....+... =...|. +||...... .+ ..+++ ...+++.|.||--
T Consensus 3 ~Kiv~lGd~~VGKTsli~r~~~~~--f~~~~~-pTi~~~~~~-~i----------~i~~~---~~~l~iwDtaGqe---- 61 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS--FPDYHD-PTIEDAYKQ-QA----------RIDNE---PALLDILDTAGQA---- 61 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CCCCCCEEE-EE----------EECCE---EEEEEEEECCCCC----
T ss_conf 699999999977999999997098--998758-842220369-99----------99999---9999999788851----
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
+=+.+-.. .+|+||++|.|-|...-.. ++ .+. .|-
T Consensus 62 ~~~~l~~~---~~r~a~~~ilvydvt~~~S-------------f~------------~~~-~w~---------------- 96 (172)
T cd04141 62 EFTAMRDQ---YMRCGEGFIICYSVTDRHS-------------FQ------------EAS-EFK---------------- 96 (172)
T ss_pred CCCCCHHH---HHCCCCEEEEEECCCCHHH-------------HH------------HHH-HHH----------------
T ss_conf 35745155---6427865688731688889-------------99------------999-999----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
+.+.. .+. . ..-|+++|+||.|....+ ....++..+++.+.+..++-+||
T Consensus 97 --------~~i~~---~~~-----~-------------~~~piilvGNK~DL~~~r-~Vs~~e~~~~a~~~~~~f~EtSA 146 (172)
T cd04141 97 --------KLITR---VRL-----T-------------EDIPLVLVGNKVDLESQR-QVTTEEGRNLAREFNCPFFETSA 146 (172)
T ss_pred --------HHHHH---HHC-----C-------------CCCCEEEEEECCCHHHHC-CCCHHHHHHHHHHCCCEEEEECC
T ss_conf --------99999---728-----8-------------998689985045667618-88999999999985997999747
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
+....+
T Consensus 147 k~~~nV 152 (172)
T cd04141 147 ALRHYI 152 (172)
T ss_pred CCCCCH
T ss_conf 888288
No 156
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.00 E-value=5.6e-05 Score=53.32 Aligned_cols=88 Identities=19% Similarity=0.297 Sum_probs=64.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
+|.|=++||..||||+..|.+-|-..+.+..|-=+|..|..-.-.+ -..++.++|.|||++++
T Consensus 31 sltILvlGKtGVGKSsTINSifgE~~~~~~aF~~~t~r~~~v~~tv-----------------~G~kl~iIDTPGL~~~~ 93 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV-----------------DGFKLNIIDTPGLLESV 93 (249)
T ss_pred EEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE-----------------CCEEEEEECCCCCCCCC
T ss_conf 3699998068764577677650854134477677886508998753-----------------34489986089877665
Q ss_pred CCCCCCHHHHHHHHHC------CCEEEEEECC
Q ss_conf 2246632899998730------3747885012
Q gi|254780226|r 82 SKGEGLGNQFLAHIRE------VDAIIHVLRC 107 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~------aDalihVVda 107 (367)
+.+ ..--+.|+.|+. -|++++|=|-
T Consensus 94 ~~~-~~N~k~l~~iKr~l~~~~~DvvLYvDRL 124 (249)
T cd01853 94 MDQ-RVNRKILSSIKRYLKKKTPDVVLYVDRL 124 (249)
T ss_pred CCC-HHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 422-1309999999999628999789998457
No 157
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.99 E-value=0.00016 Score=50.30 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=50.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCE-EEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 486752888788899998740489873666867448833-7997685558777642186502335799985122354322
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNS-GEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~-g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
||-++|-++||||+|.+..+.. .=..+|+ +|++... -.+.+ ++ .+..+++.|.||- .
T Consensus 1 KIvvlGd~~VGKTSLi~rf~~~--~F~~~y~-~Ti~~~~~k~~~v------------~~---~~v~l~i~DtaG~----e 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYD--TFEPKYR-RTVEEMHRKEYEV------------GG---VSLTLDILDTSGS----Y 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHC--CCCCCCC-CCHHHEEEEEEEE------------CC---EEEEEEEEECCCC----C
T ss_conf 9899998997799999999859--8998888-8725418899998------------99---7999999978775----1
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 24663289999873037478850123
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
+-..+ .-..+|+||++|.|-|..
T Consensus 59 ~~~~l---~~~~~r~a~~~ilVyDit 81 (198)
T cd04147 59 SFPAM---RKLSIQNSDAFALVYAVD 81 (198)
T ss_pred CCHHH---HHHHCCCCCEEEEEEECC
T ss_conf 30145---555415886689996169
No 158
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.99 E-value=0.00018 Score=49.91 Aligned_cols=149 Identities=16% Similarity=0.226 Sum_probs=85.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||-++|-++||||+|.+..+.. . =..+|. |.+|....... ..+++ ..++++.|.||--.
T Consensus 2 t~Kiv~lGd~~VGKTsli~r~~~~-~-f~~~y~-----~Ti~~~~~k~~-------~~~~~---~~~l~iwDtaG~e~-- 62 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQS-Y-FVTDYD-----PTIEDSYTKQC-------EIDGQ---WAILDILDTAGQEE-- 62 (164)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCC-C-CCCCCC-----CCEEEEEEEEE-------EECCE---EEEEEEEECCCCCC--
T ss_conf 379999999997889999999809-8-987567-----84135899999-------99999---99999998988603--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
-+.+-. ..+|+||+++.|-|...-. + .++ +++-|+..
T Consensus 63 --~~~~~~---~~~~~a~~~ilvydi~~~~-------S---f~~---------------~~~~~~~i------------- 99 (164)
T cd04145 63 --FSAMRE---QYMRTGEGFLLVFSVTDRG-------S---FEE---------------VDKFHTQI------------- 99 (164)
T ss_pred --CCHHHH---HHHCCCCCCEEEEECCCHH-------H---HHH---------------HHHHHHHH-------------
T ss_conf --125679---8734678746898567354-------3---999---------------99999999-------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
++ . .. ...-|+++|+||+|.... .....++.++++.+.+..++-+|
T Consensus 100 -----------~~-------~------------~~---~~~~piilVgNK~DL~~~-r~Vs~~e~~~~a~~~~~~~~E~S 145 (164)
T cd04145 100 -----------LR-------V------------KD---RDEFPMILVGNKADLEHQ-RKVSREEGQELARKLKIPYIETS 145 (164)
T ss_pred -----------HH-------H------------CC---CCCCCEEEECCCCCHHHH-CCCCHHHHHHHHHHCCCEEEEEC
T ss_conf -----------98-------6------------18---877752653034573540-88999999999998199899985
Q ss_pred CHHHH
Q ss_conf 00246
Q gi|254780226|r 242 AAIEA 246 (367)
Q Consensus 242 a~~E~ 246 (367)
|+...
T Consensus 146 Ak~~~ 150 (164)
T cd04145 146 AKDRL 150 (164)
T ss_pred CCCCC
T ss_conf 48682
No 159
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.99 E-value=0.00013 Score=50.76 Aligned_cols=147 Identities=18% Similarity=0.250 Sum_probs=83.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337-99768555877764218650233579998512235432
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
+||-++|-++||||+|.+..+.. . =..+|. +||....- .+. .+++ ...+++.|.||--.
T Consensus 2 fKivllGd~~VGKTsli~r~~~~-~-f~~~y~-~Ti~~~~~k~i~------------~~~~---~~~l~iwDtaG~e~-- 61 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQG-I-FVEKYD-PTIEDSYRKQIE------------VDGQ---QCMLEILDTAGTEQ-- 61 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCCEEEEEEE------------ECCE---EEEEEECCCCCCHH--
T ss_conf 19999899998899999999719-5-988669-954206999999------------9999---99998645765445--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
-+.+-. ..+|+||++|.|-|...-.. ++ .+.. |
T Consensus 62 --~~~~~~---~y~~~a~~~ilvydvt~~~S-------------f~------------~l~~-~---------------- 94 (163)
T cd04136 62 --FTAMRD---LYIKNGQGFVLVYSITSQSS-------------FN------------DLQD-L---------------- 94 (163)
T ss_pred --HHHHHH---HHHCCCCEEEEEECCCCHHH-------------HH------------HHHH-H----------------
T ss_conf --556789---88346876999704898899-------------99------------9999-9----------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
|. +... .+. ...-|+++|+||+|....+ ....+....++.+.+..++-+|
T Consensus 95 ------------------------~~-~i~~-~~~---~~~~piilVGnK~Dl~~~r-~v~~~~~~~~a~~~~~~~~E~S 144 (163)
T cd04136 95 ------------------------RE-QILR-VKD---TENVPMVLVGNKCDLEDER-VVSREEGQALARQWGCPFYETS 144 (163)
T ss_pred ------------------------HH-HHHH-HCC---CCCCCEEEEECCCCHHHHC-CCCHHHHHHHHHHCCCEEEEEC
T ss_conf ------------------------99-9998-618---8888678762354726407-8999999999998499899974
Q ss_pred CHHHH
Q ss_conf 00246
Q gi|254780226|r 242 AAIEA 246 (367)
Q Consensus 242 a~~E~ 246 (367)
|+...
T Consensus 145 Ak~~~ 149 (163)
T cd04136 145 AKSKI 149 (163)
T ss_pred CCCCC
T ss_conf 48780
No 160
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.98 E-value=0.00017 Score=50.01 Aligned_cols=148 Identities=20% Similarity=0.289 Sum_probs=84.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 824867528887888999987404898736668674488337-9976855587776421865023357999851223543
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
.+||-++|-++||||+|.+..... . -..+|. +|+..... .+.+ ++ .+..+++.|.||--.-
T Consensus 1 ~~KivllGd~~VGKTsli~r~~~~-~-f~~~y~-pTi~~~~~k~i~~------------~~---~~~~l~iwDtaG~e~~ 62 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSG-T-FIEKYD-PTIEDFYRKEIEV------------DS---SPSVLEILDTAGTEQF 62 (163)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCCEEEEEEEE------------CC---EEEEEEEEECCCCHHH
T ss_conf 939999899997899999999709-8-997558-8523316799998------------88---9999999989885425
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV 160 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~ 160 (367)
+.+- -..+|+||++|.|-|...-+. ++ .+.+ |
T Consensus 63 ----~~~~---~~~~~~a~~~ilvydit~~~S-------------f~------------~l~~-~--------------- 94 (163)
T cd04176 63 ----ASMR---DLYIKNGQGFIVVYSLVNQQT-------------FQ------------DIKP-M--------------- 94 (163)
T ss_pred ----HHHH---HHHHCCCCEEEEEECCCCHHH-------------HH------------HHHH-H---------------
T ss_conf ----6788---998557865689712798899-------------99------------9999-9---------------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 78999998899887587410344313267776210235764101001003430111010134678778864369840332
Q gi|254780226|r 161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIII 240 (367)
Q Consensus 161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~i 240 (367)
|. +... .... ..-|+++|+||.|....+ ....++.++++.+.+..++-+
T Consensus 95 -------------------------~~-~i~~-~~~~---~~~piilVgNK~DL~~~r-~V~~~e~~~~a~~~~~~~~E~ 143 (163)
T cd04176 95 -------------------------RD-QIVR-VKGY---EKVPIILVGNKVDLESER-EVSSAEGRALAEEWGCPFMET 143 (163)
T ss_pred -------------------------HH-HHHH-HHCC---CCCEEEEEEECCCCCCCC-CCCHHHHHHHHHHCCCEEEEE
T ss_conf -------------------------99-9999-7389---996399974313400127-699999999999859989998
Q ss_pred CCHHHH
Q ss_conf 100246
Q gi|254780226|r 241 SAAIEA 246 (367)
Q Consensus 241 sa~~E~ 246 (367)
||+...
T Consensus 144 SAk~~~ 149 (163)
T cd04176 144 SAKSKT 149 (163)
T ss_pred CCCCCC
T ss_conf 568781
No 161
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.98 E-value=0.00012 Score=51.03 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=86.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE--EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 24867528887888999987404898736668674488337--9976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG--EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g--~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
|||-+||-+.||||+|++..+.. .-....|+ +||..... .+.+. + ....+++.|.||.-.-
T Consensus 1 vKivlvGd~~VGKTsLi~r~~~~-~f~~~~y~-~tig~~~~~k~i~v~------------~---~~v~l~iwDtaG~e~~ 63 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHH-RFLVGPYQ-NTIGAAFVAKRMVVG------------E---RVVTLGIWDTAGSERY 63 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-CCCCCCCC-CCCEEEEEEEEEEEC------------C---EEEEEEEEECCCCHHH
T ss_conf 98999996998799999999859-79989978-763058899999999------------9---9999999919997312
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV 160 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~ 160 (367)
. .+ --...|+||++|.|-|...-+. ++ .+ +.|
T Consensus 64 ~----~l---~~~y~~~a~~~ilvydit~~~S-------------f~------------~i-~~W--------------- 95 (193)
T cd04118 64 E----AM---SRIYYRGAKAAIVCYDLTDSSS-------------FE------------RA-KFW--------------- 95 (193)
T ss_pred H----HH---HHHHHCCCCEEEEEECCCCHHH-------------HH------------HH-HHH---------------
T ss_conf 3----55---7988347744578830698799-------------99------------89-999---------------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHC---CCHHHHHHHHHHHHHCCCCC
Q ss_conf 789999988998875874103443132677762102357641010010034301110---10134678778864369840
Q gi|254780226|r 161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCK---KGNIYTEAVQRLASQQNAEM 237 (367)
Q Consensus 161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~---~~n~~~e~i~~l~~~~~~~~ 237 (367)
-.+... . -..-|+++|+||.|.... ......++..+++.+.+..+
T Consensus 96 --------------------------~~~i~~-~-----~~~~~iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~~~~ 143 (193)
T cd04118 96 --------------------------VKELQN-L-----EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQH 143 (193)
T ss_pred --------------------------HHHHHH-H-----CCCCCEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf --------------------------999997-4-----89999799977466322016664468999999999809969
Q ss_pred CCCCCHHHHHH
Q ss_conf 33210024665
Q gi|254780226|r 238 IIISAAIEAEI 248 (367)
Q Consensus 238 i~isa~~E~ei 248 (367)
+-+||+.-.-+
T Consensus 144 ~E~SAktg~nV 154 (193)
T cd04118 144 FETSSKTGQNV 154 (193)
T ss_pred EEECCCCCCCH
T ss_conf 99838989398
No 162
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.98 E-value=0.00033 Score=48.13 Aligned_cols=149 Identities=21% Similarity=0.247 Sum_probs=84.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||-++|-++||||+|.+..+... =..+| .|.+|.....- .-..++ ...++++.|+||-=.
T Consensus 1 ~~KivviGd~~vGKTsli~r~~~~~--f~~~~-----~~Tig~~~~~k------~i~~~~---~~v~l~iwDtaG~e~-- 62 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNE--FSENQ-----ESTIGAAFLTQ------TVNLDD---TTVKFEIWDTAGQER-- 62 (163)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCC--CCCCC-----CCCCCEEEEEE------EEEECC---EEEEEEEEECCCCHH--
T ss_conf 9799999959968999999994398--99986-----88666788999------999999---999999997999710--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
-+.+-. ..+|+||+++.|.|...-.. ++- ++ .|-
T Consensus 63 --~~~~~~---~~~~~a~~~ilvydit~~~S-------------f~~------------~~-~w~--------------- 96 (163)
T cd01860 63 --YRSLAP---MYYRGAAAAIVVYDITSEES-------------FEK------------AK-SWV--------------- 96 (163)
T ss_pred --HHHHHH---HHHCCCCCEEEEEECCCHHH-------------HHH------------HH-HHH---------------
T ss_conf --027889---88516771499981899799-------------999------------99-999---------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
.. +.. ... ..-|+++|+||+|..... ....++..+++.+.+..++-+|
T Consensus 97 -----~~----i~~---------~~~-------------~~~~iilVgnK~DL~~~r-~V~~~e~~~~a~~~~~~~~E~S 144 (163)
T cd01860 97 -----KE----LQR---------NAS-------------PNIIIALVGNKADLESKR-QVSTEEAQEYADENGLLFFETS 144 (163)
T ss_pred -----HH----HHH---------HCC-------------CCCEEEEEEECCCHHHCC-CCCHHHHHHHHHHCCCEEEEEC
T ss_conf -----99----998---------559-------------872367755335756508-9999999999998299799986
Q ss_pred CHHHH
Q ss_conf 00246
Q gi|254780226|r 242 AAIEA 246 (367)
Q Consensus 242 a~~E~ 246 (367)
|+...
T Consensus 145 Ak~~~ 149 (163)
T cd01860 145 AKTGE 149 (163)
T ss_pred CCCCC
T ss_conf 26590
No 163
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.98 E-value=0.00036 Score=47.92 Aligned_cols=147 Identities=21% Similarity=0.258 Sum_probs=81.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||-+||-++||||||.+..... . -..+| .|.+|.-... +.. -+++ .+.++++.|+||--.
T Consensus 2 Ki~vvG~~~vGKTsli~r~~~~-~-f~~~~-----~~tig~d~~~-----k~v-~~~~---~~~~l~i~D~~g~e~---- 61 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYD-T-FDNQY-----QATIGIDFLS-----KTM-YLED---KTVRLQLWDTAGQER---- 61 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHC-C-CCCCC-----CCCCCEEEEE-----EEE-EECC---EEEEEEEEECCCCHH----
T ss_conf 7999997997899999999319-9-99984-----8975678899-----999-9999---999999997998531----
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
..+-.-..++++|++|.|-|....+ .++ .+. +|
T Consensus 62 ---~~~~~~~~~~~~~~~ilvfd~t~~~----------------Sf~---------~~~-~w------------------ 94 (161)
T cd01861 62 ---FRSLIPSYIRDSSVAVVVYDITNRQ----------------SFD---------NTD-KW------------------ 94 (161)
T ss_pred ---HHHHHHHHHHHHCEEEEEEECCCHH----------------HHH---------HHH-HH------------------
T ss_conf ---5788898866525899998479989----------------999---------999-99------------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 99998899887587410344313267776210235764101001003430111010134678778864369840332100
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAA 243 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~ 243 (367)
+.. ++.. . ...-|+++|+||+|.+... ....++...++.+.+..++-+||+
T Consensus 95 ---------~~~---i~~~---~-------------~~~~~ivlvGnK~Dl~~~r-~v~~~e~~~~a~~~~~~y~E~Sak 145 (161)
T cd01861 95 ---------IDD---VRDE---R-------------GNDVIIVLVGNKTDLSDKR-QVSTEEGEKKAKELNAMFIETSAK 145 (161)
T ss_pred ---------HHH---HHHH---C-------------CCCCEEEEEEECCCCHHCC-CCCHHHHHHHHHHCCCEEEEECCC
T ss_conf ---------999---9986---5-------------7898499961021102217-789999999999849989998347
Q ss_pred HHH
Q ss_conf 246
Q gi|254780226|r 244 IEA 246 (367)
Q Consensus 244 ~E~ 246 (367)
...
T Consensus 146 ~~~ 148 (161)
T cd01861 146 AGH 148 (161)
T ss_pred CCC
T ss_conf 780
No 164
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.98 E-value=0.00027 Score=48.70 Aligned_cols=150 Identities=21% Similarity=0.223 Sum_probs=84.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||-++|-++||||+|....+... -..+|+ +|+..+...-.+. .+++ ..++++.|.||--.
T Consensus 3 ~~Kiv~lGd~~vGKTsli~r~~~~~--f~~~~~-~Ti~~~~~~k~i~----------~~~~---~~~l~iwDtaG~e~-- 64 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGT--FSERQG-NTIGVDFTMKTLE----------IEGK---RVKLQIWDTAGQER-- 64 (165)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CCCCEEEEEEEEE----------ECCE---EEEEEEEECCCCCC--
T ss_conf 8999999999958999999996499--999879-9754378999999----------9999---99999998999834--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
-+.+-. ..+|+||++|.|.|...-.. + +.+. .|
T Consensus 65 --~~~l~~---~~~~~a~~~ilvydit~~~S-------------f------------~~~~-~w---------------- 97 (165)
T cd01864 65 --FRTITQ---SYYRSANGAIIAYDITRRSS-------------F------------ESVP-HW---------------- 97 (165)
T ss_pred --CCCCCH---HHEECCCEEEEEECCCCHHH-------------H------------HHHH-HH----------------
T ss_conf --453507---55221566699713899899-------------9------------9999-99----------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCC-CCCC
Q ss_conf 899999889988758741034431326777621023576410100100343011101013467877886436984-0332
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAE-MIII 240 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~-~i~i 240 (367)
+++ ++.. . ...-|+++|+||.|....+ ....+...+++.+.+.. ++-+
T Consensus 98 -----------~~~---i~~~----~------------~~~~~iilVGNK~DL~~~r-~V~~~~~~~~a~~~~~~~~~E~ 146 (165)
T cd01864 98 -----------IEE---VEKY----G------------ASNVVLLLIGNKCDLEEQR-EVLFEEACTLAEKNGMLAVLET 146 (165)
T ss_pred -----------HHH---HHHH----C------------CCCCCEEEEEECCCHHHHC-CCCHHHHHHHHHHCCCCEEEEE
T ss_conf -----------999---9987----6------------9998438887723768628-9999999999998399769997
Q ss_pred CCHHHHH
Q ss_conf 1002466
Q gi|254780226|r 241 SAAIEAE 247 (367)
Q Consensus 241 sa~~E~e 247 (367)
||+.-.-
T Consensus 147 SAk~~~n 153 (165)
T cd01864 147 SAKESQN 153 (165)
T ss_pred CCCCCCC
T ss_conf 8885819
No 165
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.97 E-value=0.00017 Score=50.02 Aligned_cols=149 Identities=17% Similarity=0.231 Sum_probs=87.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-|+|-++||||+|....+.. .-...|. |.+|.....- .-..+++ .+++++.|+||- -
T Consensus 7 ~KivllGd~~VGKTsl~~r~~~~--~f~~~y~-----~Tig~~~~~k------~~~~~~~---~v~l~iwDtaGq----e 66 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDG--STESPYG-----YNMGIDYKTT------TILLDGR---RVKLQLWDTSGQ----G 66 (189)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC--CCCCCCC-----CCCCEEEEEE------EEEECCE---EEEEEEECCCCC----C
T ss_conf 99999998997899999999749--9789868-----7653798999------9999999---999999817886----2
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
+-.++.. ..+|+|+++|.|-|...-.. + +.++ +|
T Consensus 67 ~f~~l~~---~y~r~a~~~ilvyDvt~~~S-------------f------------~~l~-~w----------------- 100 (189)
T cd04121 67 RFCTIFR---SYSRGAQGIILVYDITNRWS-------------F------------DGID-RW----------------- 100 (189)
T ss_pred CHHHHHH---HHHHHCCCEEEEECCCCHHH-------------H------------HHHH-HH-----------------
T ss_conf 2116789---88663370489822798899-------------9------------9999-99-----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
+..+.+ .. ..-|+++|+||+|... +.....+..+++|.+.+..++-+||
T Consensus 101 -------~~~i~~----------~~-------------~~~p~iLVGNK~DL~~-~r~V~~ee~~~~A~~~~~~f~EtSA 149 (189)
T cd04121 101 -------IKEIDE----------HA-------------PGVPKILVGNRLHLAF-KRQVATEQAQAYAERNGMTFFEVSP 149 (189)
T ss_pred -------HHHHHH----------HC-------------CCCCEEEEEECCCHHH-CCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf -------999999----------76-------------8987899613255033-0889999999999988999999600
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
+...-+
T Consensus 150 k~g~nV 155 (189)
T cd04121 150 LCNFNI 155 (189)
T ss_pred CCCCCH
T ss_conf 679398
No 166
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.97 E-value=0.00033 Score=48.14 Aligned_cols=148 Identities=18% Similarity=0.224 Sum_probs=85.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|-++||||+|++..... . =..+|. +||..+...-.+. .+.+ ..++++.|.||- .
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~-~-f~~~y~-~Tig~~~~~k~i~----------~~~~---~i~l~iwDtaGq----e 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADD-S-FTSAFV-STVGIDFKVKTVF----------RNDK---RVKLQIWDTAGQ----E 61 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC-C-CCCCCC-CCCCEEEEEEEEE----------ECCE---EEEEEEEECCCC----C
T ss_conf 89999999996889999999249-8-899768-8763787999999----------9999---999999969998----3
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
+-+.+-.. ..|+||++|.|-|...-+. ++ .+. .|-
T Consensus 62 ~~~~l~~~---y~~~a~~~ilvydit~~~S-------------f~------------~~~-~w~---------------- 96 (165)
T cd01865 62 RYRTITTA---YYRGAMGFILMYDITNEES-------------FN------------AVQ-DWS---------------- 96 (165)
T ss_pred CCCCCHHH---HHHCCCEEEEEECCCCHHH-------------HH------------HHH-HHH----------------
T ss_conf 45544154---4113544899851788799-------------99------------999-999----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
..+. ... ...-|+++|+||.|....+ ....++.++++.+.+..++-+||
T Consensus 97 --------~~i~---------------------~~~-~~~~~iilvgNK~DL~~~r-~v~~~~~~~~a~~~~~~~~E~SA 145 (165)
T cd01865 97 --------TQIK---------------------TYS-WDNAQVILVGNKCDMEDER-VVSSERGRQLADQLGFEFFEASA 145 (165)
T ss_pred --------HHHH---------------------HHC-CCCCEEEEEECCCCHHHCC-CCCHHHHHHHHHHCCCEEEEECC
T ss_conf --------9999---------------------868-9872599960242355518-89999999999986997999768
Q ss_pred HHHH
Q ss_conf 0246
Q gi|254780226|r 243 AIEA 246 (367)
Q Consensus 243 ~~E~ 246 (367)
+...
T Consensus 146 k~~~ 149 (165)
T cd01865 146 KENI 149 (165)
T ss_pred CCCC
T ss_conf 9890
No 167
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.95 E-value=0.00062 Score=46.30 Aligned_cols=151 Identities=20% Similarity=0.268 Sum_probs=86.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||=++|-++||||+|++..+.. .=..+|. .||......-.+ ..+++ ..++++-|+|| ..
T Consensus 1 lKIvllGd~gVGKTsLi~rf~~~--~F~~~y~-~Tig~d~~~k~i----------~~~~~---~v~l~IWDTaG----qe 60 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDD--TFCEACK-SGVGVDFKIKTV----------ELRGK---KIRLQIWDTAG----QE 60 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC--CCCCCCC-CCCCEEEEEEEE----------EECCE---EEEEEEEECCC----CC
T ss_conf 98999997997299999999549--9999879-976468899999----------99999---99999997988----61
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
+-+.+-.. ..|+|+++|.|-|...-+. + +.+. .|-
T Consensus 61 ~f~sl~~~---yyr~a~~~ilVyDit~~~S-------------F------------~~l~-~W~---------------- 95 (202)
T cd04120 61 RFNSITSA---YYRSAKGIILVYDITKKET-------------F------------DDLP-KWM---------------- 95 (202)
T ss_pred CCCCCHHH---HHHHHCEEEEEEECCCHHH-------------H------------HHHH-HHH----------------
T ss_conf 24523578---8764144589985688899-------------9------------9999-999----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHH-CCCCCCCCC
Q ss_conf 9999988998875874103443132677762102357641010010034301110101346787788643-698403321
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQ-QNAEMIIIS 241 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~-~~~~~i~is 241 (367)
..+.. ... ...|+++|+||.|....+ ....++.+++|.+ ++..++-+|
T Consensus 96 --------~~i~~------------------~~~----~~~~iiLVGNK~DL~~~R-~Vs~~e~~~~A~~~~~~~f~EtS 144 (202)
T cd04120 96 --------KMIDK------------------YAS----EDAELLLVGNKLDCETDR-EISRQQGEKFAQQITGMRFCEAS 144 (202)
T ss_pred --------HHHHH------------------HCC----CCCEEEEEEECCCCHHHC-CCCHHHHHHHHHHCCCCEEEECC
T ss_conf --------99997------------------466----887189876536505317-87999999999827998899925
Q ss_pred CHHHHHHH
Q ss_conf 00246655
Q gi|254780226|r 242 AAIEAEIS 249 (367)
Q Consensus 242 a~~E~ei~ 249 (367)
|+...-+.
T Consensus 145 Akt~~nV~ 152 (202)
T cd04120 145 AKDNFNVD 152 (202)
T ss_pred CCCCCCHH
T ss_conf 89996989
No 168
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.95 E-value=0.00018 Score=49.97 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=49.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHH-HHH--HHH---CCCCEEEEEEEEEEECCCC
Q ss_conf 4867528887888999987404898736668674488337997685558-777--642---1865023357999851223
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRM-HKL--AEI---AESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~-~~l--~~~---~~~~~~~p~~i~~iDvaGL 77 (367)
.|+++|-..+|||||..++...... +.. +-. ..-.+-|... .+. ..+ .-+..+-..++.++|.||-
T Consensus 4 Nv~iiGHvd~GKTTL~~~Ll~~tg~-~~~-~~~------~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH 75 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGT-FRE-NEE------VEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH 75 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-CCC-CCC------CCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCC
T ss_conf 8999906898799999999997487-630-465------21686147588887287633458999989988999989984
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 54322246632899998730374788501234
Q gi|254780226|r 78 VRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 78 v~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.- .......-++.||+-|.||||.+
T Consensus 76 ~d-------F~~~~~~~~~~~D~ailVVdA~~ 100 (194)
T cd01891 76 AD-------FGGEVERVLSMVDGVLLLVDASE 100 (194)
T ss_pred HH-------HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 77-------77789877643446789865378
No 169
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.94 E-value=0.0002 Score=49.67 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=83.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|-++||||+|.+..... .= ..+|. +|+..+.-.-.+. .+++ ..++++.|.||--
T Consensus 6 ~KivvlGd~~VGKTsli~r~~~~-~f-~~~~~-~Tig~~~~~k~i~----------~~~~---~v~l~iwDtaG~e---- 65 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTN-KF-DTQLF-HTIGVEFLNKDLE----------VDGH---FVTLQIWDTAGQE---- 65 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC-CC-CCCCC-CCCEEEEEEEEEE----------ECCE---EEEEEEEECCCCC----
T ss_conf 99999999997899999999739-89-99888-8760798999999----------9999---9999999899972----
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
+-+.+-. ...|+||++|.|-|...-.. .+ ++. .|-+
T Consensus 66 ~~~~l~~---~~~~~a~~~ilvydit~~~S----------f~-------~~~---------~w~~--------------- 101 (170)
T cd04116 66 RFRSLRT---PFYRGSDCCLLTFAVDDSQS----------FQ-------NLS---------NWKK--------------- 101 (170)
T ss_pred CCCCCHH---HHEECCCEEEEEEECCCHHH----------HH-------HHH---------HHHH---------------
T ss_conf 4352417---66004773399997888799----------99-------999---------9999---------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCC-CCCCCCC
Q ss_conf 999998899887587410344313267776210235764101001003430111010134678778864369-8403321
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQN-AEMIIIS 241 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~-~~~i~is 241 (367)
..+.... .. . ...-|+++++||+|.. +.....++.++++.+.+ ..++-+|
T Consensus 102 -----~~~~~~~----~~---------------~---~~~~piilvgnK~Dl~--~r~v~~~e~~~~a~~~~~~~~~E~S 152 (170)
T cd04116 102 -----EFIYYAD----VK---------------E---PESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGDYPYFETS 152 (170)
T ss_pred -----HHHHHHC----CC---------------C---CCCCEEEEEECCCHHH--HCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf -----9999714----45---------------7---8884099996111130--3788999999999985997899988
Q ss_pred CHHHHHH
Q ss_conf 0024665
Q gi|254780226|r 242 AAIEAEI 248 (367)
Q Consensus 242 a~~E~ei 248 (367)
|+...-+
T Consensus 153 Ak~g~nV 159 (170)
T cd04116 153 AKDATNV 159 (170)
T ss_pred CCCCCCH
T ss_conf 8888188
No 170
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.94 E-value=0.0005 Score=46.92 Aligned_cols=151 Identities=19% Similarity=0.277 Sum_probs=88.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE--EECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCC
Q ss_conf 8248675288878889999874048987366686744883379--97685558777642186502335799985122354
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE--VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVR 79 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~--~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~ 79 (367)
.+||=++|-+.||||+|....+... =..+|. +||..+... +.+. ++ ..+++++.|.||-
T Consensus 2 ~fKivllGd~~VGKTsL~~rf~~~~--F~~~~~-~Tig~df~~k~i~i~-----------dg---~~v~l~IwDTaGq-- 62 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGR--FAEVSD-PTVGVDFFSRLIEIE-----------PG---VRIKLQLWDTAGQ-- 62 (211)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CCCCEEEEEEEEEEC-----------CC---CEEEEEEEECCCC--
T ss_conf 7999999999961999999998199--999868-720168899899977-----------99---5999999979886--
Q ss_pred CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 32224663289999873037478850123454211345776732157889888876433222457777787520320467
Q gi|254780226|r 80 GASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEI 159 (367)
Q Consensus 80 gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~ 159 (367)
.+-+.+...+ .|+|+++|.|-|...-+. ++ .+. .|
T Consensus 63 --e~~~si~~~y---yr~a~g~ilVyDvt~~~S-------------F~------------~l~-~W-------------- 97 (211)
T cd04111 63 --ERFRSITRSY---YRNSVGVLLVFDITNRES-------------FE------------HVH-DW-------------- 97 (211)
T ss_pred --CCCCCCHHHH---HHHCCEEEEEECCCCHHH-------------HH------------HHH-HH--------------
T ss_conf --3456442877---421244689714777799-------------99------------999-99--------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 77899999889988758741034431326777621023576410100100343011101013467877886436984033
Q gi|254780226|r 160 VLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMII 239 (367)
Q Consensus 160 ~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~ 239 (367)
+++ ++. ..+ -..-|+++|+||.|.... .....++.+++|.+.+..++-
T Consensus 98 -------------~~e---i~~---~~~------------~~~~~iiLVGNK~DL~~~-R~Vs~ee~~~~A~~~~~~f~E 145 (211)
T cd04111 98 -------------LEE---ARS---HIQ------------PHRPVFILVGHKCDLESQ-RQVTREEAEKLAKDLGMKYIE 145 (211)
T ss_pred -------------HHH---HHH---HCC------------CCCCEEEEEEECCCHHHH-CCCCHHHHHHHHHHHCCEEEE
T ss_conf -------------999---999---749------------888538988742312856-788999999999983997999
Q ss_pred CCCHHHHHH
Q ss_conf 210024665
Q gi|254780226|r 240 ISAAIEAEI 248 (367)
Q Consensus 240 isa~~E~ei 248 (367)
+||+...-+
T Consensus 146 tSAK~g~nV 154 (211)
T cd04111 146 TSARTGDNV 154 (211)
T ss_pred ECCCCCCCH
T ss_conf 759998198
No 171
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.93 E-value=0.00017 Score=50.13 Aligned_cols=151 Identities=20% Similarity=0.194 Sum_probs=86.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
|||-++|-++||||+|....+... =..+|. .|+..+.-.-.+. .+.. -...++++.|.||--.
T Consensus 1 iKivvlGd~~VGKTsLi~r~~~~~--f~~~y~-~Tig~~~~~k~i~----------~~~~-~~~v~l~iwDtaG~e~--- 63 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGI--FTKDYK-KTIGVDFLEKQIF----------LRQS-DEDVRLMLWDTAGQEE--- 63 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CCCCCEEEEEEEE----------ECCC-CEEEEEEEEECCCCCC---
T ss_conf 989999999988999999998496--898768-8556257887899----------8679-9799999997899701---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
-..+- -...|+||++|.|-|...-+. + +.++ .|
T Consensus 64 -~~~l~---~~~~~~a~~~ilvydvt~~~S-------------f------------~~l~-~w----------------- 96 (162)
T cd04106 64 -FDAIT---KAYYRGAQACILVFSTTDRES-------------F------------EAIE-SW----------------- 96 (162)
T ss_pred -CCCCH---HHHHHHHCCEEEEEECCCHHH-------------H------------HHHH-HH-----------------
T ss_conf -34152---456123031268840698899-------------9------------9999-99-----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
...++. . .. .-|+++|+||.|... +.....++.++++.+.+..++-+||
T Consensus 97 -------~~~~~~------~-----------~~------~~piilVgNK~DL~~-~r~V~~~e~~~~a~~~~~~~~E~SA 145 (162)
T cd04106 97 -------KEKVEA------E-----------CG------DIPMVLVQTKIDLLD-QAVITNEEAEALAKRLQLPLFRTSV 145 (162)
T ss_pred -------HHHHHH------H-----------CC------CCCEEEEECCHHHHH-CCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf -------999997------6-----------69------962999840544410-1778999999999986987999868
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
+....+
T Consensus 146 k~~~nV 151 (162)
T cd04106 146 KDDFNV 151 (162)
T ss_pred CCCCCH
T ss_conf 888298
No 172
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.93 E-value=0.00027 Score=48.74 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=50.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337-99768555877764218650233579998512235432
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
+||-++|-++||||+|.+...... =..+|. +||..+.- .+. .+++ ..++++.|.||--.-
T Consensus 1 iKi~llGd~~VGKTsli~r~~~~~--f~~~y~-~Ti~~~~~~~~~------------~~~~---~~~l~iwDt~G~e~~- 61 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK--FPTEYV-PTVFDNYSATVT------------VDGK---QVNLGLWDTAGQEEY- 61 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCCCCC-CEEEEEEEEEEE------------ECCE---EEEEEEEECCCCCCC-
T ss_conf 989999999966999999996299--998758-803466689999------------9999---999999989987102-
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 224663289999873037478850123
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
+.+-.. .+|+||++|.|-|..
T Consensus 62 ---~~~~~~---~~~~a~~~ilvydit 82 (171)
T cd00157 62 ---DRLRPL---SYPNTDVFLICFSVD 82 (171)
T ss_pred ---CCCHHH---HHHHCCEEEEEEECC
T ss_conf ---413223---444265899999689
No 173
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.93 E-value=0.00016 Score=50.34 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=85.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||-++|-++||||+|.+..+.. . =..+|. |.+|..+... . ..+++. ..+++.|.||-
T Consensus 1 ~fKIvllGd~~VGKTsli~r~~~~-~-f~~~y~-----pTi~~~~~k~------i-~~~~~~---~~l~iwDtaG~---- 59 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQG-I-FVEKYD-----PTIEDSYRKQ------V-EVDGQQ---CMLEILDTAGT---- 59 (164)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-----CCEEEEEEEE------E-EECCEE---EEEEECCCCCC----
T ss_conf 929999899997599999999709-2-886568-----8404689999------9-999999---99985147754----
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
.+-+.+-. ..+|+||++|.|-|..... + + +.++.-|++.
T Consensus 60 e~~~~l~~---~y~~~a~~~ilvydvt~~~-------S------f------------~~~~~~~~~i------------- 98 (164)
T cd04175 60 EQFTAMRD---LYMKNGQGFVLVYSITAQS-------T------F------------NDLQDLREQI------------- 98 (164)
T ss_pred HHHHHHHH---HHHCCCCEEEEEEECCCHH-------H------H------------HHHHHHHHHH-------------
T ss_conf 32456788---8735786899996078777-------8------9------------9999999999-------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
. . ... ...-|+++|+||+|..... ....+..+.++.+.+..++-+|
T Consensus 99 ------------~-----------------~-~~~---~~~~piilvgNK~DL~~~r-~V~~~~~~~~a~~~~~~~~E~S 144 (164)
T cd04175 99 ------------L-----------------R-VKD---TEDVPMILVGNKCDLEDER-VVGKEQGQNLARQWGCAFLETS 144 (164)
T ss_pred ------------H-----------------H-HCC---CCCCEEEEEECCCCCHHCC-CCCHHHHHHHHHHCCCEEEEEC
T ss_conf ------------9-----------------8-628---9996399852145722206-8999999999998599999966
Q ss_pred CHHHHHH
Q ss_conf 0024665
Q gi|254780226|r 242 AAIEAEI 248 (367)
Q Consensus 242 a~~E~ei 248 (367)
|+....+
T Consensus 145 Ak~~~nV 151 (164)
T cd04175 145 AKAKINV 151 (164)
T ss_pred CCCCCCH
T ss_conf 8988178
No 174
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.92 E-value=0.00036 Score=47.87 Aligned_cols=147 Identities=21% Similarity=0.344 Sum_probs=86.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE------EECCCHHHHHHHHHCCCCEEEEEEEEEEECCC
Q ss_conf 248675288878889999874048987366686744883379------97685558777642186502335799985122
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE------VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAG 76 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~------~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaG 76 (367)
+||-|+|-+.||||+|....+.. . =..+|. |.+|. +.+++ . ..+.+++.|+||
T Consensus 1 ~KvvllGd~~VGKTSli~rf~~~-~-F~~~y~-----~TiG~d~~~k~i~i~~------------~--~~v~l~iwDtaG 59 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKE-G-FGKSYK-----QTIGLDFFSKRVTLPG------------N--LNVTLQVWDIGG 59 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-----CCCCEEEEEEEEEECC------------C--CEEEEEEEECCC
T ss_conf 97999999997099999999749-8-988778-----8655788999999879------------9--469999996998
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 35432224663289999873037478850123454211345776732157889888876433222457777787520320
Q gi|254780226|r 77 LVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKS 156 (367)
Q Consensus 77 Lv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~ 156 (367)
- .....+-. .-+++++++|.|-|...-+. + +.++ .|-.
T Consensus 60 q----e~~~~~~~---~y~~~a~~~ilVYDitn~~S-------------F------------~~l~-~W~~--------- 97 (215)
T cd04109 60 Q----SIGGKMLD---KYIYGAHAVFLVYDVTNSQS-------------F------------ENLE-DWYS--------- 97 (215)
T ss_pred C----CCHHHHHH---HHHHHHCCEEEECCCCCHHH-------------H------------HHHH-HHHH---------
T ss_conf 5----00237899---99975151377414786789-------------9------------9899-9999---------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHC-CCHHEECCCHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 46777899999889988758741034431326777621023576410-10010034301110101346787788643698
Q gi|254780226|r 157 EEIVLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAK-PILYICNVSEHDCKKGNIYTEAVQRLASQQNA 235 (367)
Q Consensus 157 ~~~~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~K-P~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~ 235 (367)
. + +.. .... ..+ |+++|+||.|....+ ....++-+++|.+.+.
T Consensus 98 -----------~----i------~~~-----------~~~~---~~~~~iiLVGNK~DL~~~R-~Vs~ee~~~~A~~~g~ 141 (215)
T cd04109 98 -----------M----V------RKV-----------LKSS---ETQPLVVLVGNKTDLEHNR-TVKDDKHARFAQANGM 141 (215)
T ss_pred -----------H----H------HHH-----------HHCC---CCCCEEEEEEECCCHHHHC-CCCHHHHHHHHHHCCC
T ss_conf -----------9----9------998-----------5045---7785299997545428647-7699999999998299
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 4033210024665
Q gi|254780226|r 236 EMIIISAAIEAEI 248 (367)
Q Consensus 236 ~~i~isa~~E~ei 248 (367)
.++.+||+....+
T Consensus 142 ~f~E~SAktg~nV 154 (215)
T cd04109 142 ESCLVSAKTGDRV 154 (215)
T ss_pred EEEEEECCCCCCH
T ss_conf 8999838999498
No 175
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.92 E-value=0.00058 Score=46.50 Aligned_cols=151 Identities=20% Similarity=0.222 Sum_probs=82.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||=|+|-++||||+|++..+.. .=..+|. |.+|.-.... ... .++ .+.++++-|+||--.
T Consensus 2 KivlvGd~~VGKTsli~r~~~~--~f~~~y~-----~Tig~d~~~k-----~~~-v~~---~~~~l~iwDtaGqe~---- 61 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKD--VFDKNYK-----ATIGVDFEME-----RFE-ILG---VPFSLQLWDTAGQER---- 61 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHCC--CCCCCCC-----CCCCEEEEEE-----EEE-ECC---EEEEEEEEECCCCCC----
T ss_conf 8999998998989999999639--8899725-----6345058999-----999-999---999999998999974----
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
=+.+-. ...|+||++|.|-|...-.. .+. +. .|-.
T Consensus 62 f~~l~~---~y~r~a~~~ilvyDvt~~~S----------f~~-------~~---------~w~~---------------- 96 (170)
T cd04108 62 FKCIAS---TYYRGAQAIIIVFDLTDVAS----------LEH-------TR---------QWLE---------------- 96 (170)
T ss_pred CCCCHH---HHHCCCCEEEEEEECCCHHH----------HHH-------HH---------HHHH----------------
T ss_conf 664437---77327875899997898789----------999-------99---------9999----------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCC-HHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99998899887587410344313267776210235764101001003430111010-13467877886436984033210
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKG-NIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~-n~~~e~i~~l~~~~~~~~i~isa 242 (367)
. .+.. .-...-|+++|+||.|....+. ....+...+++.+.+..++-+||
T Consensus 97 ~-------~~~~----------------------~~~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~~a~~~~~~~~E~SA 147 (170)
T cd04108 97 D-------ALKE----------------------NDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSA 147 (170)
T ss_pred H-------HHHH----------------------CCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCEEEEECC
T ss_conf 9-------9985----------------------0899982999998413798755764489999999877987999855
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
+....+
T Consensus 148 k~g~nV 153 (170)
T cd04108 148 LSGENV 153 (170)
T ss_pred CCCCCH
T ss_conf 788187
No 176
>KOG0090 consensus
Probab=97.88 E-value=1.3e-05 Score=57.61 Aligned_cols=78 Identities=27% Similarity=0.472 Sum_probs=57.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.+=|+|+.++|||++|-.|+. .. ..--+|.|+||.|+-++-+. ..+++|+||-..
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~-gs---~~~TvtSiepn~a~~r~gs~-----------------~~~LVD~PGH~r---- 94 (238)
T KOG0090 40 AVLLVGLSDSGKTSLFTQLIT-GS---HRGTVTSIEPNEATYRLGSE-----------------NVTLVDLPGHSR---- 94 (238)
T ss_pred CEEEEECCCCCCEEEEEEHHC-CC---CCCEEEEECCCEEEEEECCC-----------------CEEEEECCCCHH----
T ss_conf 689993278983355420013-87---36703210466135763686-----------------238875799588----
Q ss_pred CCCCHHHHHHHHH---CCCEEEEEECCCC
Q ss_conf 4663289999873---0374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIR---EVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir---~aDalihVVdaf~ 109 (367)
|--+++...- ++-+|+.|||...
T Consensus 95 ---lR~kl~e~~~~~~~akaiVFVVDSa~ 120 (238)
T KOG0090 95 ---LRRKLLEYLKHNYSAKAIVFVVDSAT 120 (238)
T ss_pred ---HHHHHHHHCCCCCCCEEEEEEEECCC
T ss_conf ---99999987346552215999983322
No 177
>PTZ00132 GTP-binding nuclear protein; Provisional
Probab=97.88 E-value=0.00031 Score=48.34 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=86.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||=++|-++||||+|.+..+.. .- ..+|. .||..+.....+ ..+++ ..++++-|+|| .
T Consensus 6 ~~KIvllGd~~VGKTsLi~r~~~~-~F-~~~y~-pTig~d~~~~~~----------~~~~~---~i~l~IwDTaG----q 65 (209)
T PTZ00132 6 QFKLILVGDGGVGKTTFVKRHLTG-EF-EKKYI-ATLGVEVHPLKF----------YTNRG---KICFNVWDTAG----Q 65 (209)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHC-CC-CCCCC-CCCCEEEEEEEE----------EECCE---EEEEEEEECCC----C
T ss_conf 689999999996789999999719-96-99877-760279899999----------99999---99999998999----7
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
-+-++|-..+ .|+|+++|.|-|.+.-+. .+. ++ .|-+
T Consensus 66 e~f~sl~~~y---yr~a~~~ilVfDit~~~S----------F~~---------------l~-~W~~-------------- 102 (209)
T PTZ00132 66 EKFGGLRDGY---YIKGQCAIIMFDVTSRIT----------YKN---------------VP-NWHR-------------- 102 (209)
T ss_pred CCCCCCCCHH---HCCCCEEEEEECCCCHHH----------HHH---------------HH-HHHH--------------
T ss_conf 4455665144---248988999843788789----------999---------------99-9999--------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
. +. .. . ..-|+++|+||.|... .....+. .+++.+.+..++-+|
T Consensus 103 --e--------i~------~~------------~-----~~ipivLVGNK~DL~~--r~V~~~~-~~~a~~~~~~f~EtS 146 (209)
T PTZ00132 103 --D--------IT------RV------------C-----ENIPIVLVGNKVDVKD--RQVKAKQ-ITFHRKKNLQYYDIS 146 (209)
T ss_pred --H--------HH------HH------------C-----CCCCEEEEEECCCCCC--CCCCHHH-HHHHHHCCCEEEEEE
T ss_conf --9--------99------86------------8-----9987899976232241--3557999-999998799899972
Q ss_pred CHHHHHH
Q ss_conf 0024665
Q gi|254780226|r 242 AAIEAEI 248 (367)
Q Consensus 242 a~~E~ei 248 (367)
|+....+
T Consensus 147 AKtg~NV 153 (209)
T PTZ00132 147 AKSNYNF 153 (209)
T ss_pred CCCCCCH
T ss_conf 6899397
No 178
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.83 E-value=0.0004 Score=47.60 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=79.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||.|+|-++||||++++..+...= ..+|+ +|. |.-. . .-..++. +..+++.|.||-..
T Consensus 1 ~KivllGd~~VGKTsl~~Rf~~~~F--~~~~~-pt~----~~~~-~-------~~~vdg~---~~~l~i~DTaG~~~--- 59 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSY--VQLES-PEG----GRFK-K-------EVLVDGQ---SHLLLIRDEGGAPD--- 59 (158)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCC-CCC----CEEE-E-------EEEECCE---EEEEEEEECCCCCC---
T ss_conf 9999999699879999999980947--87444-664----4179-9-------9999999---99999995899834---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
.+ ..|.+||+|.|-|...-. + + +.+. .|
T Consensus 60 ------~~---~~~~ada~ilVydit~~~-------S------F------------~~v~-~~----------------- 87 (158)
T cd04103 60 ------AQ---FASWVDAVIFVFSLENEA-------S------F------------QTVY-NL----------------- 87 (158)
T ss_pred ------HH---HHCCCCEEEEEEECCCHH-------H------H------------HHHH-HH-----------------
T ss_conf ------33---321499899999889888-------9------9------------9999-99-----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCH-HHHHHHHHHHHHC-CCCCCCC
Q ss_conf 9999988998875874103443132677762102357641010010034301110101-3467877886436-9840332
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGN-IYTEAVQRLASQQ-NAEMIII 240 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n-~~~e~i~~l~~~~-~~~~i~i 240 (367)
...+.+.. -...-|+++|.||+|.+..+.. +..+..++++.+. +..++-+
T Consensus 88 -------~~~i~~~~---------------------~~~~ipiilvGnK~dl~~~~~r~V~~~e~~~~a~~~~~~~f~Et 139 (158)
T cd04103 88 -------YHQLSSYR---------------------NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYET 139 (158)
T ss_pred -------HHHHHHHC---------------------CCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHCCCCEEEEE
T ss_conf -------99999855---------------------97899689998770036577614799999999985699889990
Q ss_pred CCHHHH
Q ss_conf 100246
Q gi|254780226|r 241 SAAIEA 246 (367)
Q Consensus 241 sa~~E~ 246 (367)
||+...
T Consensus 140 SAk~~~ 145 (158)
T cd04103 140 CATYGL 145 (158)
T ss_pred ECCCCC
T ss_conf 179995
No 179
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.81 E-value=0.00064 Score=46.20 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=50.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337-99768555877764218650233579998512235432
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
+||-++|-++||||+|....... . =..+|. +||..+.. .+.+ ++ .+..+++.|.||--.
T Consensus 1 ~Kiv~vGd~~VGKTsli~rf~~~-~-f~~~y~-pTi~~~~~~~i~v------------~~---~~~~l~i~DTaG~e~-- 60 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAND-A-FPEEYV-PTVFDHYAVSVTV------------GG---KQYLLGLYDTAGQED-- 60 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CEEEEEEEEEEEE------------CC---EEEEEEEEECCCCCC--
T ss_conf 98999998998599999999629-8-998868-8575202279999------------99---999999997976403--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
=+.+ .-..+|+||++|.|-|...
T Consensus 61 --~~~~---~~~~~~~a~~~ilvydi~~ 83 (174)
T cd04135 61 --YDRL---RPLSYPMTDVFLICFSVVN 83 (174)
T ss_pred --CHHH---HHHHHCCCCEEEEEEECCC
T ss_conf --1556---5998557876789843797
No 180
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.79 E-value=0.0017 Score=43.40 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=50.1
Q ss_pred EEEEEECCCCCHHHHHHHH---HCCCCCCCCCC--CCCCCCCCEEEEECCCHHHHHHHHH---CCCCEEEEEEEEEEECC
Q ss_conf 4867528887888999987---40489873666--8674488337997685558777642---18650233579998512
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNAL---TRTASAQAANY--PFCTIEPNSGEVAVPDPRMHKLAEI---AESKDLVPTRMSFVDIA 75 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~al---T~~~~~~~~~y--pFtTi~pn~g~~~v~d~~~~~l~~~---~~~~~~~p~~i~~iDva 75 (367)
.|||+|-..+|||||--++ |+ +....+.- --|+.|.. |.++ .+-..+ .-+-.+-..++.|+|.|
T Consensus 1 Niai~gH~~~GKTtL~e~lL~~~g-~i~r~G~v~~g~t~~D~~------~eE~-~r~isi~~~~~~~~~~~~~~n~iDtP 72 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSG-AIRKLGSVDKGTTRTDTM------ELER-QRGITIFSAVASFQWEDTKVNLIDTP 72 (237)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-HHHHCCCEECCCCCCCCH------HHHH-HHCCEEEEEEEEEEECCEEEEEEECC
T ss_conf 989993899899999999999657-122266330683037854------9989-84870310589999899879998898
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2354322246632899998730374788501234
Q gi|254780226|r 76 GLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 76 GLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
|-.--.+ ....-+|-+|+-+.||||..
T Consensus 73 G~~dF~~-------e~~~al~~~D~av~Vv~a~~ 99 (237)
T cd04168 73 GHMDFIA-------EVERSLSVLDGAILVISAVE 99 (237)
T ss_pred CCHHHHH-------HHHHHHHHCCCEEEEEECCC
T ss_conf 8465666-------89889763481699996588
No 181
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.79 E-value=0.00091 Score=45.15 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=82.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
.||=++|-++||||+|....+.. .- ..+|. +||..+.....+. .++. ..++++-|.||--.
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~-~f-~~~~~-~Tig~~~~~~~~~----------~~~~---~v~l~iwDtaGqe~--- 61 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTG-EF-EKKYV-ATLGVEVHPLDFH----------TNRG---KIRFNVWDTAGQEK--- 61 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-CC-CCCCC-CCCCEEEEEEEEE----------ECCE---EEEEEEEECCCCHH---
T ss_conf 98999999998889999999839-99-99868-7325567999999----------9997---99999997578715---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
-+.+- -.-.|+||++|.|.|...-.. + +.+. +|-
T Consensus 62 -~~~l~---~~y~~~a~~~ilvyDvt~~~S-------------f------------~~v~-~w~---------------- 95 (166)
T cd00877 62 -FGGLR---DGYYIGGQCAIIMFDVTSRVT-------------Y------------KNVP-NWH---------------- 95 (166)
T ss_pred -HHHHH---HHHHCCCCEEEEECCCCCHHH-------------H------------HHHH-HHH----------------
T ss_conf -66687---887400657998437898889-------------9------------9999-999----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
..+. . .. ..-|+++|+||+|..... . .+...+++.+.+..++-+||
T Consensus 96 --------~~i~------~----~~-------------~~~piilVgNK~Dl~~~~--~-~~~~~~~~~~~~~~~~EtSA 141 (166)
T cd00877 96 --------RDLV------R----VC-------------GNIPIVLCGNKVDIKDRK--V-KAKQITFHRKKNLQYYEISA 141 (166)
T ss_pred --------HHHH------H----HC-------------CCCCEEEEEECCCCCCCC--C-CHHHHHHHHHCCCEEEEECC
T ss_conf --------9999------8----68-------------999899999862175036--6-79999999978998999845
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
+....+
T Consensus 142 k~~~nV 147 (166)
T cd00877 142 KSNYNF 147 (166)
T ss_pred CCCCCH
T ss_conf 899098
No 182
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.78 E-value=0.00011 Score=51.23 Aligned_cols=82 Identities=24% Similarity=0.302 Sum_probs=53.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||.++|.+|||||||.+++++. . ....|+-|...+-.+....++.+ ..++++.|+||...-.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~-~-~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~~~- 68 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD-E-FPEGYPPTIGNLDPAKTIEPYRR--------------NIKLQLWDTAGQEEYR- 68 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC-C-CCCCCCCCEEECCCCCEEECCCC--------------CEEEEEEECCCHHHHH-
T ss_conf 79999999999889999999647-6-76556761454043203622666--------------0026767679869999-
Q ss_pred CCCCCHHHHH-HHHHCCCEEEEEECCC
Q ss_conf 2466328999-9873037478850123
Q gi|254780226|r 83 KGEGLGNQFL-AHIREVDAIIHVLRCF 108 (367)
Q Consensus 83 ~G~GlGN~FL-~~ir~aDalihVVdaf 108 (367)
.+. .-.+.+++++.|+|..
T Consensus 69 -------~~~~~y~~~~~~~l~~~d~~ 88 (219)
T COG1100 69 -------SLRPEYYRGANGILIVYDST 88 (219)
T ss_pred -------HHHHHCCCCCCEEEEEEECC
T ss_conf -------98875043897899999762
No 183
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.78 E-value=0.00041 Score=47.49 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=53.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
|||-|+|-++||||+|.+...+. .=..+|. .|+..+...-.+. .++ .+.++++.|.||-=
T Consensus 1 iKivlvGd~~VGKTsLi~rf~~~--~F~~~y~-~Tig~d~~~k~i~----------v~~---~~v~l~iwDtaGqe---- 60 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEG--EFDEDYI-QTLGVNFMEKTIS----------IRG---TEITFSIWDLGGQR---- 60 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC--CCCCCCC-CCCEEEEEEEEEE----------ECC---EEEEEEEEECCCCH----
T ss_conf 98999999998989999999539--9999988-8733898999999----------999---99999998677648----
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 246632899998730374788501234
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
+=+.+ .-...|+|+++|.|-|.+.
T Consensus 61 ~f~~~---~~~y~~~a~~~ilvfDit~ 84 (182)
T cd04128 61 EFINM---LPLVCNDAVAILFMFDLTR 84 (182)
T ss_pred HHHHH---HHHHHCCCCEEEEEEECCC
T ss_conf 78999---9998647878999997899
No 184
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.77 E-value=0.0013 Score=44.21 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=51.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337-99768555877764218650233579998512235432
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
+||-++|-++||||+|.+..+.. . =..+|. +|+....- .+.+ +++ ..++++.|.||--.
T Consensus 2 fKivlvGd~~VGKTsli~rf~~~-~-f~~~y~-pTi~~~~~k~i~i------------~~~---~~~l~iwDtaG~e~-- 61 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN-V-FIESYD-PTIEDSYRKQVEI------------DGR---QCDLEILDTAGTEQ-- 61 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCCEEEEEEEE------------CCE---EEEEEEEECCCCCC--
T ss_conf 19999899997799999999619-3-898658-8333159999999------------999---99999982788623--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
=+.+-.. .+|+||++|.|-|...
T Consensus 62 --~~~~~~~---~~~~a~~~ilvydvt~ 84 (168)
T cd04177 62 --FTAMREL---YIKSGQGFLLVYSVTS 84 (168)
T ss_pred --CCCCHHH---HHCCCCEEEEECCCCC
T ss_conf --3345154---5126866798536898
No 185
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=97.76 E-value=0.00027 Score=48.77 Aligned_cols=80 Identities=33% Similarity=0.490 Sum_probs=54.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC------CCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCC
Q ss_conf 248675288878889999874048987366686------74488337997685558777642186502335799985122
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPF------CTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAG 76 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypF------tTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaG 76 (367)
|-||+.|==-=|||||..+|||.+..-+..-|= =||| .|.++.|=|+. ...++||||||
T Consensus 1 ~~~at~GHvDHGKT~L~k~LTgi~stsa~~lPeEkqKRG~tID--LGfAy~~l~~~-------------n~~l~~iDvPG 65 (627)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIDSTSADRLPEEKQKRGMTID--LGFAYLPLPDI-------------NKRLGFIDVPG 65 (627)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEE--CCCEECCCCCC-------------CCCCEEEECCC
T ss_conf 9687312445047999998506430123127741025766246--04200367777-------------71334785597
Q ss_pred CCCCCCCCCCCHHHHHH----HHHCCCEEEEEECCC
Q ss_conf 35432224663289999----873037478850123
Q gi|254780226|r 77 LVRGASKGEGLGNQFLA----HIREVDAIIHVLRCF 108 (367)
Q Consensus 77 Lv~gA~~G~GlGN~FL~----~ir~aDalihVVdaf 108 (367)
| .+||+ -+.-+|+.+.||||-
T Consensus 66 -----H------e~fl~n~lAg~~~i~~alLvVda~ 90 (627)
T TIGR00475 66 -----H------EKFLSNALAGIGGIDAALLVVDAD 90 (627)
T ss_pred -----H------HHHHHHHHHHHHHHHHHEEEECCC
T ss_conf -----3------899999866756540100354157
No 186
>KOG2423 consensus
Probab=97.74 E-value=2.3e-05 Score=55.94 Aligned_cols=61 Identities=34% Similarity=0.615 Sum_probs=39.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+-+|.||+||+|||++.|.|-. ..+ |..-|-.|..+|= +-..-. -.|-|||.||.|+-.+
T Consensus 308 ISVGfiGYPNvGKSSiINTLR~-KkV-------CkvAPIpGETKVW--------QYItLm----krIfLIDcPGvVyps~ 367 (572)
T KOG2423 308 ISVGFIGYPNVGKSSIINTLRK-KKV-------CKVAPIPGETKVW--------QYITLM----KRIFLIDCPGVVYPSS 367 (572)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCC-------CCCCCCCCCCHHH--------HHHHHH----HCEEEECCCCCCCCCC
T ss_conf 2566624888755888888753-453-------1125888840388--------999887----2136744797248888
Q ss_pred C
Q ss_conf 2
Q gi|254780226|r 83 K 83 (367)
Q Consensus 83 ~ 83 (367)
.
T Consensus 368 d 368 (572)
T KOG2423 368 D 368 (572)
T ss_pred C
T ss_conf 7
No 187
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.70 E-value=0.00091 Score=45.17 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=51.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|-++||||+|....+... =..+| .|.++..+...- ..+++ ++++++.|.||--.
T Consensus 2 ~Ki~liGd~~VGKTsli~r~~~~~--F~~~y-----~pTi~~~~~~~i-------~~~~~---~v~l~iwDtaG~e~--- 61 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQ--FPEVY-----VPTVFENYVADI-------EVDGK---QVELALWDTAGQED--- 61 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCCCC-----CCCEEEEEEEEE-------EECCE---EEEEEEEECCCCCC---
T ss_conf 099999989966999999997098--99984-----784368999999-------99999---99999997776613---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 24663289999873037478850123
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
-..+-. ...|+||++|.|-|..
T Consensus 62 -~~~~~~---~~~~~a~~~ilvydi~ 83 (175)
T cd01870 62 -YDRLRP---LSYPDTDVILMCFSID 83 (175)
T ss_pred -CCCCHH---HHHCCCCEEEEEEECC
T ss_conf -232404---4314887899998659
No 188
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=97.67 E-value=0.00061 Score=46.33 Aligned_cols=88 Identities=20% Similarity=0.238 Sum_probs=57.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
++.||++|-+.+|||||-||+-|...-+-+.-| +|++..- ....+|...++-. +.+.|.||.-.-+
T Consensus 35 ~lnIavtGesG~GkSsfINalRg~g~e~~~aA~-------tGvvetT-----~~~~~Y~hp~~pn--V~lwDLPG~gt~~ 100 (375)
T pfam05049 35 PLKIAVTGDSGNGKSSFINALRGIGHEEDGSAP-------TGVVETT-----MKRTPYSHPHFPN--VVLWDLPGLGATN 100 (375)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC-------CCCEEEC-----CCCCCCCCCCCCC--EEEECCCCCCCCC
T ss_conf 247998548998678999987478987777687-------6876632-----6755678999998--0796289999899
Q ss_pred CCCCCCHHHHHHH--HHCCCEEEEEECC
Q ss_conf 2246632899998--7303747885012
Q gi|254780226|r 82 SKGEGLGNQFLAH--IREVDAIIHVLRC 107 (367)
Q Consensus 82 ~~G~GlGN~FL~~--ir~aDalihVVda 107 (367)
. --+..|.. ..++|.+|.|.-.
T Consensus 101 f----~~~~Yl~~~~f~~yDfFiiiss~ 124 (375)
T pfam05049 101 F----TVETYLEEMKFSEYDFFIIISSE 124 (375)
T ss_pred C----CHHHHHHHCCCCCCCEEEEEECC
T ss_conf 8----98999987485647789999677
No 189
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.67 E-value=0.00079 Score=45.59 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=51.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|-++||||+|+...+.. .- ..+|. |.++..+... . ..++ ...++++.|.||--.
T Consensus 2 iKivllGd~~VGKTsL~~rf~~~-~F-~~~~~-----pTi~~~~~~~------i-~v~~---~~~~l~iwDTaG~e~--- 61 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSN-KF-PTDYI-----PTVFDNFSAN------V-SVDG---NTVNLGLWDTAGQED--- 61 (176)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC-CC-CCCCC-----CCEEEEEEEE------E-EECC---EEEEEEEEECCCCCC---
T ss_conf 79999899997799999999659-89-99867-----8535899999------9-9999---899999997999765---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECC
Q ss_conf 2466328999987303747885012
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRC 107 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVda 107 (367)
-+.+-..+ .|+||++|.|-|.
T Consensus 62 -~~~l~~~~---y~~a~~~ilvydi 82 (176)
T cd04133 62 -YNRLRPLS---YRGADVFVLAFSL 82 (176)
T ss_pred -CCHHHHHH---HCCCCEEEEEEEC
T ss_conf -42468987---2678757999978
No 190
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=97.60 E-value=0.00063 Score=46.24 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=54.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||-++|-++||||||...+....- ..+++-+|...+.....+. .++. ...+++.|.+|--.-.
T Consensus 1 KivvvG~~~vGKTSLi~r~~~~~f--~~~~~~~~~~~~~~~~~~~----------~~~~---~~~l~i~Dt~g~~~~~-- 63 (118)
T pfam08477 1 KVVVIGDKGSGKSSLLSQLVGGEF--PPEIPEEIQGDTLAVDTLE----------VDGD---TELLHIWDFGGREELK-- 63 (118)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCCEEEEEEEE----------ECCC---EEEEEEEECCCCHHHH--
T ss_conf 999999899789999999983988--8766678777768889999----------9992---8999999899967776--
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
...-..+++||++|.|.|.+.
T Consensus 64 -----~~~~~~~~~~d~~ilvydit~ 84 (118)
T pfam08477 64 -----FEHIIFMKTADAILLVYDLTD 84 (118)
T ss_pred -----HHHHHHCCCCCEEEEEEECCC
T ss_conf -----666542258746789997998
No 191
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.55 E-value=0.00071 Score=45.88 Aligned_cols=93 Identities=17% Similarity=0.292 Sum_probs=51.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC-CCCCCEEEEECCCH---HHHHHHHHCCCCEEEEEEEEEEECCCC
Q ss_conf 82486752888788899998740489873666867-44883379976855---587776421865023357999851223
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFC-TIEPNSGEVAVPDP---RMHKLAEIAESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFt-Ti~pn~g~~~v~d~---~~~~l~~~~~~~~~~p~~i~~iDvaGL 77 (367)
++||=+||=++||||+|+.+...+.. ...|.|+ +-.|.++.+.-..- -+.+.....++ ..+++++-|.||
T Consensus 2 t~KiVlvGDs~VGKTsLl~~~~~n~~--~~~~~~~~~~~pTv~~~~~~~~~~~~~~~~~~~vdg---~~v~L~iWDTAG- 75 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKT--LTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDG---VSVSLRLWDTFG- 75 (195)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECC---EEEEEEEEECCC-
T ss_conf 77999987899898999977874787--655656667588663333313444430221142189---599999997899-
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 5432224663289999873037478850123
Q gi|254780226|r 78 VRGASKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 78 v~gA~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
.++ +- .++ .-+++|+++.+-|..
T Consensus 76 ---~~~-~~--r~~--~y~~~~~~ll~fdv~ 98 (195)
T cd01873 76 ---DHD-KD--RRF--AYGRSDVVLLCFSIA 98 (195)
T ss_pred ---CHH-HC--CCC--CCCCCCEEEEEEECC
T ss_conf ---620-01--214--356888999999669
No 192
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.50 E-value=0.00094 Score=45.09 Aligned_cols=96 Identities=22% Similarity=0.313 Sum_probs=50.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCC-CCCC-----CCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCC
Q ss_conf 2486752888788899998740489873-6668-----674488337997685558777642186502335799985122
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQA-ANYP-----FCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAG 76 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~-~~yp-----FtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaG 76 (367)
+-++++|--..|||||-.+|++...... ...| =.||+.-.....++-+.. ...... ..+-..++.|+|.||
T Consensus 1 ~NV~iiGHVDhGKTTL~~~L~~~~~~~~~D~~~eE~eRGITi~~g~~~~~~~~~~~--~~~~~~-~~~~~~~i~~IDtPG 77 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKH--LRELIN-PGEENLQITLVDCPG 77 (192)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCHHHHCCHHHHHCCCCEEEEEEEEEECCCCC--CCCCCC-CCCCCEEEEEEECCC
T ss_conf 98999976178999999999833350122135889977971671001378514422--112323-467745899987798
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 35432224663289999873037478850123
Q gi|254780226|r 77 LVRGASKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 77 Lv~gA~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
=..- -.....-++.||+-+.||||.
T Consensus 78 H~df-------~~~~~~g~~~~D~ailvVda~ 102 (192)
T cd01889 78 HASL-------IRTIIGGAQIIDLMLLVVDAT 102 (192)
T ss_pred CHHH-------HHHHHHHHHHCCCCEEEEECC
T ss_conf 3889-------988888874326527999878
No 193
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=97.47 E-value=0.0002 Score=49.62 Aligned_cols=98 Identities=24% Similarity=0.265 Sum_probs=57.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCC--CCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCC---
Q ss_conf 824867528887888999987404898736668--674488337997685558777642186502335799985122---
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYP--FCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAG--- 76 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~yp--FtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaG--- 76 (367)
..+++++|.|++||||+++.+++........+| .+|.+-....+.+.-..+. -.. ... ...++++|.||
T Consensus 3 ~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~-~~w-~~~~~~~d~~G~~~ 76 (186)
T TIGR00231 3 DIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTIT----GAT-FQW-GYKFNLLDTPGLHR 76 (186)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEE----EEE-EEC-CEEEEEEECCCCHH
T ss_conf 505899734776604555445410120010232333200000011345580234----343-102-42789862577113
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCEEEEEE
Q ss_conf 35432224663289999873037478850
Q gi|254780226|r 77 LVRGASKGEGLGNQFLAHIREVDAIIHVL 105 (367)
Q Consensus 77 Lv~gA~~G~GlGN~FL~~ir~aDalihVV 105 (367)
-.....-.+....+....++.+|..++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (186)
T TIGR00231 77 QEDYDALRRLYYPEVLSSLEVLDLVILVL 105 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55554454332234454443333333222
No 194
>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=97.42 E-value=0.00028 Score=48.60 Aligned_cols=90 Identities=28% Similarity=0.343 Sum_probs=67.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEE-EEEEECCCCCCC-C
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357-999851223543-2
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTR-MSFVDIAGLVRG-A 81 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~-i~~iDvaGLv~g-A 81 (367)
.++++|.||+||||+.|.+.+....-+...|-||...-.|...-+. .+ +-++|+||+-.. .
T Consensus 2 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~d~pg~~~~~~ 64 (278)
T TIGR00436 2 FVAILGRPNVGKSTLLNKLLGQKISITSPKPQTTRNRISGILTTGA-----------------SQNIIFIDTPGFHEPEK 64 (278)
T ss_pred CEEECCCCCCCHHHHHHHHHCCCHHCCCCCCHHHHHHHHEEEECCC-----------------CCCEEEEECCCCCCHHH
T ss_conf 1121157765336677766324101002310123433200122366-----------------55157862587651245
Q ss_pred C-CCCCCHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 2-2466328999987303747885012345
Q gi|254780226|r 82 S-KGEGLGNQFLAHIREVDAIIHVLRCFKD 110 (367)
Q Consensus 82 ~-~G~GlGN~FL~~ir~aDalihVVdaf~~ 110 (367)
| -++-+-...-..+...|.++.+++....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (278)
T TIGR00436 65 HKLGELLNKEARSALGGVDLLLFVVDSDEW 94 (278)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 677888888887531232268898633445
No 195
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.39 E-value=0.00075 Score=45.75 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=20.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 24867528887888999987404
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~ 25 (367)
|.|+++|==..||||+.-+||+.
T Consensus 1 vNi~iiGHVDhGKSTLi~~L~g~ 23 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred CEEEEEEEECCCHHHHHHHHHCC
T ss_conf 96999988578799999997085
No 196
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.38 E-value=0.0032 Score=41.46 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=51.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHH--HHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776--4218650233579998512235432
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLA--EIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~--~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.|||+|-+.+||||+.-++--.+ ..-+.+=..-+-|.-.=+-|.++-...+ .-.-+-.+-..+|.|+|.||-+--.
T Consensus 1 Ni~iigH~~aGKTtL~E~lL~~~--g~i~~~G~V~~g~t~~D~~~~E~~RgiSi~s~~~~~~w~~~~inliDTPG~~DF~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYAT--GAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEEECCCCCHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCEEEEEECCEEEEEEECCCCHHHH
T ss_conf 98999089999899999999966--9966576545897357787889867967513557888899799998698975799
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
. +....+|-+|+-+.||||..
T Consensus 79 ~-------e~~~aL~v~D~Av~Vida~~ 99 (268)
T cd04170 79 G-------ETRAALRAADAALVVVSAQS 99 (268)
T ss_pred H-------HHHHHHCCCCEEEEEECCCC
T ss_conf 9-------99998404783999941875
No 197
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.37 E-value=0.0028 Score=41.93 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=48.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE-EECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 8675288878889999874048987366686744883379-976855587776421865023357999851223543222
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE-VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~-~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
|-++|-++||||+|+...+... =..+|. .||..+... +. ++++ ..++++.|.||--.
T Consensus 1 ivllGd~~VGKTsli~r~~~~~--f~~~y~-~Ti~~~~~~~~~------------~~~~---~~~l~i~DtaG~e~---- 58 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA--FPEDYV-PTVFENYSADVE------------VDGK---PVELGLWDTAGQED---- 58 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCC--CCCCCC-CCEEEEEEEEEE------------ECCE---EEEEEEEECCCCCC----
T ss_conf 5998978975999999995398--999857-850578999999------------9999---99999994898703----
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 4663289999873037478850123
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
=+.|-..+ .|+||++|.|-|..
T Consensus 59 ~~~l~~~~---~~~a~~~ilvydvt 80 (174)
T smart00174 59 YDRLRPLS---YPDTDVFLICFSVD 80 (174)
T ss_pred CCCCCHHH---CCCCCEEEEEEECC
T ss_conf 45450011---04886899997589
No 198
>TIGR00650 MG442 GTP-binding conserved hypothetical protein; InterPro: IPR005289 This is a GTP-binding domain, that was found in proteins from various families (Ras GTPase superfamily, HSR1-related GTP-binding protein), which perform different functions.; GO: 0005525 GTP binding.
Probab=97.33 E-value=0.00026 Score=48.81 Aligned_cols=18 Identities=61% Similarity=0.951 Sum_probs=16.5
Q ss_pred EECCCCCHH-------------HHHHHHHCC
Q ss_conf 528887888-------------999987404
Q gi|254780226|r 8 IGLPNVGKS-------------TLFNALTRT 25 (367)
Q Consensus 8 vG~pn~GKS-------------T~f~alT~~ 25 (367)
+|.|||||| +++|+|-.-
T Consensus 1 ~G~PNVGKSkieYktaievaaGsliN~L~~k 31 (123)
T TIGR00650 1 IGVPNVGKSKIEYKTAIEVAAGSLINLLLNK 31 (123)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9868987642102345567778899998621
No 199
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.30 E-value=0.001 Score=44.89 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=63.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
+|.+=|+|.+.+|||+++|||=+....+++.-|-||-.++ ++..+++.. .+.+.|.||+=.|-
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~------------~~~~~~~~~-----~l~lwDtPG~gdg~ 101 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITT------------RLRLSYDGE-----NLVLWDTPGLGDGK 101 (296)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHH------------HHHHHCCCC-----CEEEECCCCCCCCH
T ss_conf 6158974377776889999997026734210466887015------------677412665-----24884378855320
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 224663289999873037478850123
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
-+.+-.--..++-+...|.++-++++-
T Consensus 102 ~~D~~~r~~~~d~l~~~DLvL~l~~~~ 128 (296)
T COG3596 102 DKDAEHRQLYRDYLPKLDLVLWLIKAD 128 (296)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 221899999998863224799961477
No 200
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.16 E-value=0.0054 Score=39.94 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=52.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|-++||||+|.+...... =..+|| +|++...-.+. .+++ ..++++.|.||--.
T Consensus 1 lKiv~vGd~~VGKTsli~r~~~~~--F~~~~~-~t~~~~~~~~~------------~~~~---~v~l~i~DtaG~e~--- 59 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEE--FPENVP-RVLPEITIPAD------------VTPE---RVPTTIVDTSSRPQ--- 59 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CCCCCEEEEEE------------ECCE---EEEEEEEECCCCCC---
T ss_conf 989999999989999999998497--888777-63456899999------------8890---99999998998723---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 24663289999873037478850123
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
-+.+ ....+|+||+++.|-|..
T Consensus 60 -~~~~---~~~~~~~a~~~ilvydit 81 (166)
T cd01893 60 -DRAN---LAAEIRKANVICLVYSVD 81 (166)
T ss_pred -CCHH---HHHHHCCCCEEEEEECCC
T ss_conf -0245---798736898899997089
No 201
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.12 E-value=0.0041 Score=40.73 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=52.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
|+||-++|=++||||+|....+.. . =..+|. +||..+... .+ ..++ .+.++++.|.||--.-.
T Consensus 1 siKivlvGd~~VGKTsli~r~~~~-~-f~~~~~-~Ti~~~~~~-~i----------~~~~---~~v~l~iwDtaGqe~~~ 63 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTN-A-FPGEYI-PTVFDNYSA-NV----------MVDG---KPVNLGLWDTAGQEDYD 63 (174)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CEEEEEEEE-EE----------EECC---EEEEEEEECCCCCCCCH
T ss_conf 969999899998699999999739-9-999868-837887679-99----------9999---99999998699972406
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 224663289999873037478850123
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
.+-. ...|++|++|.|-|..
T Consensus 64 ----~~~~---~~~~~a~~~ilvydi~ 83 (174)
T cd01871 64 ----RLRP---LSYPQTDVFLICFSLV 83 (174)
T ss_pred ----HHHH---HHHHHCCEEEEEEECC
T ss_conf ----7889---9874066899998679
No 202
>KOG0075 consensus
Probab=97.09 E-value=0.00043 Score=47.39 Aligned_cols=78 Identities=24% Similarity=0.383 Sum_probs=50.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE--EECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 248675288878889999874048987366686744883379--976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE--VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~--~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
|.+-+||+-|+|||||.|.+.... -..|- =|.+|. -+|. ++ .++|.+-|++|
T Consensus 21 mel~lvGLq~sGKtt~Vnvia~g~---~~edm----iptvGfnmrkvt-----------kg----nvtik~wD~gG---- 74 (186)
T KOG0075 21 MELSLVGLQNSGKTTLVNVIARGQ---YLEDM----IPTVGFNMRKVT-----------KG----NVTIKLWDLGG---- 74 (186)
T ss_pred EEEEEEEECCCCCCEEEEEEECCC---CHHHH----CCCCCCEEEEEC-----------CC----CEEEEEEECCC----
T ss_conf 158888532478525888875067---45664----302463268831-----------58----36999983699----
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 22246632899998730374788501234
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.-.-+.+..+| -|.++||++||||++
T Consensus 75 q~rfrsmWery---cR~v~aivY~VDaad 100 (186)
T KOG0075 75 QPRFRSMWERY---CRGVSAIVYVVDAAD 100 (186)
T ss_pred CCCHHHHHHHH---HCCCCEEEEEEECCC
T ss_conf 76088899998---603868999961678
No 203
>KOG2485 consensus
Probab=97.02 E-value=0.0011 Score=44.61 Aligned_cols=66 Identities=27% Similarity=0.463 Sum_probs=41.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHC-----CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCC
Q ss_conf 2486752888788899998740-----48987366686744883379976855587776421865023357999851223
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTR-----TASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~-----~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGL 77 (367)
..+=+||-||||||++.||+-. ...+.++++|=.|+. -.+.+++-+. | + +.++|.||.
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~-V~~~iri~~r----------p----~--vy~iDTPGi 206 (335)
T KOG2485 144 YNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRR-VSERIRISHR----------P----P--VYLIDTPGI 206 (335)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCEEE-EHHHEEECCC----------C----C--EEEECCCCC
T ss_conf 269997389888088999999887653000010688885223-1212574368----------9----6--588668875
Q ss_pred CCCCCCCC
Q ss_conf 54322246
Q gi|254780226|r 78 VRGASKGE 85 (367)
Q Consensus 78 v~gA~~G~ 85 (367)
.+-...+.
T Consensus 207 l~P~I~~~ 214 (335)
T KOG2485 207 LVPSIVDV 214 (335)
T ss_pred CCCCCCCH
T ss_conf 79887797
No 204
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.99 E-value=0.029 Score=35.05 Aligned_cols=112 Identities=22% Similarity=0.382 Sum_probs=68.6
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG 84 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G 84 (367)
+-|.|-=.-||+||+-++-.+ .++.-.+.-|-.++|.-.|.-+. --++ -+|.|+|.|| |
T Consensus 275 VTIMGHVDHGKTsLLD~iR~t---~Va~~EaGGITQhIGAy~V~~~~------~~~~-----~~ITFlDTPG-----H-- 333 (770)
T CHL00189 275 VTILGHVDHGKTTLLDAIRKT---NIAQKEAGGITQKIGAYEVEVPY------KDQN-----QKIVFLDTPG-----H-- 333 (770)
T ss_pred EEEECCCCCCHHHHHHHHHCC---CCCCCCCCCCCCEECEEEEEECC------CCCC-----CEEEEECCCC-----H--
T ss_conf 998577257720378888528---85134567655503529997515------7889-----7589955994-----6--
Q ss_pred CCCHHHHHHHH-----HCCCEEEEEECCCCCCCC--------CCC----------CCCCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 66328999987-----303747885012345421--------134----------57767-3215788988887643322
Q gi|254780226|r 85 EGLGNQFLAHI-----REVDAIIHVLRCFKDENI--------IHV----------EGRID-PINDIETIETELMLSDLER 140 (367)
Q Consensus 85 ~GlGN~FL~~i-----r~aDalihVVdaf~~~~v--------~~~----------~g~~D-P~~Di~~i~~EL~l~dle~ 140 (367)
+-+..+ +-+|..|.||-| |+.| .|. -..+| |-.+.+-+..||.-. +.
T Consensus 334 -----eAFt~MRaRGA~vTDIvILVVAA--DDGVmPQTiEAI~hakaA~VPiIVAINKiDkp~an~~rVk~eL~e~--gl 404 (770)
T CHL00189 334 -----EAFSSMRSRGANVTDIAILIVAA--DDGVKPQTIEAINHIQAANVPIIVAINKIDKENANIDRVKQELSKY--NL 404 (770)
T ss_pred -----HHHHHHHHCCCCCCCEEEEEEEC--CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC--CC
T ss_conf -----88999986278666679999965--7885672799999998769988999877458998857899999986--95
Q ss_pred HHHHHH
Q ss_conf 245777
Q gi|254780226|r 141 LERLFE 146 (367)
Q Consensus 141 lek~~~ 146 (367)
+--.|.
T Consensus 405 i~EewG 410 (770)
T CHL00189 405 ISEKWG 410 (770)
T ss_pred CHHHCC
T ss_conf 522237
No 205
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=96.97 E-value=0.0055 Score=39.89 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=53.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE--EECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 248675288878889999874048987366686744883379--976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE--VAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~--~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
+||=++|=+.||||+|++.++... -..+|+ .||-..+.+ ..++.+ ....+. ..++|-|+||--.-
T Consensus 1 vKIlllGDsgVGKTSL~~~~~~~~--f~~~~~-~TiG~~v~~k~~~~~~~--------~~~~k~--~~l~lWDtaGqery 67 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQ--VLGRPS-WTVGCSVDVKHHTYKEG--------TPEEKT--FFVELWDVGGSESV 67 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCCCCC-CCEEEEEEEEEEEECCC--------CCCCCE--EEEEEEECCCCHHH
T ss_conf 989999999989999999998398--888888-85036789999993378--------767838--99999989987757
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 22246632899998730374788501234
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
+.+-. .-.|++|++|.|-|.+.
T Consensus 68 ----~sl~~---~yYr~a~gvILVyDvTn 89 (202)
T cd04102 68 ----KSTRA---VFYNQVNGIILVHDLTN 89 (202)
T ss_pred ----HHHHH---HHHCCCCEEEEEEECCC
T ss_conf ----76789---97588989999998949
No 206
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=96.94 E-value=0.0082 Score=38.73 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=52.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
++||-++|-++||||+|....+.. . =..+|. .||..+.... -..+++ ++.+++.|.||--.
T Consensus 1 svKvv~lGd~~VGKTsli~r~~~~-~-f~~~y~-pti~~~~~~~-----------~~~~~~---~v~l~iwDTaG~e~-- 61 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTN-K-FPSEYV-PTVFDNYAVT-----------VMIGGE---PYTLGLFDTAGQED-- 61 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCEEEEEEEE-----------EEECCE---EEEEEEEECCCCCC--
T ss_conf 979999899995889999999649-8-999867-8634789999-----------999999---99999998999745--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 224663289999873037478850123
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
=+.+-. ..+|++|++|.|-|..
T Consensus 62 --~~~l~~---~~~~~~~~~ilvydv~ 83 (175)
T cd01874 62 --YDRLRP---LSYPQTDVFLVCFSVV 83 (175)
T ss_pred --CHHHHH---HHHHCCCEEEEEEECC
T ss_conf --124658---8771388889996379
No 207
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=96.91 E-value=0.01 Score=38.11 Aligned_cols=111 Identities=23% Similarity=0.374 Sum_probs=71.6
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG 84 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G 84 (367)
+-+.|-=.-|||||+-++..+ .++.-.+.-|-.|+|.-.|+ +++ -+|.|+|.|| |
T Consensus 120 VtimGHVDHGKTsLLD~iR~t---~V~~~EaGGITQhIGA~~v~----------~~~-----~~itFiDTPG-----H-- 174 (610)
T PRK12312 120 VTIMGHVDHGKTTLLDTIRKT---NVVASEAGGITQHIGAYQVE----------YQG-----KKITFIDTPG-----H-- 174 (610)
T ss_pred EEEECCCCCCHHHHHHHHHCC---CCCCCCCCCCCCEECEEEEE----------ECC-----CEEEEECCCC-----H--
T ss_conf 999677257722588998548---64134677664400449998----------679-----7689972896-----7--
Q ss_pred CCCHHHHHHHHH-----CCCEEEEEECCCCC------CCCCCC----------CCCCC-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 663289999873-----03747885012345------421134----------57767-321578898888764332224
Q gi|254780226|r 85 EGLGNQFLAHIR-----EVDAIIHVLRCFKD------ENIIHV----------EGRID-PINDIETIETELMLSDLERLE 142 (367)
Q Consensus 85 ~GlGN~FL~~ir-----~aDalihVVdaf~~------~~v~~~----------~g~~D-P~~Di~~i~~EL~l~dle~le 142 (367)
+-.+.+| -+|..|.||+|=+. +.+.|. -+.+| |-.|.+-+..||.- ++.+-
T Consensus 175 -----eAFt~mR~RGa~vtDI~iLVVaaddGv~pQTiEaI~~ak~a~vpiiVAiNKiDkp~a~~~~v~~~L~~--~g~~~ 247 (610)
T PRK12312 175 -----EAFTEMRARGAKVTDIVILVVAADDGVKPQTEEAIDHAKAANVPIIVFVNKMDKPNANPDRIKNELSK--YDLVP 247 (610)
T ss_pred -----HHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH--HCCCH
T ss_conf -----98999997077654579999975789774269999999975998899850446788987899999987--07667
Q ss_pred HHHHH
Q ss_conf 57777
Q gi|254780226|r 143 RLFEK 147 (367)
Q Consensus 143 k~~~k 147 (367)
-.|..
T Consensus 248 E~~GG 252 (610)
T PRK12312 248 EEWGG 252 (610)
T ss_pred HHHCC
T ss_conf 88579
No 208
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=96.86 E-value=0.014 Score=37.24 Aligned_cols=140 Identities=17% Similarity=0.188 Sum_probs=78.1
Q ss_pred EECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 52888788899998740489873666867448833799768555877764218650233579998512235432224663
Q gi|254780226|r 8 IGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKGEGL 87 (367)
Q Consensus 8 vG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~Gl 87 (367)
||=++||||||.+..... .= ..+| .|.+|+-..+ ..+... -..+++++-|.||-- +=++|
T Consensus 1 vGD~gVGKTsli~R~~~~-~F-~~~y-----~pTiGvd~~~--------~~~~~~-~~~i~l~iWDTAGqE----~f~sl 60 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG-EF-EKKY-----VATLGVEVHP--------LVFHTN-RGPIRFNVWDTAGQE----KFGGL 60 (200)
T ss_pred CCCCCCCHHHHHHHHHCC-CC-CCCC-----CCCEEEEEEE--------EEEEEC-CEEEEEEEEECCCCC----CCCCC
T ss_conf 989887899999999409-99-9997-----8871489899--------999989-989999999898870----00110
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 28999987303747885012345421134577673215788988887643322245777778752032046777899999
Q gi|254780226|r 88 GNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQSIIS 167 (367)
Q Consensus 88 GN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~~~l~ 167 (367)
-.. ..|+|++.|.|-|.+.-+. + +.+. .|
T Consensus 61 ~~~---yyr~a~~~IlvfDvt~~~S-------F------------------~~l~-~W---------------------- 89 (200)
T smart00176 61 RDG---YYIQGQCAIIMFDVTARVT-------Y------------------KNVP-NW---------------------- 89 (200)
T ss_pred CHH---HCCCCCEEEEEEECCCHHH-------H------------------HHHH-HH----------------------
T ss_conf 265---5057878899963587789-------9------------------9899-99----------------------
Q ss_pred HHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 8899887587410344313267776210235764101001003430111010134678778864369840332100246
Q gi|254780226|r 168 SSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAAIEA 246 (367)
Q Consensus 168 ~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~E~ 246 (367)
-.+..... ..-|+++|+||.|.... ....+. ..++.+++..++-+||+...
T Consensus 90 -------------------~~~l~~~~------~~ipiiLvGNK~DL~~r--~V~~e~-~~~a~~~~~~y~EtSAKt~~ 140 (200)
T smart00176 90 -------------------HRDLVRVC------ENIPIVLCGNKVDVKDR--KVKAKS-ITFHRKKNLQYYDISAKSNY 140 (200)
T ss_pred -------------------HHHHHHHC------CCCCEEEEEECCCCCCC--CCCHHH-HHHHHHCCCCEEEEECCCCC
T ss_conf -------------------99999857------99988999988757404--365999-99999879978983004696
No 209
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=96.85 E-value=0.011 Score=37.96 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=50.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|-++||||+|....... . =..+|. |..+..+-.. . ..++ .+.++++.|.||--
T Consensus 1 iKvvlvGd~~VGKTsli~r~~~~-~-F~~~y~-----pT~~~~~~~~------i-~~~~---~~v~l~iwDtaG~e---- 59 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTN-G-YPTEYV-----PTAFDNFSVV------V-LVDG---KPVRLQLCDTAGQD---- 59 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-----CCEEEEEEEE------E-EECC---EEEEEEEEECCCCC----
T ss_conf 98999998997889999999619-9-999857-----8358999999------9-9999---99999999899873----
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 24663289999873037478850123
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
+-..+-..+ .|++|++|.|-|..
T Consensus 60 ~~~~l~~~~---~~~a~~~ilvydv~ 82 (173)
T cd04130 60 EFDKLRPLC---YPDTDVFLLCFSVV 82 (173)
T ss_pred CCCHHHHHH---HCCCCEEEEEEECC
T ss_conf 443456766---13787899999659
No 210
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.85 E-value=0.041 Score=34.05 Aligned_cols=110 Identities=22% Similarity=0.407 Sum_probs=68.9
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG 84 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G 84 (367)
+-+.|-=.-||+||+-++-.+ .++...+.-|--++|...|.- .++ -.|.|+|.|| |+
T Consensus 344 vt~mghvdhgkt~lld~~r~~---~v~~~e~ggitq~iga~~v~~---------~~~-----~~itf~dtpg-----h~- 400 (839)
T PRK05306 344 VTIMGHVDHGKTSLLDAIRKT---KVAAGEAGGITQHIGAYQVET---------ENG-----KKITFLDTPG-----HE- 400 (839)
T ss_pred EEEECCCCCCHHHHHHHHHCC---CCCCCCCCCCCCEEEEEEEEE---------CCC-----CEEEEECCCC-----HH-
T ss_conf 988577467731489998628---753556787552223499995---------699-----8799855885-----58-
Q ss_pred CCCHHHHHHHH-----HCCCEEEEEECCCCCCCC--------CCCC----------CCCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 66328999987-----303747885012345421--------1345----------7767-3215788988887643322
Q gi|254780226|r 85 EGLGNQFLAHI-----REVDAIIHVLRCFKDENI--------IHVE----------GRID-PINDIETIETELMLSDLER 140 (367)
Q Consensus 85 ~GlGN~FL~~i-----r~aDalihVVdaf~~~~v--------~~~~----------g~~D-P~~Di~~i~~EL~l~dle~ 140 (367)
.| ..+ .=+|..|.||-| |+.+ .|.. +.+| |--|.+-+..||.- ++.
T Consensus 401 -----af-~~mr~rga~~tdi~ilvvaa--ddgv~pqt~eai~~~~~a~vp~ivaink~d~~~a~~~~v~~~l~~--~~~ 470 (839)
T PRK05306 401 -----AF-TAMRARGAQVTDIVVLVVAA--DDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELTE--YGL 470 (839)
T ss_pred -----HH-HHHHHCCCCCCCEEEEEEEC--CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHH--CCC
T ss_conf -----89-99986357654369999977--777567789999999974998899974046788988999999998--498
Q ss_pred HHHHHHH
Q ss_conf 2457777
Q gi|254780226|r 141 LERLFEK 147 (367)
Q Consensus 141 lek~~~k 147 (367)
+--.|.-
T Consensus 471 ~~e~~gg 477 (839)
T PRK05306 471 VPEEWGG 477 (839)
T ss_pred CHHHCCC
T ss_conf 6454289
No 211
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=96.81 E-value=0.01 Score=38.03 Aligned_cols=79 Identities=25% Similarity=0.357 Sum_probs=54.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-++|=++||||+|.+..+... |+ .-.|.+|.... .++..+.++++.|.|| ..
T Consensus 1 lKivllGd~~VGKTsl~~rf~~~~------F~--~~~~Tig~~~~-------------~k~~~~~~l~IwDTaG----qE 55 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERR------FK--DTVSTVGGAFY-------------LKQWGPYNISIWDTAG----RE 55 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC------CC--CCCCCCCEEEE-------------EEECCEEEEEEEECCC----CC
T ss_conf 989999999988999999997298------99--98887136899-------------9876478899994798----62
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 246632899998730374788501234
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
+=+.|...| .|+|+++|.|-|...
T Consensus 56 ~f~sl~~~y---~r~a~~~ilvyDit~ 79 (220)
T cd04126 56 QFHGLGSMY---CRGAAAVILTYDVSN 79 (220)
T ss_pred CCCCCHHHH---HCCCCEEEEEEECCC
T ss_conf 243326888---567988999997989
No 212
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.77 E-value=0.013 Score=37.48 Aligned_cols=83 Identities=18% Similarity=0.140 Sum_probs=50.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||-++|-++||||+|++..+... =..+|. .| +|.-+.... ...++ ...++++.|.||-- +
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~--F~~~~~-pT----i~~~~~~~~------~~~~~---~~v~l~iwDtaG~e----~ 61 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK--FPEEYV-PT----VFENYVTNI------QGPNG---KIIELALWDTAGQE----E 61 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CC----EEEEEEEEE------EEECC---EEEEEEEEECCCCC----C
T ss_conf 89999949976999999996398--999758-96----647999999------95499---89999999699971----1
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-..+...+ .|+||++|.|-|...
T Consensus 62 ~~~l~~~~---~~~a~~~ilvydit~ 84 (187)
T cd04132 62 YDRLRPLS---YPDVDVLLICYAVDN 84 (187)
T ss_pred CCCCHHHH---HHHCCEEEEEECCCC
T ss_conf 05343445---300348889503687
No 213
>KOG0074 consensus
Probab=96.72 E-value=0.011 Score=37.76 Aligned_cols=78 Identities=23% Similarity=0.381 Sum_probs=46.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE--EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 24867528887888999987404898736668674488337--9976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG--EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g--~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
++|++.|+-|+||+||+..|. +.++ .+ +-|.-| +..|. +.+ . -.+.+-||.|
T Consensus 18 irilllGldnAGKTT~LKqL~-sED~--~h-----ltpT~GFn~k~v~----------~~g--~--f~LnvwDiGG---- 71 (185)
T KOG0074 18 IRILLLGLDNAGKTTFLKQLK-SEDP--RH-----LTPTNGFNTKKVE----------YDG--T--FHLNVWDIGG---- 71 (185)
T ss_pred EEEEEEECCCCCCHHHHHHHC-CCCH--HH-----CCCCCCCCEEEEE----------ECC--C--EEEEEEECCC----
T ss_conf 789997227776130888871-3783--33-----1566885247876----------247--0--7888885278----
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 222466328999987303747885012345
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKD 110 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~ 110 (367)
...=++ -.=+--.+.|.||+|+| |.|
T Consensus 72 qr~IRp---yWsNYyenvd~lIyVID-S~D 97 (185)
T KOG0074 72 QRGIRP---YWSNYYENVDGLIYVID-STD 97 (185)
T ss_pred CCCCCH---HHHHHHHCCCEEEEEEE-CCC
T ss_conf 665544---56655530554899984-773
No 214
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=96.66 E-value=0.019 Score=36.24 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=50.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.+||-++|=+.||||+|....+... =..+| .|.++..+... -..+++ ++.+++.|.||--.-
T Consensus 3 ~~KivlvGd~~VGKTsli~r~~~~~--F~~~y-----~pti~~~~~~~-------~~i~~~---~v~l~iwDtaG~e~~- 64 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNA--FPKEY-----IPTVFDNYSAQ-------TAVDGR---TVSLNLWDTAGQEEY- 64 (191)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC--CCCCC-----CCCCCEEEEEE-------EEECCE---EEEEEEEECCCCCCH-
T ss_conf 1899999999989999999997299--99864-----66210004678-------999999---999999858887003-
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 224663289999873037478850123
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
+.+-. ...|+||++|.|-|.+
T Consensus 65 ---~~~~~---~~~~~a~~~ilvfdvt 85 (191)
T cd01875 65 ---DRLRT---LSYPQTNVFIICFSIA 85 (191)
T ss_pred ---HHHHH---HHHCCCCEEEEEEECC
T ss_conf ---56778---7744786899998579
No 215
>KOG0070 consensus
Probab=96.65 E-value=0.0067 Score=39.34 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=52.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.|+|=++|+-|+||||+..-+-. .|+-+- -.||--|+-.+.++ +.++++-|+.|-
T Consensus 17 e~~IlmvGLD~AGKTTILyklk~---~E~vtt-vPTiGfnVE~v~yk-----------------n~~f~vWDvGGq---- 71 (181)
T KOG0070 17 EMRILMVGLDAAGKTTILYKLKL---GEIVTT-VPTIGFNVETVEYK-----------------NISFTVWDVGGQ---- 71 (181)
T ss_pred EEEEEEEECCCCCCCEEEEECCC---CCCCCC-CCCCCCCEEEEEEC-----------------CEEEEEEECCCC----
T ss_conf 67999996168986015675025---874147-78645313699986-----------------618999815887----
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2246632899998730374788501234
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.+ +..-.-.-.+++++||.|||.++
T Consensus 72 ~k---~R~lW~~Y~~nt~~lIfVvDS~D 96 (181)
T KOG0070 72 EK---LRPLWKHYFQNTQGLIFVVDSSD 96 (181)
T ss_pred CC---CCCCHHHHCCCCCEEEEEEECCC
T ss_conf 35---45313532037727999981773
No 216
>KOG0078 consensus
Probab=96.62 E-value=0.027 Score=35.23 Aligned_cols=144 Identities=20% Similarity=0.225 Sum_probs=89.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE------EECCCHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf 8248675288878889999874048987366686744883379------9768555877764218650233579998512
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGE------VAVPDPRMHKLAEIAESKDLVPTRMSFVDIA 75 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~------~~v~d~~~~~l~~~~~~~~~~p~~i~~iDva 75 (367)
.+|+=++|-++||||.+.-..... + -+.+|.+ .+|+ +.++ + ..+.+|+.|.|
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~--~--f~~~~~s---TiGIDFk~kti~l~------------g---~~i~lQiWDta 69 (207)
T KOG0078 12 LFKLLLIGDSGVGKTCLLLRFSDD--S--FNTSFIS---TIGIDFKIKTIELD------------G---KKIKLQIWDTA 69 (207)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHC--C--CCCCCCC---EEEEEEEEEEEEEC------------C---EEEEEEEEECC
T ss_conf 899999778987655766654406--6--7677651---58788788899838------------9---08999999724
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 23543222466328999987303747885012345421134577673215788988887643322245777778752032
Q gi|254780226|r 76 GLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHK 155 (367)
Q Consensus 76 GLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~ 155 (367)
| +.++ .+-+=+-.|.|+.++.|+|...... .+.+.+ |-+
T Consensus 70 G------Qerf-~ti~~sYyrgA~gi~LvyDitne~S-------------------------feni~~-W~~-------- 108 (207)
T KOG0078 70 G------QERF-RTITTAYYRGAMGILLVYDITNEKS-------------------------FENIRN-WIK-------- 108 (207)
T ss_pred C------CHHH-HHHHHHHHHHCCEEEEEEECCCHHH-------------------------HHHHHH-HHH--------
T ss_conf 3------0567-8899999865482499998452577-------------------------777999-999--------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 04677789999988998875874103443132677762102357641010010034301110101346787788643698
Q gi|254780226|r 156 SEEIVLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNA 235 (367)
Q Consensus 156 ~~~~~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~ 235 (367)
.+++.. ++ .=|.++|.||+|.... .....++-+++|.+.+.
T Consensus 109 ----------------~I~e~a---------~~-------------~v~~~LvGNK~D~~~~-R~V~~e~ge~lA~e~G~ 149 (207)
T KOG0078 109 ----------------NIDEHA---------SD-------------DVVKILVGNKCDLEEK-RQVSKERGEALAREYGI 149 (207)
T ss_pred ----------------HHHHHC---------CC-------------CCCEEEEECCCCCCCC-CCCCHHHHHHHHHHHCC
T ss_conf ----------------998637---------88-------------8748985114121013-33567999999998498
Q ss_pred CCCCCCCHHHHH
Q ss_conf 403321002466
Q gi|254780226|r 236 EMIIISAAIEAE 247 (367)
Q Consensus 236 ~~i~isa~~E~e 247 (367)
.+.-.||+....
T Consensus 150 ~F~EtSAk~~~N 161 (207)
T KOG0078 150 KFFETSAKTNFN 161 (207)
T ss_pred EEEECCCCCCCC
T ss_conf 279713367998
No 217
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=96.49 E-value=0.016 Score=36.70 Aligned_cols=82 Identities=20% Similarity=0.175 Sum_probs=51.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 4867528887888999987404898-736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASA-QAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~-~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
|+=|.|++.+|||+.=+.+-.+-.+ ++. |==+|++++...++... . ..+++.|.||=.
T Consensus 1 KiLLMG~~~sGKTSi~~vIF~~~~p~dT~-~L~~T~~ve~~~v~~~~--------------~--l~l~iwD~pGq~---- 59 (230)
T pfam04670 1 KVLLMGLRGSGKSSMRSIIFSNYSPRDTL-RLGATIDVEQSHVRFLG--------------N--LTLNLWDCPGQD---- 59 (230)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCHHHHC-CCCCCCCEEEEEEECCC--------------C--CEEEEEECCCCH----
T ss_conf 97875689998777699986799821412-02577776778774168--------------7--368999769835----
Q ss_pred CCCCCHHHH----HHHHHCCCEEEEEECCC
Q ss_conf 246632899----99873037478850123
Q gi|254780226|r 83 KGEGLGNQF----LAHIREVDAIIHVLRCF 108 (367)
Q Consensus 83 ~G~GlGN~F----L~~ir~aDalihVVdaf 108 (367)
.=+.|.| =.-.++|.|||+|+|+-
T Consensus 60 --~f~e~~~~~~~e~if~~v~~lIyV~D~q 87 (230)
T pfam04670 60 --DFMENYLTRQKEHIFSNVGVLIYVFDVE 87 (230)
T ss_pred --HHHHHHCCCCHHHHHHCCCEEEEEEECC
T ss_conf --3544120022354764478899999688
No 218
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=96.45 E-value=0.0094 Score=38.32 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=51.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||-+||..++||||||++|-+. ++. |-=|- .+-+- + =+.||.|| -==+
T Consensus 2 r~~f~G~~gCGKTTL~q~L~g~---~~~-YKKTQ-----AvE~~------------------~--k~~IDTPG---EY~e 49 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE---EIK-YKKTQ-----AVEYK------------------D--KEAIDTPG---EYVE 49 (144)
T ss_pred EEEEEECCCCCHHHHHHHCCCC---CCC-EEEEE-----EEEEC------------------C--CCCCCCCC---CCCC
T ss_conf 1788715888744354311687---321-02334-----45425------------------8--88655985---0015
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 46632899998730374788501234542
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDEN 112 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~ 112 (367)
.|++=...|--.++||.|+.|-+|-+..+
T Consensus 50 nr~~Y~AL~vtaaDAd~i~lV~~a~~~~~ 78 (144)
T TIGR02528 50 NRRYYSALIVTAADADVIALVQSATDEES 78 (144)
T ss_pred CCCHHHHHHHHHHCCEEEEEEECCCCCCC
T ss_conf 75237888888721023667735776422
No 219
>pfam04548 AIG1 AIG1 family. Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
Probab=96.44 E-value=0.026 Score=35.35 Aligned_cols=83 Identities=17% Similarity=0.150 Sum_probs=48.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC--CCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 248675288878889999874048987366686--744883379976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPF--CTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypF--tTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
|+|=|+|++.+|||+.=|.+-|- .+=....+. .|-....+...+ ++ -+|.++|.|||-..
T Consensus 1 LrivLlGktG~GKSstgNtILG~-~~F~s~~~~~~vT~~c~~~~~~~------------~g-----r~v~ViDTPgl~~~ 62 (200)
T pfam04548 1 LRIVLVGKTGNGKSATGNSILGR-KAFESKLRAQGVTKTCQLVSRTW------------DG-----RIINVIDTPGLFDL 62 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEEEEEE------------CC-----EEEEEEECCCCCCC
T ss_conf 98999799998436557661797-53357898888741368999998------------99-----68999978663576
Q ss_pred CCCCCCCHHHHHHHHHC--------CCEEEEEECC
Q ss_conf 22246632899998730--------3747885012
Q gi|254780226|r 81 ASKGEGLGNQFLAHIRE--------VDAIIHVLRC 107 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~--------aDalihVVda 107 (367)
.... .+....|.+ -+|++.|++.
T Consensus 63 ~~~~----~~~~~ei~~~~~l~~pGpHa~LLVi~~ 93 (200)
T pfam04548 63 SVSN----DFISKEIIRCLLLAEPGPHAVLLVLSL 93 (200)
T ss_pred CCCH----HHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 7786----999999999998558998579999866
No 220
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.40 E-value=0.077 Score=32.18 Aligned_cols=32 Identities=34% Similarity=0.608 Sum_probs=25.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|.-.+||||++++++|.. .|..|.+.+.
T Consensus 34 ~~liGpnGaGKSTL~~~i~Gl~------------~p~~G~I~~~ 65 (255)
T PRK11300 34 VSLIGPNGAGKTTVFNCLTGFY------------KPTGGTILLD 65 (255)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 9999899964999999996798------------8986089999
No 221
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.37 E-value=0.016 Score=36.78 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=52.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHH---H-HH-------HHCCCCEEEEEEEEEE
Q ss_conf 48675288878889999874048987366686744883379976855587---7-76-------4218650233579998
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMH---K-LA-------EIAESKDLVPTRMSFV 72 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~---~-l~-------~~~~~~~~~p~~i~~i 72 (367)
-++++|---.|||||..+|...... +.. .. ....+...+-|.+.+ + .+ -.+...+...-.+.++
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~-~~~--~~--~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlI 76 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHD-LTP--SG--KDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNII 76 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-HHH--HC--CCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEE
T ss_conf 5999827898989999999997344-555--40--444211357516466542035586145999982566750578778
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 5122354322246632899998730374788501234
Q gi|254780226|r 73 DIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 73 DvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
|.||-+- .+.+....+|-||+.+.||||.+
T Consensus 77 DTPGH~d-------F~~ev~~al~~~DgailVVDa~e 106 (213)
T cd04167 77 DTPGHVN-------FMDEVAAALRLSDGVVLVVDVVE 106 (213)
T ss_pred ECCCCHH-------HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 8987241-------79999988863776799998788
No 222
>PRK13695 putative NTPase; Provisional
Probab=96.30 E-value=0.0034 Score=41.33 Aligned_cols=24 Identities=38% Similarity=0.729 Sum_probs=22.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 982486752888788899998740
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~ 24 (367)
|.|||+|.|.|.+||||++..+..
T Consensus 2 ~~~kI~iTG~PGvGKTTli~Kv~~ 25 (174)
T PRK13695 2 AALRIGITGMPGVGKTTLVLKIAE 25 (174)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 842999878999889999999999
No 223
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.29 E-value=0.039 Score=34.16 Aligned_cols=109 Identities=22% Similarity=0.281 Sum_probs=61.6
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCC---------------CCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEE
Q ss_conf 8675288878889999874048987366686---------------7448833799768555877764218650233579
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPF---------------CTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRM 69 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypF---------------tTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i 69 (367)
++|+.-=-.||||+-..+-.... -+...-. -||..+...+ .|+.+.-..-.+
T Consensus 10 f~IiAHIDhGKSTLaDrlL~~tg-~i~~~~~~~q~lD~m~~ErERGITIka~~v~~------------~y~~~~g~~y~l 76 (601)
T PRK05433 10 FSIIAHIDHGKSTLADRLIELTG-TLSEREMKAQVLDSMDLERERGITIKAQAVRL------------NYKAKDGETYQL 76 (601)
T ss_pred EEEEEECCCCHHHHHHHHHHHCC-CCCCCCCHHHCCCCHHHHHHCCCEEEEEEEEE------------EEECCCCCEEEE
T ss_conf 89999437888889999999709-97744323331454155765583697867999------------988489967999
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCC----------------CCCCCCCC-CCHHHHHHHHH
Q ss_conf 99851223543222466328999987303747885012345421----------------13457767-32157889888
Q gi|254780226|r 70 SFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKDENI----------------IHVEGRID-PINDIETIETE 132 (367)
Q Consensus 70 ~~iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v----------------~~~~g~~D-P~~Di~~i~~E 132 (367)
.|+|.||=|--.+ ++=.-+|-||.-+.||||+..-.. ..+-+.+| |-.|++.+..|
T Consensus 77 NLIDTPGHVDF~~-------EVsRSL~aceGalLlVDa~qGVqaQT~an~~~A~~~~L~iIpviNKIDlp~Ad~e~v~~q 149 (601)
T PRK05433 77 NLIDTPGHVDFSY-------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQE 149 (601)
T ss_pred EEECCCCCCCCCE-------EEEEEHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf 9854898566450-------455603340725999976878560069999999987996577786146888998999999
Q ss_pred H
Q ss_conf 8
Q gi|254780226|r 133 L 133 (367)
Q Consensus 133 L 133 (367)
|
T Consensus 150 i 150 (601)
T PRK05433 150 I 150 (601)
T ss_pred H
T ss_conf 9
No 224
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.29 E-value=0.015 Score=37.03 Aligned_cols=94 Identities=26% Similarity=0.344 Sum_probs=51.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCC-----CCCCCCCEEEEEC-----CC-HHHH------HHHHHCCCCEEE
Q ss_conf 24867528887888999987404898736668-----6744883379976-----85-5587------776421865023
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYP-----FCTIEPNSGEVAV-----PD-PRMH------KLAEIAESKDLV 65 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~yp-----FtTi~pn~g~~~v-----~d-~~~~------~l~~~~~~~~~~ 65 (367)
+.||.+|-=-.|||||-.|||+. .. ..+| =.||+ .|.+.. ++ +..+ .+..|.......
T Consensus 9 vNIgtiGHVDHGKTTLv~aLTg~-~t--dr~~eE~~RGiTI~--LG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (410)
T PRK04000 9 VNIGMVGHVDHGKTTLVQALTGV-WT--DTHSEELKRGITIR--LGYADATIYKCPNCEGPEAYTTEPTCPKCGSETELL 83 (410)
T ss_pred CEEEEEEEECCCHHHHHHHHHCC-CC--CCCHHHHHCCCCCC--CCCCCEEHHCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 26999965178699999887397-54--23887886488121--051010012054555444135302334445554433
Q ss_pred EEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 35799985122354322246632899998730374788501234
Q gi|254780226|r 66 PTRMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 66 p~~i~~iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-.+.++|+|| |+ -+-..-++=+.++|+-|.||+|.+
T Consensus 84 -r~is~VD~PG-----He--~fi~nMi~Gas~~D~alLVVaA~e 119 (410)
T PRK04000 84 -RRVSFVDAPG-----HE--TLMATMLSGAALMDGAVLVIAANE 119 (410)
T ss_pred -CEEEEEECCC-----HH--HHHHHHHHHHCCCCEEEEEEECCC
T ss_conf -1699997988-----79--999999840212667999986577
No 225
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=96.27 E-value=0.0028 Score=41.89 Aligned_cols=22 Identities=45% Similarity=0.690 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHC
Q ss_conf 2486752888788899998740
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~ 24 (367)
..+||.|.|.+|||||.++++.
T Consensus 39 ~~vG~TG~PGaGKSTl~~~l~~ 60 (333)
T TIGR00750 39 HVVGITGVPGAGKSTLVEKLIM 60 (333)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7876646888857779999989
No 226
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=96.23 E-value=0.032 Score=34.72 Aligned_cols=82 Identities=24% Similarity=0.252 Sum_probs=51.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
-||-++|-++||||+|++..... . =..+| .|.++..++..- ..+++ +.++++.|.||--.
T Consensus 2 ~KivllGd~~VGKTsLi~r~~~~-~-f~~~y-----~pTi~~~~~~~i-------~v~~~---~v~l~iwDTaG~e~--- 61 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLG-E-FPEEY-----HPTVFENYVTDC-------RVDGK---PVQLALWDTAGQEE--- 61 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC-C-CCCCC-----CCCEEEEEEEEE-------EECCE---EEEEEEEECCCCCC---
T ss_conf 19999998997689999999829-8-99987-----886678989999-------99999---99999997888703---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 24663289999873037478850123
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
-+.+-.. ..++||++|.|-|..
T Consensus 62 -~~~~~~~---~~~~a~~~ilvydi~ 83 (187)
T cd04129 62 -YERLRPL---SYSKAHVILIGFAVD 83 (187)
T ss_pred -CCCCCCC---EECCCCEEEEECCCC
T ss_conf -4546041---233885899970269
No 227
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.19 E-value=0.053 Score=33.26 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=49.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||=+||-++||||+|++..+.. .- ..+| .|.++.-+... - ..+++ +.++++-|.||--
T Consensus 2 ~KivlvGd~~VGKTsLi~r~~~~-~F-~~~y-----~pTi~~~~~~~------~-~v~~~---~v~l~iwDTaGqe---- 60 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKD-CY-PETY-----VPTVFENYTAS------F-EIDEQ---RIELSLWDTSGSP---- 60 (178)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC-CC-CCCC-----CCCEEEEEEEE------E-EECCE---EEEEEEEECCCCH----
T ss_conf 09999999997789999999639-99-9985-----78568888999------9-99999---9999999689874----
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 24663289999873037478850123
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
+=+.+-.. -.|++|++|.|-|..
T Consensus 61 ~~~~l~~~---~y~~a~~~ilvydit 83 (178)
T cd04131 61 YYDNVRPL---CYPDSDAVLICFDIS 83 (178)
T ss_pred HHCCHHHH---HHCCCCEEEEEEECC
T ss_conf 21103667---734687899997379
No 228
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.15 E-value=0.035 Score=34.52 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=51.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE----CCC---HHHHHHHHHCC---CCEEEEEEEEEEE
Q ss_conf 4867528887888999987404898736668674488337997----685---55877764218---6502335799985
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVA----VPD---PRMHKLAEIAE---SKDLVPTRMSFVD 73 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~----v~d---~~~~~l~~~~~---~~~~~p~~i~~iD 73 (367)
.|||+|-..+|||||--|+--.+ ..-+.+ |.+. +-| ....+-..+.. +-.+-..+|.|+|
T Consensus 1 Niai~gH~gaGKTtL~EalL~~a--g~i~r~--------G~v~~g~tv~D~~~eE~~R~isi~~~~~~~~w~~~~inliD 70 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYT--GRIHKI--------GEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIID 70 (270)
T ss_pred CEEEEECCCCCHHHHHHHHHHHC--CCCCCC--------CEECCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEE
T ss_conf 98999689999889999999866--873558--------15538975566848898768707336689998998999986
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 122354322246632899998730374788501234
Q gi|254780226|r 74 IAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 74 vaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.||-.--. .+....+|-+|+-+.||||..
T Consensus 71 TPG~~DF~-------~e~~~aL~~~D~AviVv~a~~ 99 (270)
T cd01886 71 TPGHVDFT-------IEVERSLRVLDGAVAVFDAVA 99 (270)
T ss_pred CCCCHHHH-------HHHHHHHHHHCEEEEEEECCC
T ss_conf 96967889-------999999877555999984676
No 229
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=96.15 E-value=0.072 Score=32.36 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=49.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||-+||=++||||+|+...+... =..+| .|.++.-+... -.++++ ++++++-|.||--.-
T Consensus 2 ~KiVlvGD~~VGKTsLl~~f~~~~--F~~~y-----~pTi~~~~~~~-------~~vd~~---~v~L~iWDTAGqE~y-- 62 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--YPGSY-----VPTVFENYTAS-------FEIDKR---RIELNMWDTSGSSYY-- 62 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCCCC-----CCCEEEEEEEE-------EEECCE---EEEEEEECCCCCCHH--
T ss_conf 099998989989899999996399--99984-----78458778999-------999999---999999768885034--
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 24663289999873037478850123
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
+.+-. .-.|+||++|.|-|..
T Consensus 63 --~~lr~---~yyr~a~~~llvfdit 83 (222)
T cd04173 63 --DNVRP---LAYPDSDAVLICFDIS 83 (222)
T ss_pred --HHHHH---HHCCCCCEEEEEEECC
T ss_conf --55678---7503698999998389
No 230
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.14 E-value=0.031 Score=34.83 Aligned_cols=90 Identities=22% Similarity=0.323 Sum_probs=49.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCC-C--CCCCCCCCCEEEEECCCHHHHHH----H-HHCCCCEEEEEEEEEEEC
Q ss_conf 24867528887888999987404898736-6--68674488337997685558777----6-421865023357999851
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAA-N--YPFCTIEPNSGEVAVPDPRMHKL----A-EIAESKDLVPTRMSFVDI 74 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~-~--ypFtTi~pn~g~~~v~d~~~~~l----~-~~~~~~~~~p~~i~~iDv 74 (367)
+.||++|--..||||+-.+++... .+.. . ..+.++|- .+.+|-.-. + -.+... ...+.++|.
T Consensus 3 ~Ni~iiGHVDhGKTTL~~~l~~~~-~~~~~~~~~~~~~~D~------~~~EreRGiTI~~~~~~~~~~---~~~~~~IDt 72 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVL-AKKGGAKFKKYDEIDK------APEEKARGITINTAHVEYETA---NRHYAHVDC 72 (195)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHH-HHHCCCCCCCCHHCCC------CHHHHCCCCCCCCEEEEEECC---CEEEEECCC
T ss_conf 799999605886989999999988-6634444112001005------466650588614418999608---816996268
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 22354322246632899998730374788501234
Q gi|254780226|r 75 AGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 75 aGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
||=.. ......+-++.||+.+.||||.+
T Consensus 73 PGH~d-------F~~~~i~g~~~~D~aiLVVdA~e 100 (195)
T cd01884 73 PGHAD-------YIKNMITGAAQMDGAILVVSATD 100 (195)
T ss_pred CCHHH-------HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 96077-------88899863511362689985277
No 231
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.14 E-value=0.033 Score=34.66 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=50.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 98248675288878889999874048987366686744883379976855587776421865023357999851223543
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
|.+||-+||=++||||+|+...+... || .+..|.++.-+... -.++++ .+.+++-|.||--.
T Consensus 12 ~~~KiVlVGD~~VGKTsLl~~~~~~~------F~-~~y~pTv~~~~~~~-------i~v~~~---~v~L~lWDTAGqE~- 73 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC------YP-ETYVPTVFENYTAG-------LETEEQ---RVELSLWDTSGSPY- 73 (232)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHCC------CC-CCCCCCEEEEEEEE-------EEECCE---EEEEEEEECCCCCC-
T ss_conf 58899999989989999999997398------99-98588368888999-------999999---99999983899701-
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 2224663289999873037478850123
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
=+.+-. .-.++||++|.|-|..
T Consensus 74 ---y~~lr~---~yY~~a~~~ll~Fdvt 95 (232)
T cd04174 74 ---YDNVRP---LCYSDSDAVLLCFDIS 95 (232)
T ss_pred ---CCHHHH---HHHCCCCEEEEEEECC
T ss_conf ---003679---9740687899999689
No 232
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.14 E-value=0.009 Score=38.47 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=27.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 24867528887888999987404898736668674488337997
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVA 46 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~ 46 (367)
=++||||.-.+|||||++.++|...+..+ -.++.+|.-+.+
T Consensus 30 ~riGLvG~NGaGKSTLLkilaG~~~~~~G---~i~~~~~~~v~~ 70 (530)
T COG0488 30 ERIGLVGRNGAGKSTLLKILAGELEPDSG---EVTRPKGLRVGY 70 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCC---EEEECCCCEEEE
T ss_conf 88999899989889999998299778896---378569807998
No 233
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.13 E-value=0.012 Score=37.61 Aligned_cols=45 Identities=27% Similarity=0.387 Sum_probs=30.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCC-----CCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736-----668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAA-----NYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~-----~ypFtTi~pn~g~~~v~d 49 (367)
+.|+|...+||||+++.++|...+..+ +-|-+-..|.+|++.-.+
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEECCC
T ss_conf 99989997889999999968787777559988821578998779992667
No 234
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains; InterPro: IPR005690 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts. The long precursor of the 86K protein is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation . The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=96.10 E-value=0.0082 Score=38.74 Aligned_cols=88 Identities=20% Similarity=0.397 Sum_probs=63.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
|+.|=+.||..||||...|++-+....-+..|-..|.. |.| ...+.+| ++|.++|.|||-+.|
T Consensus 124 Sl~IlVLGK~GVGKSATINSI~~e~~~s~dAf~~~T~~-------V~~-----i~G~V~G-----v~i~viDTPGL~~s~ 186 (772)
T TIGR00993 124 SLNILVLGKSGVGKSATINSIFGEVKASIDAFGLGTTS-------VQE-----IEGLVDG-----VKIRVIDTPGLKSSA 186 (772)
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCEEEEEECCCCCCCE-------EEE-----EEEEEEE-----EEEEEEECCCCCHHH
T ss_conf 11434551568772010111123500120101466644-------776-----6667710-----799997578875555
Q ss_pred CCCCCCHHHHHHHHHCC------CEEEEEECC
Q ss_conf 22466328999987303------747885012
Q gi|254780226|r 82 SKGEGLGNQFLAHIREV------DAIIHVLRC 107 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~a------DalihVVda 107 (367)
.+ ..--.|.|+-+... |.+++|=|-
T Consensus 187 ~d-Qs~N~K~L~sVK~~~KK~PPDIVLY~DRL 217 (772)
T TIGR00993 187 SD-QSKNEKILSSVKKLIKKNPPDIVLYVDRL 217 (772)
T ss_pred HH-HHHCHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 43-33020688888886317969669860022
No 235
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.10 E-value=0.055 Score=33.17 Aligned_cols=81 Identities=25% Similarity=0.250 Sum_probs=50.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
||-++|-++||||+|++..+... =..+|. +|| +..++.. -..+++ ..++++.|.||--.-
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~--F~~~y~-~Ti----~~~~~~~-------~~v~~~---~v~l~iwDTaGqe~~--- 61 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGY--FPQVYE-PTV----FENYVHD-------IFVDGL---HIELSLWDTAGQEEF--- 61 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCC-CCE----EEEEEEE-------EEECCE---EEEEEEEECCCCCCC---
T ss_conf 89999979976999999997099--999868-837----8999999-------999999---999999847785000---
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 4663289999873037478850123
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
+.+-.. ..|+||+++.|-|..
T Consensus 62 -~~i~~~---~y~~a~~~ilvydi~ 82 (189)
T cd04134 62 -DRLRSL---SYADTDVIMLCFSVD 82 (189)
T ss_pred -CHHHHH---HHCCCCEEEEEEECC
T ss_conf -035567---643786459999789
No 236
>KOG1954 consensus
Probab=96.07 E-value=0.035 Score=34.48 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=64.6
Q ss_pred EEEEECCCCCHHHHHHHHHCCC--CCCCCCCCCCCCCCCE-----------EEEEC--CCHHHHHHHH----------HC
Q ss_conf 8675288878889999874048--9873666867448833-----------79976--8555877764----------21
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTA--SAQAANYPFCTIEPNS-----------GEVAV--PDPRMHKLAE----------IA 59 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~--~~~~~~ypFtTi~pn~-----------g~~~v--~d~~~~~l~~----------~~ 59 (367)
|=++|-=+.|||||.+-|+++. ...|+.-| ||--=++ |.+-+ |+.-+..|.. |.
T Consensus 61 ill~GqyStGKTtfi~yLle~dypg~riGpEP-Ttd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~cs 139 (532)
T KOG1954 61 ILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEP-TTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCS 139 (532)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC-CCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 89972466660399999871778755468999-75306899855865666786256468775165666679999988773
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHH----HHCCCEEEEEECCC
Q ss_conf 86502335799985122354322246632899998----73037478850123
Q gi|254780226|r 60 ESKDLVPTRMSFVDIAGLVRGASKGEGLGNQFLAH----IREVDAIIHVLRCF 108 (367)
Q Consensus 60 ~~~~~~p~~i~~iDvaGLv~gA~~G~GlGN~FL~~----ir~aDalihVVdaf 108 (367)
.-..-+--.|.+||+||+..|..+.-.+|--|-+. +..||-||.+-|+-
T Consensus 140 qmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~h 192 (532)
T KOG1954 140 QLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAH 192 (532)
T ss_pred CCCHHHHHHEEEECCCCCCCCCHHCCCCCCCHHHHHHHHHHHCCEEEEEECHH
T ss_conf 38756550044423675320122201236780889999997456899972466
No 237
>PRK12735 elongation factor Tu; Reviewed
Probab=96.00 E-value=0.017 Score=36.67 Aligned_cols=88 Identities=23% Similarity=0.305 Sum_probs=47.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCC----CCCCCCCC--CC-CCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEEC
Q ss_conf 82486752888788899998740489----87366686--74-4883379976855587776421865023357999851
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTAS----AQAANYPF--CT-IEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDI 74 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~----~~~~~ypF--tT-i~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDv 74 (367)
.+.+|.+|==.+||||+-.+||+... .....|-. .+ -|-..|+.- | .-...+...+ -.+.++|+
T Consensus 12 ~ini~~~GHVD~GKSTL~g~Lt~~~~~~~~~~~~~~~~~D~~~eEr~rGiTi--d----~~~~~fet~~---~~~~~iD~ 82 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGGEAKAYDQIDNAPEEKARGITI--N----TSHVEYETAN---RHYAHVDC 82 (396)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCEEE--E----EEEEEEECCC---EEEEEEEC
T ss_conf 3499999426885898999986145452464312212211665674377379--8----5699997398---05999836
Q ss_pred CCCCCCCCCCCCCHHHHHHH----HHCCCEEEEEECCCC
Q ss_conf 22354322246632899998----730374788501234
Q gi|254780226|r 75 AGLVRGASKGEGLGNQFLAH----IREVDAIIHVLRCFK 109 (367)
Q Consensus 75 aGLv~gA~~G~GlGN~FL~~----ir~aDalihVVdaf~ 109 (367)
|| | .+|+.+ ..++|+-+.||+|.+
T Consensus 83 PG-----H------e~fiknMI~Ga~~aD~alLVV~A~~ 110 (396)
T PRK12735 83 PG-----H------ADYVKNMITGAAQMDGAILVVSAAD 110 (396)
T ss_pred CC-----H------HHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 86-----6------8877666410042567999998687
No 238
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.89 E-value=0.041 Score=34.04 Aligned_cols=91 Identities=21% Similarity=0.276 Sum_probs=53.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHH---H--------C-----CCCEEEEE
Q ss_conf 486752888788899998740489873666867448833799768555877764---2--------1-----86502335
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAE---I--------A-----ESKDLVPT 67 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~---~--------~-----~~~~~~p~ 67 (367)
-|+|+|--..|||||.-+|-..... +.. .+.|..++-|.+.+-... + + ....--+-
T Consensus 2 Ni~iigHvdhGKTTL~D~Ll~~~g~-i~~-------~~~g~~~~~D~~~~E~eRgiTIks~~isl~~~~~~~~~~~~~~~ 73 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGI-ISE-------KLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEY 73 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC-CCH-------HCCCCEEECCCHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCE
T ss_conf 6999866887799999999998598-412-------10663465142433420541586226899986034434568863
Q ss_pred EEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 799985122354322246632899998730374788501234
Q gi|254780226|r 68 RMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 68 ~i~~iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.|.++|.||-+- .+++...-+|-||+-+.||||.+
T Consensus 74 ~inlIDTPGH~d-------F~~ev~~al~~~DgailVVDa~e 108 (222)
T cd01885 74 LINLIDSPGHVD-------FSSEVTAALRLCDGALVVVDAVE 108 (222)
T ss_pred EEEEEECCCHHH-------HHHHHHHHHHHCCEEEEEECCCC
T ss_conf 899972885698-------99999999985681799610457
No 239
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=95.88 E-value=0.094 Score=31.60 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=49.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
..||=+||-++||||+|.+..+... =...|. +||..+.- ..+ ..++ .+.++++.|.||-
T Consensus 5 k~KivlvGd~~VGKTsLi~r~~~~~--F~~~y~-pTi~~~~~-~~~----------~i~~---~~v~l~iwDTaGq---- 63 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC--FPENYV-PTVFENYT-ASF----------EIDT---QRIELSLWDTSGS---- 63 (182)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CEEEEEEE-EEE----------EECC---EEEEEEEEECCCC----
T ss_conf 4899999999989999999998399--999868-73532268-999----------9999---9999999968986----
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 224663289999873037478850123
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
.+=+.+-..+ .|++|++|.|-|..
T Consensus 64 e~f~~l~~~~---y~~~~~~ilvydit 87 (182)
T cd04172 64 PYYDNVRPLS---YPDSDAVLICFDIS 87 (182)
T ss_pred HHCCCCCHHH---HCCCCEEEEEEECC
T ss_conf 2012212555---12787899996489
No 240
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=95.87 E-value=0.056 Score=33.08 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=50.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE--------CCCH---HHHHHHHH---CCCCEEEEEEE
Q ss_conf 4867528887888999987404898736668674488337997--------6855---58777642---18650233579
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVA--------VPDP---RMHKLAEI---AESKDLVPTRM 69 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~--------v~d~---~~~~l~~~---~~~~~~~p~~i 69 (367)
.|||+|--.+|||||.-|+-=.+. .|. -.|.+. +.|. ...+-..+ .-+-.+-..+|
T Consensus 4 niai~gH~gaGKTtL~EalL~~~G-~i~---------r~G~V~~~~~~g~t~~D~~~eE~~R~iSi~~~~~~~~w~~~ki 73 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGG-AIR---------EAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVI 73 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CCC---------CCCEEEECCCCCCCCCCCHHHHHHCCCEEECCEEEEEECCEEE
T ss_conf 799984799998999999998668-633---------3854630368886046887999865944863637887899899
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9985122354322246632899998730374788501234
Q gi|254780226|r 70 SFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 70 ~~iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.|+|.||-.--. .+..+.+|-+|.-+.||||..
T Consensus 74 nliDTPG~~DF~-------~e~~~al~v~D~AviVv~a~~ 106 (267)
T cd04169 74 NLLDTPGHEDFS-------EDTYRTLTAVDSAVMVIDAAK 106 (267)
T ss_pred EEEECCCCHHHH-------HHHHHHHHHHHCEEEEEECCC
T ss_conf 999796977899-------999999988645479952566
No 241
>KOG0084 consensus
Probab=95.79 E-value=0.17 Score=29.79 Aligned_cols=84 Identities=23% Similarity=0.196 Sum_probs=54.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
+||=|+|=.|||||-+.-...+ ..||..++ ..+|+=..- .+--.++++. ++|+=|.||=
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~------~~f~e~~~-sTIGVDf~~------rt~e~~gk~i---KlQIWDTAGQ----- 68 (205)
T KOG0084 10 FKIILIGDSGVGKTCLLLRFKD------DTFTESYI-STIGVDFKI------RTVELDGKTI---KLQIWDTAGQ----- 68 (205)
T ss_pred EEEEEECCCCCCHHHHHHHHCC------CCCCHHHC-CEEEEEEEE------EEEEECCEEE---EEEEEECCCC-----
T ss_conf 9999987789676355566626------98533323-231267889------8755526488---8876663653-----
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 246632899998730374788501234
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
-|-+ --+.+--|+|+++|.|-|+..
T Consensus 69 -ERFr-tit~syYR~ahGii~vyDiT~ 93 (205)
T KOG0084 69 -ERFR-TITSSYYRGAHGIIFVYDITK 93 (205)
T ss_pred -HHHH-HHHHHHCCCCCEEEEEEECCC
T ss_conf -7775-554766167875999997655
No 242
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=95.78 E-value=0.11 Score=31.21 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=23.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 48675288878889999874048987366686
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPF 35 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypF 35 (367)
.++|||-..+|||-.-+++-++-....+.||-
T Consensus 38 tlAlVGESGSGKSvTa~sim~LLp~~~~~~~s 69 (534)
T COG4172 38 TLALVGESGSGKSVTALSILGLLPSPAAAHPS 69 (534)
T ss_pred EEEEEECCCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 79998348898228999999746898545766
No 243
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=95.72 E-value=0.1 Score=31.36 Aligned_cols=89 Identities=19% Similarity=0.226 Sum_probs=49.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE--------CCC---HHHHHHHHHC---CCCEEEEEEE
Q ss_conf 4867528887888999987404898736668674488337997--------685---5587776421---8650233579
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVA--------VPD---PRMHKLAEIA---ESKDLVPTRM 69 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~--------v~d---~~~~~l~~~~---~~~~~~p~~i 69 (367)
.+||+|-|.+||||+--++--.+ ..|. . .|.|+ +.| ....+--.+. -+-.+--.+|
T Consensus 12 niaIi~H~dAGKTTLtE~lL~~~-GaI~-~--------~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~~~~~i 81 (526)
T PRK00741 12 TFAIISHPDAGKTTLTEKLLLFG-GAIQ-E--------AGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLI 81 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-CCCC-C--------CCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEE
T ss_conf 79999378989899999999746-7524-4--------846631467886467885889975964861517786789899
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9985122354322246632899998730374788501234
Q gi|254780226|r 70 SFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 70 ~~iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
.++|.||-+--. -.....+|-+|+-+.||||..
T Consensus 82 NliDTPGh~DF~-------~e~~raL~a~D~Av~Vida~~ 114 (526)
T PRK00741 82 NLLDTPGHEDFS-------EDTYRTLTAVDSALMVIDAAK 114 (526)
T ss_pred EEEECCCCHHHH-------HHHHHHHHHHCEEEEEEECCC
T ss_conf 999098946778-------999999987375999997775
No 244
>PRK00049 elongation factor Tu; Reviewed
Probab=95.61 E-value=0.076 Score=32.21 Aligned_cols=81 Identities=27% Similarity=0.398 Sum_probs=46.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC-----CCCCCCCCC--CC-CCCCEE------EEECCCHHHHHHHHHCCCCEEEEEE
Q ss_conf 248675288878889999874048-----987366686--74-488337------9976855587776421865023357
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTA-----SAQAANYPF--CT-IEPNSG------EVAVPDPRMHKLAEIAESKDLVPTR 68 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~-----~~~~~~ypF--tT-i~pn~g------~~~v~d~~~~~l~~~~~~~~~~p~~ 68 (367)
+.+|++|-=.+||||+-.+||+.- .+....|-. .+ -|-..| .++. ...+ -.
T Consensus 13 ~ni~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~~~~~D~~~eEr~rGiTid~~~~~~------------~t~~---~~ 77 (397)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKYGGAEAKAYDQIDNAPEEKARGITINTAHVEY------------ETEK---RH 77 (397)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCEEEEEEEEE------------ECCC---CE
T ss_conf 29999912588899999999866665438531001333025766762581699879999------------7288---14
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHH----HHHCCCEEEEEECCCC
Q ss_conf 9998512235432224663289999----8730374788501234
Q gi|254780226|r 69 MSFVDIAGLVRGASKGEGLGNQFLA----HIREVDAIIHVLRCFK 109 (367)
Q Consensus 69 i~~iDvaGLv~gA~~G~GlGN~FL~----~ir~aDalihVVdaf~ 109 (367)
+.++|+|| |+ +|+. =..++|+-+.||+|.+
T Consensus 78 ~~~iD~PG-----H~------~fiknmI~Ga~~~D~alLVV~A~~ 111 (397)
T PRK00049 78 YAHVDCPG-----HA------DYVKNMITGAAQMDGAILVVSAAD 111 (397)
T ss_pred EEEECCCC-----HH------HHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 99951786-----38------889998730121567999997488
No 245
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=95.58 E-value=0.096 Score=31.51 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=20.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 48675288878889999874048
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTA 26 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~ 26 (367)
+|-.||=-++|||+++.|+||..
T Consensus 28 qiVVvGdQSsGKSSvLEaitGi~ 50 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 48998887875899999987887
No 246
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.56 E-value=0.21 Score=29.17 Aligned_cols=196 Identities=15% Similarity=0.281 Sum_probs=88.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
-+||+|...+||||+++.+.|.- .|..|.+.+-+ .|+.+..
T Consensus 35 ~~aiiG~nGsGKSTLl~~l~GLl------------~p~~G~I~~~g----------------------~~i~~~~----- 75 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALL------------KPTTGTVTVDD----------------------ITITHKT----- 75 (286)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECC----------------------EECCCCC-----
T ss_conf 99999999981999999997078------------88887599998----------------------9875557-----
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
.++++.++|+.=+++ |.+.+ .. ... ..+..|+.+.- ... .+.+.. ......
T Consensus 76 ----~~~~~~~~r~~ig~V-----fQ~P~-----~q--l~~--~tV~~~i~fg~-~~~--g~~~~e--------~~~r~~ 126 (286)
T PRK13646 76 ----KDKYIRPVRKRIGMV-----FQFPE-----SQ--LFE--DTVEREMIFGP-KNF--KMNLDE--------AKNYAH 126 (286)
T ss_pred ----HHHHHHHHHHCEEEE-----EECCH-----HH--HHH--HHHHHHHHHHH-HHC--CCCHHH--------HHHHHH
T ss_conf ----467899987408999-----98840-----22--207--78999998679-777--999999--------999999
Q ss_pred HHHHH-HH-HHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHC-----CCHHHHHHHHHHHHHCCCC
Q ss_conf 99998-89-98875874103443132677762102357641010010034301110-----1013467877886436984
Q gi|254780226|r 164 SIISS-SL-RLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCK-----KGNIYTEAVQRLASQQNAE 236 (367)
Q Consensus 164 ~~l~~-~~-~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~-----~~n~~~e~i~~l~~~~~~~ 236 (367)
..+.. .+ ..+.+ ..+.++|--+...+.=..-+...|-++++- .+.+ ......+.+.++..+.+..
T Consensus 127 ~~l~~~gl~~~~~~-----~~p~~LSGGqkqRVaiA~aLa~~P~iLilD---EPTagLDp~~~~~i~~ll~~l~~~~g~T 198 (286)
T PRK13646 127 RLLMDLGFSRDVMS-----QSPFQMSGGQMRKIAIVSILAMNPDIIVVD---EPTAGLDPQSKRQVMRLLKSLQTDENKA 198 (286)
T ss_pred HHHHHCCCCHHHHH-----CCCCCCCHHHHHHHHHHHHHHCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHHHHHCCCE
T ss_conf 99998499475775-----694329999999999999985198999983---8744389899999999999999953989
Q ss_pred CCCCCCHHHHHHHHC---------------CCHH---HHHHHHHCCCCCCCHHHHHH
Q ss_conf 033210024665528---------------8426---77887753887422899999
Q gi|254780226|r 237 MIIISAAIEAEISQL---------------PEEE---RALFMEELDISISGLELLIR 275 (367)
Q Consensus 237 ~i~isa~~E~ei~~l---------------~~ee---~~e~l~~~~l~~tgl~~li~ 275 (367)
++.++=.++....+. +.+| ..+.|+..++..+-+-++..
T Consensus 199 iI~iTHdm~~v~~~adrv~vm~~G~Iv~~G~p~evf~~~~~l~~~~l~~P~~~~l~~ 255 (286)
T PRK13646 199 IILISHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLPEIVQLQY 255 (286)
T ss_pred EEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHH
T ss_conf 999913899999969999999898999977899997796579878999984999999
No 247
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.22 Score=29.15 Aligned_cols=168 Identities=18% Similarity=0.256 Sum_probs=80.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.+||||...+||||+..++.|.. .|..|.+.+.+ .|+..+
T Consensus 40 ~l~ivGeSGsGKSTL~r~i~gl~------------~p~sG~I~~~g----------------------~~l~~~------ 79 (266)
T PRK10419 40 TVALLGRSGCGKSTLARLLVGLE------------SPSQGNISWRG----------------------EPLAKL------ 79 (266)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC----------------------EECCCC------
T ss_conf 99999999977999999996699------------99962998899----------------------956758------
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
..+-+..+|.- |.+| |.| +.++.||..-+...-.|-.. .+..+. +..
T Consensus 80 ----~~~~~~~~rr~---i~~V--fQ~-----~~~slnP~~tv~~~i~epl~-~~~~~~----~~~-------------- 126 (266)
T PRK10419 80 ----NRAQRKAFRRD---IQMV--FQD-----SISAVNPRKTVREILREPLR-HLLSLD----KAE-------------- 126 (266)
T ss_pred ----CHHHHHHHHCC---CEEE--EEC-----CHHHCCHHHHHHHHHHHHHH-HHCCCC----HHH--------------
T ss_conf ----99999997547---3899--739-----13636816489999999999-814999----999--------------
Q ss_pred HHHHHHHHHHHC----CCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCC--HHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999988998875----8741034431326777621023576410100100343--0111010134678778864369840
Q gi|254780226|r 164 SIISSSLRLIEE----GKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVS--EHDCKKGNIYTEAVQRLASQQNAEM 237 (367)
Q Consensus 164 ~~l~~~~~~Le~----~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~--e~~~~~~n~~~e~i~~l~~~~~~~~ 237 (367)
...+..+.|+. ...+...+.+++--+..-+.=.+-+..+|-++++--. -.|........+.++++..+.+..+
T Consensus 127 -~~~~~~~~L~~vgL~~~~~~~yP~eLSGGq~QRVaIArAL~~~P~lLi~DEPtsaLD~~~q~~il~ll~~l~~~~g~t~ 205 (266)
T PRK10419 127 -RLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTAC 205 (266)
T ss_pred -HHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEE
T ss_conf -9999999998749988987178433792787778986664069878999688653699999999999999999759899
Q ss_pred CCCCCHHH
Q ss_conf 33210024
Q gi|254780226|r 238 IIISAAIE 245 (367)
Q Consensus 238 i~isa~~E 245 (367)
+.++=.+.
T Consensus 206 i~ITHDl~ 213 (266)
T PRK10419 206 LFITHDLR 213 (266)
T ss_pred EEECCCHH
T ss_conf 99889999
No 248
>KOG0076 consensus
Probab=95.54 E-value=0.028 Score=35.09 Aligned_cols=80 Identities=28% Similarity=0.385 Sum_probs=47.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCC-------CCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf 24867528887888999987404898736668-------67448833799768555877764218650233579998512
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYP-------FCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIA 75 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~yp-------FtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDva 75 (367)
|-+=|+|+-|+||+||.-++-. .- ..+|- -+|..-|+|.+.|- .+.+.|.|+.
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt-~~--~~~~~~l~~~ki~~tvgLnig~i~v~-----------------~~~l~fwdlg 77 (197)
T KOG0076 18 YSVLILGLDNAGKTTFLEALKT-DF--SKAYGGLNPSKITPTVGLNIGTIEVC-----------------NAPLSFWDLG 77 (197)
T ss_pred HHHEEECCCCCCCHHHHHHHHH-HH--HHHHCCCCHHHEECCCCEEECCEEEC-----------------CCEEEEEECC
T ss_conf 3100242445785208988777-88--76516888888101224031316412-----------------5416778867
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2354322246632899998730374788501234
Q gi|254780226|r 76 GLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 76 GLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
| --.=+.+..+. -..|.++|.||||..
T Consensus 78 G----Qe~lrSlw~~y---Y~~~H~ii~viDa~~ 104 (197)
T KOG0076 78 G----QESLRSLWKKY---YWLAHGIIYVIDATD 104 (197)
T ss_pred C----HHHHHHHHHHH---HHHHCEEEEEECCCC
T ss_conf 8----08789999999---997263477641777
No 249
>pfam00735 Septin Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis.
Probab=95.53 E-value=0.064 Score=32.70 Aligned_cols=67 Identities=25% Similarity=0.334 Sum_probs=34.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHH-CCCCEEEEEEEEEEECCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642-1865023357999851223
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEI-AESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~-~~~~~~~p~~i~~iDvaGL 77 (367)
+.+=+||-..+|||||.|.|-+........+|-.+ ++-.-.+.+.-. ...+ .+ -+...+.++|.||.
T Consensus 5 fnimvvG~sGlGKTTfiNtL~~~~~~~~~~~~~~~-~~~~~t~~i~~~----~~~iee~---g~~l~LtiiDTpGf 72 (280)
T pfam00735 5 FTLMVVGESGLGKTTLINTLFLTDLYPERGIPGPS-EKIKKTVEIKAT----TVEIEED---GVKLNLTVIDTPGF 72 (280)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCEEEE----EEEEEEC---CEEEEEEEEECCCC
T ss_conf 89999779999789999998578577866788843-355677534889----9999889---98999999989984
No 250
>pfam08438 MMR_HSR1_C GTPase of unknown function C-terminal. This domain is found at the C-terminus of pfam01926 in archaeal and eukaryotic GTP-binding proteins.
Probab=95.49 E-value=0.01 Score=38.05 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=33.0
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHH-----------------------CCCHHH--HHHHHHC---CCCCCCHHHHHHH-H
Q ss_conf 788643698403321002466552-----------------------884267--7887753---8874228999999-9
Q gi|254780226|r 227 QRLASQQNAEMIIISAAIEAEISQ-----------------------LPEEER--ALFMEEL---DISISGLELLIRS-G 277 (367)
Q Consensus 227 ~~l~~~~~~~~i~isa~~E~ei~~-----------------------l~~ee~--~e~l~~~---~l~~tgl~~li~~-~ 277 (367)
.++..+.+..++++||..|..|.. +++.++ .+++++. ..+.||+|.++++ +
T Consensus 6 ~kl~e~~~~~vvp~SA~~ElaLr~a~k~glI~Y~pGd~~F~i~~~~~ls~~Q~~aL~~I~~~vl~~~g~TGVq~~ln~aV 85 (92)
T pfam08438 6 EKLKEKYDYIVVPTSAEAELALRRAAKAGLIKYDPGDEDFEITDEKPLSDKQKEALEKIRELVLDRFGSTGVQEAINRAV 85 (92)
T ss_pred HHHHHHCCCCEEECCHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99998779968977689999999999889976779998536369998899999999999999988828724999999999
Q ss_pred HHHCCCE
Q ss_conf 9872964
Q gi|254780226|r 278 YRLLDLI 284 (367)
Q Consensus 278 ~~lL~li 284 (367)
|++|++|
T Consensus 86 Fd~L~~I 92 (92)
T pfam08438 86 FDLLDLI 92 (92)
T ss_pred HHHHCCC
T ss_conf 9987449
No 251
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=95.43 E-value=0.11 Score=31.06 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=46.6
Q ss_pred EEEEECCCCCHHHHHHHHH---CCCCC--------CCCCCCCCCCCCCEEEEECCCHHHHHHH---HH---CCCCEEEEE
Q ss_conf 8675288878889999874---04898--------7366686744883379976855587776---42---186502335
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALT---RTASA--------QAANYPFCTIEPNSGEVAVPDPRMHKLA---EI---AESKDLVPT 67 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT---~~~~~--------~~~~ypFtTi~pn~g~~~v~d~~~~~l~---~~---~~~~~~~p~ 67 (367)
|+++|-..+||||+..++- +.-.. +....- ......+.+-|..-.-.. .+ +..-.+-..
T Consensus 2 i~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~g----k~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~ 77 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMG----KGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKY 77 (219)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC----CCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCE
T ss_conf 89996689989999999999859976889999999998549----98750556613898798589258858999984993
Q ss_pred EEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 799985122354322246632899998730374788501234
Q gi|254780226|r 68 RMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 68 ~i~~iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
++.++|.||-.. .-..-..-++.||+-|.||||..
T Consensus 78 ~~~iiDtPGH~d-------f~~~mi~g~~~ad~ailvvda~~ 112 (219)
T cd01883 78 RFTILDAPGHRD-------FVPNMITGASQADVAVLVVDARK 112 (219)
T ss_pred EEEEEECCCCHH-------HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 699987897266-------78899987753166899998576
No 252
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.42 E-value=0.022 Score=35.80 Aligned_cols=34 Identities=32% Similarity=0.600 Sum_probs=27.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
.+||+|...+|||||++.++|. +.|..|.+.+++
T Consensus 28 ~~~l~G~NGsGKTTl~~~l~G~------------~~~~~G~i~~~~ 61 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGE------------LEPDEGIVTWGS 61 (144)
T ss_pred EEEEECCCCCCHHHHHHHHHCC------------CCCCCEEEEECC
T ss_conf 9999989998499999998489------------889850999999
No 253
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.41 E-value=0.15 Score=30.31 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=26.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-++|+|...+|||||++.+.|.. +|..|.+.+.+
T Consensus 28 ~~~i~GpSG~GKSTlLr~iaGl~------------~p~~G~I~~~g 61 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE------------EPTSGRIYIGG 61 (213)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99999999880999999997699------------99863999999
No 254
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.38 E-value=0.018 Score=36.38 Aligned_cols=36 Identities=39% Similarity=0.494 Sum_probs=28.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCH
Q ss_conf 248675288878889999874048987366686744883379976855
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDP 50 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~ 50 (367)
-++||+|...+|||||++++++. .+|..|.+.+-+.
T Consensus 31 ~~v~ivG~sGsGKSTLl~ll~gl------------~~p~~G~I~i~g~ 66 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGL------------YKPTSGSVLLDGT 66 (220)
T ss_pred CEEEEECCCCCHHHHHHHHHHCC------------CCCCCCEEEECCE
T ss_conf 99999999998599999999672------------5478658999999
No 255
>PRK13351 elongation factor G; Reviewed
Probab=95.37 E-value=0.11 Score=31.08 Aligned_cols=90 Identities=20% Similarity=0.267 Sum_probs=54.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE----CCCHHHHHHH---HHC-C--CCEEEEEEEEEEE
Q ss_conf 4867528887888999987404898736668674488337997----6855587776---421-8--6502335799985
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVA----VPDPRMHKLA---EIA-E--SKDLVPTRMSFVD 73 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~----v~d~~~~~l~---~~~-~--~~~~~p~~i~~iD 73 (367)
.|||||---.|||||--+|-- .+.+-+.+ |.+. +-|.+.+--. .+. . +-.+-...|.|+|
T Consensus 10 Ni~IiaHvd~GKTTL~d~Ll~--~~g~i~~~--------g~v~~g~t~~D~~~~E~eRgITikss~~sl~~~~~~iNlID 79 (687)
T PRK13351 10 NIGIMAHIDAGKTTLTERILF--YTGKIHKM--------GSVEDGNTVSDWMPQEQERGISIESAAATCDWKNHRINLID 79 (687)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HCCCCCCC--------CCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEE
T ss_conf 899991799898999999999--74998758--------71547874478829999749877621599988998999980
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 1223543222466328999987303747885012345
Q gi|254780226|r 74 IAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKD 110 (367)
Q Consensus 74 vaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~~ 110 (367)
.||-+--. .++-..+|=||.-+.||||.+.
T Consensus 80 TPGHvDF~-------~Ev~~aLr~~DgallVVDaveG 109 (687)
T PRK13351 80 TPGHIDFT-------GEVERSLRVLDGAVVVIDAVTG 109 (687)
T ss_pred CCCCCCHH-------HHHHHHHHHHCEEEEEEECCCC
T ss_conf 97974309-------9999999987868999978999
No 256
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.36 E-value=0.024 Score=35.61 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 248675288878889999874048
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTA 26 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~ 26 (367)
=++||||.-.+|||||++.++|..
T Consensus 34 e~vgLvG~NGaGKSTLlriLaG~~ 57 (556)
T PRK11819 34 AKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899999999971999999984799
No 257
>KOG0395 consensus
Probab=95.30 E-value=0.23 Score=28.93 Aligned_cols=79 Identities=25% Similarity=0.281 Sum_probs=45.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC-CEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 24867528887888999987404898736668674488-33799768555877764218650233579998512235432
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEP-NSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~p-n~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
.|+-++|-|+||||.+-...-+. --+..|. .||+- ..-.+.+.+ -+..++++|.+|.-+-.
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~--~f~~~y~-ptied~y~k~~~v~~---------------~~~~l~ilDt~g~~~~~ 65 (196)
T KOG0395 4 YKVVVLGAGGVGKSALTIQFLTG--RFVEDYD-PTIEDSYRKELTVDG---------------EVCMLEILDTAGQEEFS 65 (196)
T ss_pred EEEEEECCCCCCCCCEEEEECCC--CCCCCCC-CCCCCCEEEEEEECC---------------EEEEEEEEECCCCCCCH
T ss_conf 47999778988853057896357--5544347-976763159999899---------------78899998288853476
Q ss_pred CCCCCCHHHHHHH-HHCCCEEEEEECC
Q ss_conf 2246632899998-7303747885012
Q gi|254780226|r 82 SKGEGLGNQFLAH-IREVDAIIHVLRC 107 (367)
Q Consensus 82 ~~G~GlGN~FL~~-ir~aDalihVVda 107 (367)
...+. ++++|+.+.|..+
T Consensus 66 --------~~~~~~~~~~~gF~lVysi 84 (196)
T KOG0395 66 --------AMRDLYIRNGDGFLLVYSI 84 (196)
T ss_pred --------HHHHHHHHCCCEEEEEEEC
T ss_conf --------8888775548689999989
No 258
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=95.28 E-value=0.19 Score=29.59 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=45.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC-CCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 248675288878889999874048987366686-7448833799768555877764218650233579998512235432
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPF-CTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypF-tTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
++|=|+|+..+|||+.=|.+-|...-+....+- .|-.-...... .++ -+|.+||.|||-.-.
T Consensus 1 LrIvLlGktGsGKSstgNtILG~~~F~s~~~~~svT~~c~~~~~~------------~~g-----r~v~VIDTPg~~dt~ 63 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV------------WDG-----RRVNVIDTPGLFDTS 63 (196)
T ss_pred CEEEEECCCCCCCHHHHEEECCCCCCCCCCCCCCCCEEEEEEEEE------------ECC-----CEEEEEECCCCCCCC
T ss_conf 989997899986153403256876667889999875588888899------------889-----379999677635655
Q ss_pred CCCCCCHHHHHHHHHCC--------CEEEEEECC
Q ss_conf 22466328999987303--------747885012
Q gi|254780226|r 82 SKGEGLGNQFLAHIREV--------DAIIHVLRC 107 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~a--------DalihVVda 107 (367)
....+.-..|.+| +|++.|+..
T Consensus 64 ----~~~~~~~~ei~~~~~l~~pGpHa~LLVi~~ 93 (196)
T cd01852 64 ----VSPEQLSKEIVRCLSLSAPGPHAFLLVVPL 93 (196)
T ss_pred ----CCHHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf ----897999999999998438997399999978
No 259
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.028 Score=35.18 Aligned_cols=33 Identities=36% Similarity=0.551 Sum_probs=26.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
-+||+|...+||||+++.++|... |..|.+.+.
T Consensus 32 ~~~iiGpsGsGKSTLl~~i~Gl~~------------p~~G~I~~~ 64 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLER------------PTSGEVLVD 64 (220)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEEC
T ss_conf 999999999579999999975999------------887389999
No 260
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.20 E-value=0.02 Score=36.12 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=27.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 24867528887888999987404898736668674488337997685
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
=++||||...+|||||++.+.+.- +|..|.+.+-+
T Consensus 30 ~~iaIvG~sGsGKSTLl~ll~gl~------------~p~~G~I~idg 64 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFY------------DPTSGEILLDG 64 (238)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC------------CCCCCEEEECC
T ss_conf 999999999998999999982386------------18851899999
No 261
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.027 Score=35.29 Aligned_cols=28 Identities=39% Similarity=0.580 Sum_probs=22.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 4867528887888999987404898736
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAA 31 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~ 31 (367)
++||||.-.+|||||++.++|.-.+..+
T Consensus 29 ~vgLVG~NGsGKSTLlklL~G~~~~d~G 56 (638)
T PRK10636 29 KVGLVGKNGCGKSTLLALLKNEISADGG 56 (638)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCE
T ss_conf 9999889998899999998089988850
No 262
>KOG0448 consensus
Probab=95.17 E-value=0.12 Score=30.90 Aligned_cols=102 Identities=22% Similarity=0.277 Sum_probs=60.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCC----CCCCCCCEE---EEECCC--------------------H--HH
Q ss_conf 824867528887888999987404898736668----674488337---997685--------------------5--58
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYP----FCTIEPNSG---EVAVPD--------------------P--RM 52 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~yp----FtTi~pn~g---~~~v~d--------------------~--~~ 52 (367)
+||+.|.|-.|.||||+-||+---...+-+-+| ||-++--.| +.-.|+ + +.
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 34799957877768999999998720766665531234663146773115516887343218887777875173300376
Q ss_pred HHHHHHCCCCE---EEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECC
Q ss_conf 77764218650---23357999851223543222466328999987303747885012
Q gi|254780226|r 53 HKLAEIAESKD---LVPTRMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRC 107 (367)
Q Consensus 53 ~~l~~~~~~~~---~~p~~i~~iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVda 107 (367)
+-+..+|.|+. ...--+.++|-|||--++- +---.-++--++|+.+.|+-|
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se----~tswid~~cldaDVfVlV~Na 242 (749)
T KOG0448 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE----LTSWIDSFCLDADVFVLVVNA 242 (749)
T ss_pred CEEEEEEECCCCCHHHHCCCEEECCCCCCCCHH----HHHHHHHHHHCCCEEEEEECC
T ss_conf 506899942863213305501205888888602----459999764407758999617
No 263
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=95.16 E-value=0.03 Score=34.91 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=51.4
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHCCCEEEECC----------CCCCCCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECC
Q ss_conf 8775388742289999999987296466105----------78754540127867677851100121034836999736
Q gi|254780226|r 259 FMEELDISISGLELLIRSGYRLLDLITYFTV----------GPKETRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTIS 327 (367)
Q Consensus 259 ~l~~~~l~~tgl~~li~~~~~lL~li~~~tv----------g~~e~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~ 327 (367)
++..+ +.+||+..+.++. +.++.||+ |...+|+.....|+|+.++++.||++ ||++|..++
T Consensus 279 i~~~y--~~lgl~~~ft~g~---~evrawti~~g~kap~aaG~Ih~Dfe~~fi~aevi~~~d~i~~~---~~~~Akeag 349 (372)
T COG0012 279 IRAGY--GLLGLQTYFTAGV---KEVRAWTIKDGSKAPDAAGVIHPDFEKGFIRAEVISYADLIHYG---GEAAAKEAG 349 (372)
T ss_pred HHHHH--CCCCHHHHHHHCC---CEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEHHHHHHCC---CHHHHHHHC
T ss_conf 99874--6555778973268---75999984368853454776040532224555676499998627---489998826
No 264
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.15 E-value=0.065 Score=32.67 Aligned_cols=89 Identities=18% Similarity=0.395 Sum_probs=53.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
+.=+.++|-|.|||||+..+|-.. |-=.|+.--.|.+-|-. .+.+| ++|+.+|- .
T Consensus 39 P~vVavvGPpgvGKtTLiksLvk~-------ytk~~l~~i~GPiTvvs---------~K~rR-----iTfiEc~n----D 93 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKN-------YTKQNISDIKGPITVVT---------GKKRR-----LTFIECPN----D 93 (225)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH-------HHHCCCCCCCCCEEEEE---------CCCEE-----EEEEECCC----H
T ss_conf 969999898997788999999999-------85443755788879994---------68426-----89997486----0
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIET 131 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~ 131 (367)
+ |..+|-..=||..+.+||++-.=+ ++-+|||+.
T Consensus 94 -----i-~smiD~AKvADlVLl~iD~s~GfE----------mEtfEfLni 127 (225)
T cd01882 94 -----I-NAMIDIAKVADLVLLLIDASFGFE----------METFEFLNI 127 (225)
T ss_pred -----H-HHHHHHHHHHHEEEEEECCCCCEE----------EEHHHHHHH
T ss_conf -----9-999878876433688861665535----------208999999
No 265
>PRK13768 GTPase; Provisional
Probab=95.11 E-value=0.045 Score=33.72 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=20.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 982486752888788899998740
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~ 24 (367)
|.+-+=++|-|.+|||||-+++.+
T Consensus 1 M~~~~~ViGpaGSGKsT~~~~l~~ 24 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLVGALSD 24 (253)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 971899989999988999999999
No 266
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.03 Score=34.91 Aligned_cols=32 Identities=38% Similarity=0.575 Sum_probs=26.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 48675288878889999874048987366686744883379976
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
-++|+|...+||||+++.+.|.. .|..|.+.+
T Consensus 26 ~~~ilGpSGsGKSTLl~li~Gl~------------~p~sG~I~i 57 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE------------TPQSGRVLI 57 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEE
T ss_conf 99999999955999999997699------------988529999
No 267
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=95.08 E-value=0.17 Score=29.91 Aligned_cols=96 Identities=18% Similarity=0.106 Sum_probs=44.9
Q ss_pred EEEEEECCCCCHHHHHHHHH---CCCCC-CCCCC---CCCCCCCCEEEEECCCHHHH-HH-------HH-HCCCCEEEEE
Q ss_conf 48675288878889999874---04898-73666---86744883379976855587-77-------64-2186502335
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALT---RTASA-QAANY---PFCTIEPNSGEVAVPDPRMH-KL-------AE-IAESKDLVPT 67 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT---~~~~~-~~~~y---pFtTi~pn~g~~~v~d~~~~-~l-------~~-~~~~~~~~p~ 67 (367)
|+-++|--..||||+...|- +.-.. .++.+ .-.+-.+....+.+.|..-+ +. +. .+... .-
T Consensus 1 ~~vv~GHVD~GKSTL~g~LL~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~~~~f~~~---~~ 77 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP---KR 77 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEEEEEEEEC---CC
T ss_conf 969997488988899999999829967899999998875416763000343468687882697941058999819---92
Q ss_pred EEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 799985122354322246632899998730374788501234
Q gi|254780226|r 68 RMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 68 ~i~~iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
++.++|.||=.. .-..-..-+++||+-+.||||.+
T Consensus 78 ~~~iiDtPGH~d-------fi~nmi~gas~aD~ailVVda~~ 112 (208)
T cd04166 78 KFIIADTPGHEQ-------YTRNMVTGASTADLAILLVDARK 112 (208)
T ss_pred EEEEEECCCCHH-------HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 699987896288-------99999999863774799997588
No 268
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.02 E-value=0.03 Score=34.96 Aligned_cols=33 Identities=42% Similarity=0.693 Sum_probs=27.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
++||||-+.+||||+.+.+.|. +.|..|.+.|.
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi------------~~Pt~G~v~v~ 87 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGI------------YKPTSGKVKVT 87 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHCC------------CCCCCCEEEEC
T ss_conf 9989878998589999999587------------17988259981
No 269
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=95.01 E-value=0.019 Score=36.19 Aligned_cols=23 Identities=48% Similarity=0.777 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 82486752888788899998740
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~ 24 (367)
++.|||.|-|.+|||||.+++..
T Consensus 29 a~~iGiTG~PGaGKStli~~l~~ 51 (267)
T pfam03308 29 AHRVGITGVPGAGKSTLIEALGM 51 (267)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 55998768998879999999999
No 270
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.025 Score=35.43 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=26.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|.-.+||||+|+.++|.. .|.-|.+.+-+
T Consensus 28 i~~iiGpnGaGKSTl~~~i~Gl~------------~p~~G~I~~~g 61 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE------------RPDSGEILIDG 61 (213)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99999999973999999997599------------98970899999
No 271
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.97 E-value=0.04 Score=34.09 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=25.8
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
++|+|...+||||+++.++|.. .|..|.+.+-.
T Consensus 30 ~~lvGpnGaGKSTLl~~i~Gl~------------~p~~G~I~~~G 62 (255)
T PRK11248 30 LVVLGPSGCGKTTLLNLIAGFV------------PPQHGSITLDG 62 (255)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 9999999846999999997599------------88997185799
No 272
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.97 E-value=0.025 Score=35.45 Aligned_cols=34 Identities=38% Similarity=0.552 Sum_probs=27.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
++||||.+.+|||||++.+.+. .+|..|.+.+-.
T Consensus 30 ~vaivG~sGsGKSTll~ll~gl------------~~p~~G~I~i~g 63 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRF------------YVPENGRVLVDG 63 (237)
T ss_pred EEEEECCCCCHHHHHHHHHHCC------------CCCCCCEEEECC
T ss_conf 9999999998599999999677------------657987899999
No 273
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.88 E-value=0.028 Score=35.12 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
++||||...+||||+++++.|.
T Consensus 29 ~~~IvG~sGsGKSTLl~~l~g~ 50 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998099999998555
No 274
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=94.86 E-value=0.03 Score=34.91 Aligned_cols=65 Identities=29% Similarity=0.444 Sum_probs=35.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC-C---CCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCC
Q ss_conf 2486752888788899998740489873666867-4---4883379976855587776421865023357999851223
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFC-T---IEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFt-T---i~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGL 77 (367)
+.+=+||-...|||||.|.|-+. ..-..+.+-. + +++.+.+... ...+.. .-+...+.++|.||.
T Consensus 5 fnimVvG~sGlGKsTfiNtLf~~-~~~~~~~~~~~~~~~~~~t~~i~~~-------~~~i~e--~g~~l~LtviDTpGf 73 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNT-KLIPSDYPPDPAEEHIDKTVEIKSS-------KAEIEE--NGVKLKLTVIDTPGF 73 (276)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC-CCCCCCCCCCCHHHCCCCCCEEEEE-------EEEEEE--CCEEEEEEEEECCCC
T ss_conf 99999768999889999997478-5778777788132056888258999-------999963--998999999976884
No 275
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.85 E-value=0.028 Score=35.14 Aligned_cols=34 Identities=41% Similarity=0.601 Sum_probs=27.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
++||||...+||||+++++++.- +|..|.+.+..
T Consensus 36 ~v~ivG~sGsGKSTLl~ll~g~~------------~p~~G~I~idg 69 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL------------EAEEGKIEIDG 69 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC------------CCCCCEEEECC
T ss_conf 99999999987999999999872------------88887899999
No 276
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.84 E-value=0.025 Score=35.51 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 982486752888788899998740
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~ 24 (367)
|.|.|||+|.|.+||||+-+.+..
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 964999957887788999999997
No 277
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=94.83 E-value=0.035 Score=34.44 Aligned_cols=35 Identities=46% Similarity=0.791 Sum_probs=29.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCH
Q ss_conf 48675288878889999874048987366686744883379976855
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDP 50 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~ 50 (367)
+++|+|-..+||||++|.+.| | +.|-.|.+.+-|.
T Consensus 26 ~VAi~GpSGAGKSTLLnLiAG----------F--~~PasG~i~~nd~ 60 (213)
T TIGR01277 26 RVAILGPSGAGKSTLLNLIAG----------F--LEPASGEIKVNDK 60 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHH----------H--CCCCCEEEEECCC
T ss_conf 688875898627889877864----------0--4776405887780
No 278
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.029 Score=35.06 Aligned_cols=34 Identities=41% Similarity=0.652 Sum_probs=26.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
++||+|...+|||||+++++|.- +|..|.+.+..
T Consensus 30 ~i~ivG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~g 63 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLY------------DPTSGEILIDG 63 (171)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 99999999983999999997677------------58974899999
No 279
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.81 E-value=0.029 Score=35.05 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=20.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 24867528887888999987404
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~ 25 (367)
=++||+|...+||||+++++++.
T Consensus 31 e~vaIvG~sGsGKSTLl~lL~gl 53 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999999999799999999603
No 280
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.80 E-value=0.033 Score=34.62 Aligned_cols=33 Identities=27% Similarity=0.535 Sum_probs=25.8
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
+||+|.-.+||||+++.++|.. .|..|.+.+-.
T Consensus 29 ~gllG~NGaGKSTLl~~i~Gl~------------~p~~G~i~i~G 61 (208)
T cd03268 29 YGFLGPNGAGKTTTMKIILGLI------------KPDSGEITFDG 61 (208)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 9999999999999999995783------------78989999999
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.78 E-value=0.025 Score=35.47 Aligned_cols=56 Identities=30% Similarity=0.462 Sum_probs=36.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf 982486752888788899998740489873666867448833799768555877764218650233579998512
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIA 75 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDva 75 (367)
|.|||+|.|-|.|||||+...+.+. ..+-+| ++|=..+|.-| .+++|+- .+++|++
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~----L~~~g~-----kvgGf~t~EVR-------~gGkR~G---F~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEK----LREKGY-----KVGGFITPEVR-------EGGKRIG---FKIVDLA 59 (179)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH----HHHCCC-----EEEEEEEEEEE-------CCCEEEE---EEEEECC
T ss_conf 5459998679984589999999999----985596-----65139831142-------0882751---5999814
No 282
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.73 E-value=0.033 Score=34.69 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=27.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
+++|+|...+|||||++.+++.- .|..|.+.+..
T Consensus 30 ~i~IvG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~g 63 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY------------DVDSGRILIDG 63 (234)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 99999899982999999996676------------67886899999
No 283
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.73 E-value=0.048 Score=33.55 Aligned_cols=33 Identities=33% Similarity=0.522 Sum_probs=26.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
.+||+|...+||||+.+++.|.- .|..|.+.+-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~------------~p~~G~I~~~ 65 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL------------KPTSGSIIFD 65 (228)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 99999999986999999997289------------8788669989
No 284
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=94.73 E-value=0.033 Score=34.64 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=5.2
Q ss_pred CHHHHHHHHHC
Q ss_conf 32899998730
Q gi|254780226|r 87 LGNQFLAHIRE 97 (367)
Q Consensus 87 lGN~FL~~ir~ 97 (367)
+|+++..++|+
T Consensus 75 ~~~~i~~~lR~ 85 (547)
T PRK10522 75 LGHHFVYRLRS 85 (547)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 285
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.72 E-value=0.032 Score=34.71 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=25.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 48675288878889999874048987366686744883379976
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
++||||...+||||+++.+++.- +|.-|.+.+
T Consensus 65 ~vaIVG~sGSGKSTLl~lL~gl~------------~p~~G~I~~ 96 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGEL------------EPSEGKIKH 96 (282)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEE
T ss_conf 99999999981999999995787------------278658999
No 286
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.70 E-value=0.035 Score=34.48 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=15.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
++||||...+||||+.+.++|.
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999879999889999998367
No 287
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.68 E-value=0.065 Score=32.67 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
.+||+|...+||||+++.+.|.
T Consensus 33 ~~~IvG~sGsGKSTLl~~i~G~ 54 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999998589999998189
No 288
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=94.66 E-value=0.12 Score=30.93 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=46.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCC---------------CCC----CCCCCC----------CCCCEEEEECCCHHH
Q ss_conf 824867528887888999987404898---------------736----668674----------488337997685558
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASA---------------QAA----NYPFCT----------IEPNSGEVAVPDPRM 52 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~---------------~~~----~ypFtT----------i~pn~g~~~v~d~~~ 52 (367)
.++++++|-=.+||||+.-.|. ...- +.+ .|.|-+ |--++|..+
T Consensus 7 ~l~i~~~GhVD~GKSTL~G~Ll-~~~g~v~~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er~rGiTidv~~~~------ 79 (443)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLI-YKLGGIDKRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWK------ 79 (443)
T ss_pred EEEEEEECCCCCCHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHCCCEEEEEEEE------
T ss_conf 6599999477982888899999-873884688999998888871787200044530776676367107347999------
Q ss_pred HHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHH----HHCCCEEEEEECCCCC
Q ss_conf 777642186502335799985122354322246632899998----7303747885012345
Q gi|254780226|r 53 HKLAEIAESKDLVPTRMSFVDIAGLVRGASKGEGLGNQFLAH----IREVDAIIHVLRCFKD 110 (367)
Q Consensus 53 ~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~GlGN~FL~~----ir~aDalihVVdaf~~ 110 (367)
+...+ -.+.++|+|| | .+|+.+ +.++|+-|.||||-..
T Consensus 80 ------f~t~~---~~~~iiD~PG-----H------~~fi~nmi~Gas~aD~ailvVdA~~G 121 (443)
T PTZ00141 80 ------FETPK---YYYTVIDAPG-----H------RDFIKNMITGTSQADVALLVVPAEVG 121 (443)
T ss_pred ------EECCC---EEEEEEECCC-----H------HHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf ------94398---8999998997-----2------88899999634107758999986778
No 289
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.63 E-value=0.035 Score=34.46 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=6.7
Q ss_pred EEEEECCCCCHHHHHHHHH
Q ss_conf 8675288878889999874
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALT 23 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT 23 (367)
+||||...+||||+++.+.
T Consensus 370 vaIVG~SGsGKSTL~~LL~ 388 (593)
T PRK10790 370 VALVGHTGSGKSTLASLLM 388 (593)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9987999886899999999
No 290
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=94.62 E-value=0.043 Score=33.85 Aligned_cols=41 Identities=37% Similarity=0.540 Sum_probs=31.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 86752888788899998740489873666867448833799768555877764
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAE 57 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~ 57 (367)
++|||...||||||.=.|-|+.. |..|.|.+-=..+.+++.
T Consensus 34 ~~IvG~SGSGKSTLLHlLGGLD~------------PT~G~v~f~G~~l~~lS~ 74 (221)
T TIGR02211 34 VAIVGSSGSGKSTLLHLLGGLDN------------PTSGEVLFNGQSLSKLSS 74 (221)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC------------CCCCEEEECCCCHHHCCH
T ss_conf 79873678716899998730689------------963158970632344044
No 291
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.57 E-value=0.035 Score=34.44 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=26.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
++||||...+||||+.+.+.+.- .|..|.+.+-+
T Consensus 29 ~v~ivG~sGsGKSTLl~ll~gl~------------~p~~G~I~idg 62 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY------------DVSSGSILIDG 62 (236)
T ss_pred EEEEECCCCCCHHHHHHHHCCCC------------CCCCCEEEECC
T ss_conf 99999999998999999974385------------48874899999
No 292
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=94.54 E-value=0.029 Score=35.07 Aligned_cols=23 Identities=48% Similarity=0.810 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 82486752888788899998740
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~ 24 (367)
+..|||.|-|.+|||||.+++..
T Consensus 49 a~~iGiTG~pG~GKStli~~l~~ 71 (325)
T PRK09435 49 ALRIGITGVPGVGKSTFIEALGM 71 (325)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 25997427999868899999999
No 293
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.038 Score=34.23 Aligned_cols=36 Identities=33% Similarity=0.595 Sum_probs=27.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 824867528887888999987404898736668674488337997685
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
+-+++|+|...+|||||.+.+.+.- .|..|.+.+-+
T Consensus 29 Ge~vaivG~sGsGKSTLl~ll~gl~------------~p~~G~I~idg 64 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFY------------DPQKGQILIDG 64 (229)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 9999999999980999999996686------------67873899999
No 294
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.48 E-value=0.037 Score=34.29 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 4867528887888999987404898
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASA 28 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~ 28 (367)
++||||.-.+|||||++.++|...+
T Consensus 31 ~vgLVG~NGsGKSTLl~iL~G~~~~ 55 (632)
T PRK11147 31 RVCLVGRNGAGKSTLMKILSGEVLL 55 (632)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999998799999998389988
No 295
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.47 E-value=0.033 Score=34.64 Aligned_cols=20 Identities=45% Similarity=0.659 Sum_probs=8.1
Q ss_pred EEEEECCCCCHHHHHHHHHC
Q ss_conf 86752888788899998740
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~ 24 (367)
+||||...+||||+.+.+.+
T Consensus 344 vaIVG~SGsGKSTLl~LL~g 363 (569)
T PRK10789 344 LGICGPTGSGKSTLLSLIQR 363 (569)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99879999987999999997
No 296
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.45 E-value=0.038 Score=34.27 Aligned_cols=31 Identities=39% Similarity=0.612 Sum_probs=25.0
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 8675288878889999874048987366686744883379976
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
+||+|.-.+||||||++++|.. .|..|.+.+
T Consensus 30 ~~liGpNGaGKSTLlk~l~Gl~------------~p~~G~I~~ 60 (271)
T PRK13638 30 TGLVGANGCGKSTLFMNLSGLL------------RPQKGAVLW 60 (271)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEE
T ss_conf 9999999980999999996688------------888607999
No 297
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.44 E-value=0.042 Score=33.94 Aligned_cols=34 Identities=41% Similarity=0.595 Sum_probs=27.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
++||+|...+|||||++.+.+.- +|..|.+.+..
T Consensus 32 ~v~ivG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~g 65 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLV------------ELSSGSILIDG 65 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 99999999998999999996797------------18984899999
No 298
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.43 E-value=0.038 Score=34.21 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=25.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 48675288878889999874048987366686744883379976
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
-+||+|...+||||+++.++|.- .|..|.+.+
T Consensus 52 ivgllG~NGaGKSTLlk~I~Gl~------------~P~~G~I~~ 83 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSL------------SPTVGKVDR 83 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEE
T ss_conf 99999899861999999996798------------888747999
No 299
>KOG0468 consensus
Probab=94.40 E-value=0.25 Score=28.72 Aligned_cols=88 Identities=20% Similarity=0.386 Sum_probs=54.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCC-----CCCCCC-----------CCCCCEEEEECCCHHHHHHHHHCCCCEEEEE
Q ss_conf 486752888788899998740489873-----666867-----------4488337997685558777642186502335
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQA-----ANYPFC-----------TIEPNSGEVAVPDPRMHKLAEIAESKDLVPT 67 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~-----~~ypFt-----------Ti~pn~g~~~v~d~~~~~l~~~~~~~~~~p~ 67 (367)
.+|++|.-..|||+|...|-+....+. +..-|| +|+.+.-.+-++| .+++.+.
T Consensus 130 nV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D---------~~~KS~l-- 198 (971)
T KOG0468 130 NVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSD---------SKGKSYL-- 198 (971)
T ss_pred EEEEEECCCCCHHHHHHHHCEECCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCEEEEEEC---------CCCCEEE--
T ss_conf 99886114567157877631313465555423563136642456754856761322899856---------7672433--
Q ss_pred EEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 7999851223543222466328999987303747885012345
Q gi|254780226|r 68 RMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKD 110 (367)
Q Consensus 68 ~i~~iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~~ 110 (367)
++++|.||-|--.. +.-..+|.+|..+.|||+-++
T Consensus 199 -~nilDTPGHVnF~D-------E~ta~l~~sDgvVlvvDv~EG 233 (971)
T KOG0468 199 -MNILDTPGHVNFSD-------ETTASLRLSDGVVLVVDVAEG 233 (971)
T ss_pred -EEEECCCCCCCCHH-------HHHHHHHHCCEEEEEEECCCC
T ss_conf -55525887555068-------888886523637999982257
No 300
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.40 E-value=0.043 Score=33.91 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=27.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCH
Q ss_conf 48675288878889999874048987366686744883379976855
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDP 50 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~ 50 (367)
++||+|...+|||||++++.+.- +|..|.+.+-..
T Consensus 49 ~vaIvG~sGsGKSTL~~ll~gl~------------~p~~G~I~idg~ 83 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMV------------DIFDGKIVIDGI 83 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC------------CCCCCEEEECCE
T ss_conf 99999999981999999996056------------678888999989
No 301
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.37 E-value=0.043 Score=33.86 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=27.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
++||||...+||||+++.+.+.- .|..|.+.+..
T Consensus 42 ~vaIvG~sGsGKSTL~~ll~gl~------------~p~~G~I~idg 75 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFY------------QPQGGQVLLDG 75 (226)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 99999999984999999996454------------67887899999
No 302
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.29 E-value=0.047 Score=33.59 Aligned_cols=14 Identities=21% Similarity=-0.002 Sum_probs=5.5
Q ss_pred HHCCCCEEEEECCH
Q ss_conf 10348369997368
Q gi|254780226|r 315 DFEKGFIRALTISY 328 (367)
Q Consensus 315 Di~kgFi~A~v~~~ 328 (367)
.+.+|=..|+|.++
T Consensus 363 ~i~~Ge~vaiVG~S 376 (575)
T PRK11160 363 QIKAGEKVALLGRT 376 (575)
T ss_pred EECCCCEEEEECCC
T ss_conf 97699889998899
No 303
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.27 E-value=0.057 Score=33.03 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=26.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|.-.+|||||++.++|.. ...|..|.+.+..
T Consensus 28 i~~iiGpnGaGKSTLl~~i~G~~----------~~~~~~G~I~~~g 63 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHP----------KYEVTEGEILFKG 63 (200)
T ss_pred EEEEECCCCCCHHHHHHHHCCCC----------CCCCCCCEEEECC
T ss_conf 99999689999999999970777----------7785200799999
No 304
>KOG0462 consensus
Probab=94.24 E-value=0.087 Score=31.81 Aligned_cols=114 Identities=27% Similarity=0.326 Sum_probs=68.4
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCH-HHHHHHHH-----CCCCEEEE---EEEEEEECC
Q ss_conf 8675288878889999874048987366686744883379976855-58777642-----18650233---579998512
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDP-RMHKLAEI-----AESKDLVP---TRMSFVDIA 75 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~-~~~~l~~~-----~~~~~~~p---~~i~~iDva 75 (367)
++||--=--||||+--.|-+.. .||++|.+.-.+-|. .+.+.-.+ ..+-.+.+ -.+.++|.|
T Consensus 63 fsIIAHVDHGKSTLaDrLLe~t---------g~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTP 133 (650)
T KOG0462 63 FSIIAHVDHGKSTLADRLLELT---------GTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTP 133 (650)
T ss_pred EEEEEEECCCCCHHHHHHHHHH---------CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEECCC
T ss_conf 3799984277016899999982---------8778887556642454456652847875123799975873288750589
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCC----------------CCCCCCCCC-CCHHHHHHHHHHH
Q ss_conf 2354322246632899998730374788501234542----------------113457767-3215788988887
Q gi|254780226|r 76 GLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKDEN----------------IIHVEGRID-PINDIETIETELM 134 (367)
Q Consensus 76 GLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~----------------v~~~~g~~D-P~~Di~~i~~EL~ 134 (367)
|-|-- ++++-.-+.-||..|.||||+..-. ++.+-+.+| |-.|.+.++..+.
T Consensus 134 GHvDF-------s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~ 202 (650)
T KOG0462 134 GHVDF-------SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLF 202 (650)
T ss_pred CCCCC-------CCEEHEHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 85555-------4100012653571599997676812889999999998597488865315789889899999999
No 305
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.23 E-value=0.052 Score=33.34 Aligned_cols=15 Identities=13% Similarity=0.027 Sum_probs=5.5
Q ss_pred CCHHCCCCEEEEECC
Q ss_conf 121034836999736
Q gi|254780226|r 313 HTDFEKGFIRALTIS 327 (367)
Q Consensus 313 HtDi~kgFi~A~v~~ 327 (367)
.=++.+|=..|+|.+
T Consensus 355 sl~i~~Ge~vaiVG~ 369 (585)
T PRK13657 355 SFEAKPGQTVAIVGP 369 (585)
T ss_pred EEEECCCCEEEEECC
T ss_conf 389759988999889
No 306
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.23 E-value=0.037 Score=34.29 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=9.8
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 486752888788899998740
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~ 24 (367)
++||||...+||||+++.+.+
T Consensus 370 ~vaiVG~SGsGKSTL~~LL~g 390 (581)
T PRK11176 370 TVALVGRSGSGKSTIANLLTR 390 (581)
T ss_pred EEECCCCCCCCHHHHHHHHHH
T ss_conf 431228999867899999985
No 307
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=94.22 E-value=0.049 Score=33.50 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=20.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
-+||+|-..+||||++++++|.
T Consensus 34 i~~iiG~nGaGKSTLl~~i~G~ 55 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999888998899999998567
No 308
>CHL00071 tufA elongation factor Tu
Probab=94.22 E-value=0.12 Score=30.82 Aligned_cols=89 Identities=24% Similarity=0.282 Sum_probs=46.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCC---CCCCCC-----CCCEEEE-ECCCHHHHHHHHHCCCCEEEEEEEEEEE
Q ss_conf 248675288878889999874048987366---686744-----8833799-7685558777642186502335799985
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAAN---YPFCTI-----EPNSGEV-AVPDPRMHKLAEIAESKDLVPTRMSFVD 73 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~---ypFtTi-----~pn~g~~-~v~d~~~~~l~~~~~~~~~~p~~i~~iD 73 (367)
+.|+++|==.+||||+-.+||.. ....+. ..|--+ +-..|+. .+ -...+...+ -.+.++|
T Consensus 13 vni~~~GHVD~GKSTL~g~L~~~-~~~~~~~~~~~~~~~D~~~eEr~rGiTid~-------~~~~~et~~---~~~~~iD 81 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMT-LAANGGAKGKKYDEIDSAPEEKARGITINT-------AHVEYETEN---RHYAHVD 81 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH-HHHCCCHHHHHHHHCCCCHHHHHCCCEEEE-------CEEEEECCC---EEEEEEE
T ss_conf 99999954588399999998645-300451334315532379768736944880-------248996287---5999986
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 122354322246632899998730374788501234
Q gi|254780226|r 74 IAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 74 vaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
+|| |+ -.-..-+.=+.++|+-+.||+|.+
T Consensus 82 ~PG-----H~--~fv~nmi~Gas~aD~alLVV~A~~ 110 (409)
T CHL00071 82 CPG-----HA--DYVKNMITGAAQMDGAILVVSAAD 110 (409)
T ss_pred CCC-----HH--HHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 796-----78--999998752301581289998687
No 309
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=94.20 E-value=0.3 Score=28.23 Aligned_cols=86 Identities=23% Similarity=0.313 Sum_probs=46.2
Q ss_pred CEEEEEECCCCCHHHHHHHHH---CCCCC-----------CCCCCCCCCCCCCEEEEECCCHHHHH--------HH-HHC
Q ss_conf 248675288878889999874---04898-----------73666867448833799768555877--------76-421
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALT---RTASA-----------QAANYPFCTIEPNSGEVAVPDPRMHK--------LA-EIA 59 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT---~~~~~-----------~~~~ypFtTi~pn~g~~~v~d~~~~~--------l~-~~~ 59 (367)
++|+++|-=.+||||+.-+|. |.-.. +.+.-+| ..+.+-|...+- ++ ..+
T Consensus 8 l~i~~~GhVD~GKSTL~G~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~-------~~a~~~D~~~eEr~rGiTid~~~~~f 80 (426)
T PRK12317 8 LNLAVIGHVDHGKSTLVGRLLYETGAVDEHIIEEYEEEAKKKGKESF-------KFAWVMDRLKEERERGVTIDLAHKKF 80 (426)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC-------EEEEECCCCHHHHHCCCEEEEEEEEE
T ss_conf 49999952287688887689877299448999999989986487752-------14321257866875582788316999
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHH----HHHHCCCEEEEEECCCC
Q ss_conf 865023357999851223543222466328999----98730374788501234
Q gi|254780226|r 60 ESKDLVPTRMSFVDIAGLVRGASKGEGLGNQFL----AHIREVDAIIHVLRCFK 109 (367)
Q Consensus 60 ~~~~~~p~~i~~iDvaGLv~gA~~G~GlGN~FL----~~ir~aDalihVVdaf~ 109 (367)
...+ -.+.++|+|| |+ +|+ .-+.+||+-+.||||-+
T Consensus 81 ~~~~---~~~~iiD~PG-----H~------~fi~nmi~Gas~~D~ailvV~A~~ 120 (426)
T PRK12317 81 ETDK---YYFTIIDCPG-----HR------DFVKNMITGASQADAAVLVVSARD 120 (426)
T ss_pred ECCC---CEEEEEECCC-----CH------HHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 5498---1699987896-----36------678778745346772799996365
No 310
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.20 E-value=0.042 Score=33.96 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=9.4
Q ss_pred CCCCHHCCCCEEEEECCH
Q ss_conf 001210348369997368
Q gi|254780226|r 311 VIHTDFEKGFIRALTISY 328 (367)
Q Consensus 311 ~IHtDi~kgFi~A~v~~~ 328 (367)
-|.=++.+|=.-|+|.++
T Consensus 368 ~is~~i~~Ge~vaIVG~S 385 (588)
T PRK11174 368 PLNFTLPAGQRVALVGPS 385 (588)
T ss_pred CEEEEECCCCEEEEECCC
T ss_conf 646997499789998999
No 311
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.19 E-value=0.051 Score=33.38 Aligned_cols=33 Identities=30% Similarity=0.550 Sum_probs=26.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
-+||+|...+||||+++.+.+.- .|..|.+.+.
T Consensus 35 ~~~iiG~nGsGKSTLl~~l~Gll------------~P~sG~V~i~ 67 (286)
T PRK13641 35 FVALIGHTGSGKSTLMQHFNALL------------KPSSGKITIA 67 (286)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 99999999839999999996598------------9885499999
No 312
>KOG0394 consensus
Probab=94.17 E-value=0.22 Score=29.06 Aligned_cols=150 Identities=23% Similarity=0.292 Sum_probs=84.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCE--EEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCC
Q ss_conf 82486752888788899998740489873666867448833--7997685558777642186502335799985122354
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNS--GEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVR 79 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~--g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~ 79 (367)
.+|+=|.|=|.||||+|.|..+. .. -.+--|.||-.-- -.+.|.| |. +++|+-|.||
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~-~k--F~~qykaTIgadFltKev~Vd~-------------~~--vtlQiWDTAG--- 67 (210)
T KOG0394 9 LLKVIILGDSGVGKTSLMNQYVN-KK--FSQQYKATIGADFLTKEVQVDD-------------RS--VTLQIWDTAG--- 67 (210)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HH--HHHHHCCCCCCEEEEEEEEECC-------------EE--EEEEEEECCC---
T ss_conf 35999937998447899999988-88--8887432000110322799867-------------69--9999873311---
Q ss_pred CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 32224663289999873037478850123454211345776732157889888876433222457777787520320467
Q gi|254780226|r 80 GASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEI 159 (367)
Q Consensus 80 gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~ 159 (367)
+-+=+.||-.| -|.+|..+.|-|.-.. .-.+.++-+..|++
T Consensus 68 -QERFqsLg~aF---YRgaDcCvlvydv~~~----------~Sfe~L~~Wr~EFl------------------------- 108 (210)
T KOG0394 68 -QERFQSLGVAF---YRGADCCVLVYDVNNP----------KSFENLENWRKEFL------------------------- 108 (210)
T ss_pred -HHHHHHCCCCE---ECCCCEEEEEECCCCH----------HHHCCHHHHHHHHH-------------------------
T ss_conf -77763146411---2477547898326864----------66511878999998-------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCC-CHHHHHHHHHHHHHC-CCCC
Q ss_conf 77899999889988758741034431326777621023576410100100343011101-013467877886436-9840
Q gi|254780226|r 160 VLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKK-GNIYTEAVQRLASQQ-NAEM 237 (367)
Q Consensus 160 ~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~-~n~~~e~i~~l~~~~-~~~~ 237 (367)
.. -.| + +. ...|.+++.||.|.+..+ .-.-.++...|+.++ +..+
T Consensus 109 -------~q-------a~~-~------~P------------e~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipy 155 (210)
T KOG0394 109 -------IQ-------ASP-Q------DP------------ETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPY 155 (210)
T ss_pred -------HH-------CCC-C------CC------------CCCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHCCCCEE
T ss_conf -------74-------687-9------97------------756679975511477775012018899999986599506
Q ss_pred CCCCCHH
Q ss_conf 3321002
Q gi|254780226|r 238 IIISAAI 244 (367)
Q Consensus 238 i~isa~~ 244 (367)
.-.||+-
T Consensus 156 fEtSAK~ 162 (210)
T KOG0394 156 FETSAKE 162 (210)
T ss_pred EEECCCC
T ss_conf 8710243
No 313
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.16 E-value=0.051 Score=33.36 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=26.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
-+||+|.-.+||||||+.++|.- .|+.|.+.+.
T Consensus 29 i~~l~G~NGaGKSTLlkli~Gl~------------~p~~G~I~~~ 61 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL------------NPEKGEILFE 61 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 99998899987999999997785------------8898569999
No 314
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.14 E-value=0.051 Score=33.37 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=25.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|.-.+||||++++++|.. .|..|.+.+-
T Consensus 29 ~~liG~nGaGKSTLl~~i~Gl~------------~p~~G~I~~~ 60 (222)
T cd03224 29 VALLGRNGAGKTTLLKTIMGLL------------PPRSGSIRFD 60 (222)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 9999999985999999997798------------8996099999
No 315
>KOG0054 consensus
Probab=94.13 E-value=0.052 Score=33.34 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=28.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 82486752888788899998740489873666867448833799768
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
++.+++||...+|||+|.+|+.|--. .... .+..|-.+++||
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm~-~~sG----~v~v~gs~aYv~ 588 (1381)
T KOG0054 547 GQLVAVVGPVGSGKSSLLSAILGEMP-KLSG----SVAVNGSVAYVP 588 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CCCC----EEEECCEEEEEC
T ss_conf 98899989998888999999965875-5675----599847489866
No 316
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.10 E-value=0.069 Score=32.49 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=12.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
++||||.-.+|||||++.++|.
T Consensus 347 ~ialvG~NGsGKSTLlk~l~G~ 368 (632)
T PRK11147 347 KIALIGPNGCGKTTLLKLMLGQ 368 (632)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999889884277999986066
No 317
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.049 Score=33.47 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=27.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-++|+|-..+||||+++.++|.. +|..|.+.+-+
T Consensus 30 ~~~iiGpSGsGKSTll~~i~Gl~------------~p~~G~I~~~g 63 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE------------RPDSGTILFGG 63 (239)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99999999977999999997699------------99863999999
No 318
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=94.10 E-value=0.054 Score=33.22 Aligned_cols=33 Identities=24% Similarity=0.532 Sum_probs=25.8
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
+||+|.-.+||||+++.++|.. .|..|.+.+.+
T Consensus 32 ~~liGpNGaGKSTLl~~i~Gl~------------~~~~G~I~i~g 64 (241)
T PRK10895 32 VGLLGPNGAGKTTTFYMVVGIV------------PRDAGNIIIDD 64 (241)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 9998899986999999996788------------88876277634
No 319
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.08 E-value=0.05 Score=33.43 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEECCCCCHHHHHHHHHCCC
Q ss_conf 8675288878889999874048
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTA 26 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~ 26 (367)
+||+|--.+|||||++.++|.-
T Consensus 29 ~gLiGpNGaGKSTLlk~i~Gll 50 (255)
T cd03236 29 LGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999970999999996798
No 320
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.05 E-value=0.053 Score=33.28 Aligned_cols=32 Identities=41% Similarity=0.650 Sum_probs=25.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|.-.+||||++++++|.. .|..|.+.+.
T Consensus 29 ~gliG~nGaGKSTL~~~i~Gl~------------~p~~G~I~~~ 60 (236)
T cd03219 29 HGLIGPNGAGKTTLFNLISGFL------------RPTSGSVLFD 60 (236)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 9999899973999999996798------------7883189999
No 321
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=94.05 E-value=0.34 Score=27.85 Aligned_cols=76 Identities=29% Similarity=0.526 Sum_probs=49.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC-----CCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCC
Q ss_conf 248675288878889999874048987366686-----744883379976855587776421865023357999851223
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPF-----CTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGL 77 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypF-----tTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGL 77 (367)
|=||-.|-=--||||+-.||||.. ..-.|= =||| .|.++.+.| ++ ..+-||||||
T Consensus 1 ~IigTAGHVDHGKTsLvkALTG~d---tDRL~EEk~RGiTId--LGFA~~~l~---------~g-----~~~g~VDVPG- 60 (615)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVN---ADRLPEEKKRGMTID--LGYAYWPQP---------DG-----RVLGFIDVPG- 60 (615)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CCCCHHHHHHCCEEE--ECEEEEECC---------CC-----CEEEEEECCC-
T ss_conf 989963654778999999986888---656977897187277--130755579---------99-----7899987998-
Q ss_pred CCCCCCCCCCHHHHHHH----HHCCCEEEEEECCC
Q ss_conf 54322246632899998----73037478850123
Q gi|254780226|r 78 VRGASKGEGLGNQFLAH----IREVDAIIHVLRCF 108 (367)
Q Consensus 78 v~gA~~G~GlGN~FL~~----ir~aDalihVVdaf 108 (367)
|| +|+.+ +...|+.+.||.|-
T Consensus 61 ----HE------rFIknMlAG~~gid~vlLVVAAd 85 (615)
T PRK10512 61 ----HE------KFLSNMLAGVGGIDHALLVVACD 85 (615)
T ss_pred ----HH------HHHHHHHHHHHHCCEEEEEEECC
T ss_conf ----38------99999974464378899999889
No 322
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.03 E-value=0.063 Score=32.76 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=27.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 24867528887888999987404898736668674488337997685
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-.+||+|...+||||+++.+.+.- .|..|.+.+-.
T Consensus 29 ~~vaIvG~sGsGKSTLl~ll~gl~------------~p~~G~i~i~g 63 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL------------RPTSGRVRLDG 63 (173)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 999999999980999999996666------------67999899999
No 323
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.01 E-value=0.054 Score=33.19 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=25.1
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 8675288878889999874048987366686744883379976
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
+||+|.-.+||||+++.++|.- .|..|.+.+
T Consensus 34 ~gllG~NGaGKSTllk~i~Gl~------------~p~~G~i~i 64 (218)
T cd03266 34 TGLLGPNGAGKTTTLRMLAGLL------------EPDAGFATV 64 (218)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEE
T ss_conf 9999999984999999997797------------789748999
No 324
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.051 Score=33.38 Aligned_cols=33 Identities=30% Similarity=0.626 Sum_probs=26.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
+||+|...+||||+++.+.|.. +|..|.+.+-.
T Consensus 26 ~~iiGpSGsGKSTll~~i~GL~------------~p~sG~I~~~G 58 (214)
T cd03297 26 TGIFGASGAGKSTLLRCIAGLE------------KPDGGTIVLNG 58 (214)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 9999999735999999998499------------99964999999
No 325
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.96 E-value=0.061 Score=32.83 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=25.1
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|.-.+||||+++.++|.. .|..|.+.+-
T Consensus 31 ~~llG~NGaGKSTLl~~i~Gl~------------~p~~G~I~i~ 62 (220)
T cd03263 31 FGLLGHNGAGKTTTLKMLTGEL------------RPTSGTAYIN 62 (220)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCCCEEEC
T ss_conf 9999899973999999996698------------7889977999
No 326
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.96 E-value=0.05 Score=33.43 Aligned_cols=34 Identities=44% Similarity=0.576 Sum_probs=26.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|...+|||||++.++|.. .|+-|.+.+-+
T Consensus 32 ~~~iiG~sGsGKTTll~~i~Gl~------------~p~~G~I~~~g 65 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD------------RPTSGEVRVDG 65 (218)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99999999986999999996699------------99964999999
No 327
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=93.94 E-value=0.079 Score=32.11 Aligned_cols=32 Identities=38% Similarity=0.647 Sum_probs=27.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 48675288878889999874048987366686744883379976
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
+++|+|...+||||+.|+|-|.. +|.-|.+.|
T Consensus 380 ~vAl~G~SGaGKSTLL~lLLGf~------------~P~~G~i~v 411 (570)
T TIGR02857 380 RVALVGPSGAGKSTLLNLLLGFV------------EPTEGAIVV 411 (570)
T ss_pred EEEEEECCCCCHHHHHHHHHCCC------------CCCCCEEEE
T ss_conf 48886279997889999997157------------644646887
No 328
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.92 E-value=0.044 Score=33.82 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
-+||+|...+|||||+++++|.
T Consensus 35 ~~~ilGpnGsGKSTLl~~i~G~ 56 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999989996099999999678
No 329
>KOG0057 consensus
Probab=93.91 E-value=0.047 Score=33.62 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=7.6
Q ss_pred EEEEEECCCCCHHHHHHHHH
Q ss_conf 48675288878889999874
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALT 23 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT 23 (367)
|+||||.+.+||||+.++|=
T Consensus 380 kVaIvG~nGsGKSTilr~Ll 399 (591)
T KOG0057 380 KVAIVGSNGSGKSTILRLLL 399 (591)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89897899987889999999
No 330
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.86 E-value=0.063 Score=32.75 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 48675288878889999874048
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTA 26 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~ 26 (367)
.+||+|.-.+||||++++++|.-
T Consensus 32 i~~LiGpNGaGKSTLlk~I~Gl~ 54 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999899988999999996688
No 331
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.83 E-value=0.065 Score=32.66 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=26.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
.+||+|...+|||||++.++|.- .|..|.+.+.
T Consensus 35 ~~~i~G~sGsGKSTLlk~i~gl~------------~p~~G~I~~~ 67 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLI------------SPTSGTLLFE 67 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 99999999999999999996466------------8887659999
No 332
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.81 E-value=0.063 Score=32.74 Aligned_cols=32 Identities=44% Similarity=0.685 Sum_probs=25.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 48675288878889999874048987366686744883379976
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
-+||+|...+||||+++.++|... |..|.+.+
T Consensus 50 ivgilG~NGaGKSTLl~~i~Gl~~------------p~~G~I~i 81 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIYP------------PDSGTVTV 81 (224)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEE
T ss_conf 999997999819999999975877------------78776999
No 333
>PRK12736 elongation factor Tu; Reviewed
Probab=93.81 E-value=0.12 Score=30.85 Aligned_cols=78 Identities=28% Similarity=0.440 Sum_probs=46.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCC-----CCCCCC-----------CCCCCCEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf 248675288878889999874048987-----366686-----------7448833799768555877764218650233
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQ-----AANYPF-----------CTIEPNSGEVAVPDPRMHKLAEIAESKDLVP 66 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~-----~~~ypF-----------tTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p 66 (367)
+.||++|==.+||||+-.+||+. ..+ ...|-. -||+ +|.++. ...+
T Consensus 13 ~ni~~~GHVD~GKSTL~g~L~~~-~~~~~~~~~~~~~~~D~~~eEr~rGiTid--~~~~~~------------~t~~--- 74 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKV-LAERGLAQAKDYASIDAAPEEKARGITIN--TAHVEY------------ETEK--- 74 (394)
T ss_pred EEEEEEEECCCCHHHHHHHHHHH-HHHCCCCHHHHHHHHCCCHHHHCCCCEEE--EEEEEE------------ECCC---
T ss_conf 49999951288489899897504-54506510222233116655624782178--418999------------7288---
Q ss_pred EEEEEEECCCCCCCCCCCCCCHHHHHHH----HHCCCEEEEEECCCC
Q ss_conf 5799985122354322246632899998----730374788501234
Q gi|254780226|r 67 TRMSFVDIAGLVRGASKGEGLGNQFLAH----IREVDAIIHVLRCFK 109 (367)
Q Consensus 67 ~~i~~iDvaGLv~gA~~G~GlGN~FL~~----ir~aDalihVVdaf~ 109 (367)
-.+.++|+|| |+ +|+.+ ..++|+-+.||+|.+
T Consensus 75 ~~~~~iD~PG-----H~------~fi~nmi~Ga~~~D~alLVV~A~~ 110 (394)
T PRK12736 75 RHYAHVDCPG-----HA------DYVKNMITGAAQMDGAILVVAATD 110 (394)
T ss_pred EEEEEEECCC-----CH------HHHCCEEEEECCCCEEEEEEECCC
T ss_conf 3699988897-----25------431104443534665899998587
No 334
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=93.80 E-value=0.056 Score=33.11 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=22.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 982486752888788899998740
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~ 24 (367)
|-|+|||.|...+||||+-+.+..
T Consensus 1 ~m~~IgiTG~igsGKStv~~~l~~ 24 (199)
T PRK00081 1 MMLIIGLTGGIGSGKSTVANIFAE 24 (199)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 978999578887779999999998
No 335
>PRK13544 consensus
Probab=93.78 E-value=0.066 Score=32.63 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=26.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
.+||+|.-.+||||++++++|.. .|..|.+.+-
T Consensus 29 i~~l~G~NGsGKSTLl~~i~Gl~------------~p~~G~I~~~ 61 (208)
T PRK13544 29 LTLVIGNNGSGKTSLLRLLAGLI------------PITHGNIKYN 61 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 99999999998999999995880------------6897489999
No 336
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.75 E-value=0.066 Score=32.63 Aligned_cols=32 Identities=34% Similarity=0.621 Sum_probs=25.1
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|.-.+||||+++.++|.. .|..|.+.+-
T Consensus 29 ~gl~G~NGaGKSTLl~~i~Gl~------------~p~~G~i~i~ 60 (173)
T cd03230 29 YGLLGPNGAGKTTLIKIILGLL------------KPDSGEIKVL 60 (173)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 9998789979999999997685------------7787889999
No 337
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=93.75 E-value=0.049 Score=33.49 Aligned_cols=33 Identities=27% Similarity=0.552 Sum_probs=25.8
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
+||+|.-.+|||||+++++|.. | |..|.+.+..
T Consensus 34 ~~liG~nGaGKSTL~~~l~G~~-------~-----~~~G~i~~~g 66 (510)
T PRK09700 34 HALLGENGAGKSTLMKVLSGIH-------E-----PTKGTITINN 66 (510)
T ss_pred EEEECCCCCHHHHHHHHHHCCC-------C-----CCCEEEEECC
T ss_conf 9998999972999999983799-------8-----9856999999
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.74 E-value=0.073 Score=32.34 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 4867528887888999987404898
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASA 28 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~ 28 (367)
-+||+|-..+|||||++.++|.-.+
T Consensus 27 iv~ilGpNGaGKSTllk~i~G~l~p 51 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999899999999999999688678
No 339
>pfam04317 DUF463 YcjX-like family, DUF463. Some members of this family are thought to possess an ATP-binding domain towards their N-terminus.
Probab=93.73 E-value=0.16 Score=30.01 Aligned_cols=33 Identities=18% Similarity=0.448 Sum_probs=25.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCC---CCCCCC
Q ss_conf 2486752888788899998740489873---666867
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQA---ANYPFC 36 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~---~~ypFt 36 (367)
+++|+.|+..+|||-|.+++.. ..-.. ++.|+=
T Consensus 1 ~RlgVTGLSrsGKTvFITsLv~-~Ll~~~~~~~lp~f 36 (443)
T pfam04317 1 VRLAVTGLSRAGKTAFITSLVN-QLLHGGNGGRLPLF 36 (443)
T ss_pred CEEEEECCCCCCCCHHHHHHHH-HHHHCCCCCCCCCC
T ss_conf 9367732577875007999999-99714567888652
No 340
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.71 E-value=0.064 Score=32.71 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=26.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-++|+|-..+||||+++.+.|.. .|..|.+.+..
T Consensus 27 ~~~iiGpSGsGKSTLlr~i~Gl~------------~p~~G~I~~~G 60 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFI------------KPDSGKILLNG 60 (235)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99999999635999999997499------------99965999999
No 341
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.70 E-value=0.065 Score=32.66 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=26.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
.+||+|...+||||+++.++|.- .|..|.+.+-
T Consensus 27 ~v~iiG~nGaGKSTLl~~i~Gll------------~p~sG~I~i~ 59 (233)
T PRK10771 27 QVAILGPSGAGKSTLLNLIAGFL------------TPASGSLLIN 59 (233)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 99999999981999999996599------------9985599999
No 342
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.68 E-value=0.063 Score=32.74 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=25.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|.-.+||||+|++++|... |..|.+.+-
T Consensus 31 ~~liGpNGaGKSTLl~~i~Gl~~------------p~~G~I~~~ 62 (242)
T TIGR03411 31 RVIIGPNGAGKTTMMDVITGKTR------------PDEGSVLFG 62 (242)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC------------CCCEEEEEC
T ss_conf 99998999759999999967957------------885599999
No 343
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.68 E-value=0.058 Score=32.99 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=26.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|...+||||+++.++|.. .|..|.+.+..
T Consensus 38 ~v~ivG~sGsGKSTLl~~i~Gl~------------~p~~G~I~~~G 71 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLD------------DGSSGEVSLVG 71 (228)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99999999858999999996699------------99967999999
No 344
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=93.65 E-value=0.18 Score=29.67 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=36.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC-----E----EEEECCCHHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 8248675288878889999874048987366686744883-----3----799768555877764218650233579998
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPN-----S----GEVAVPDPRMHKLAEIAESKDLVPTRMSFV 72 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn-----~----g~~~v~d~~~~~l~~~~~~~~~~p~~i~~i 72 (367)
.+.+=++|-.+.|||||||.|-+... +.+..+-.+.|+ + -.+.+.+ .-++.++.++
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l--~~~~~~~~~~~~~~~~~~~i~~~~~~l~e-------------~~~~~~l~vI 87 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSL--VDETEIDDIRAEGTSPTLEIKITKAELEE-------------DGFHLNLTVI 87 (373)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCEEEEEEEEEEEC-------------CCEEEEEEEE
T ss_conf 63899962788755578876567652--57777557666667762588864316604-------------8748988886
Q ss_pred ECCCC
Q ss_conf 51223
Q gi|254780226|r 73 DIAGL 77 (367)
Q Consensus 73 DvaGL 77 (367)
|+||-
T Consensus 88 DtpGf 92 (373)
T COG5019 88 DTPGF 92 (373)
T ss_pred CCCCC
T ss_conf 15886
No 345
>PRK04004 translation initiation factor IF-2; Validated
Probab=93.63 E-value=0.41 Score=27.25 Aligned_cols=88 Identities=25% Similarity=0.334 Sum_probs=62.6
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHC----CCCEEEEEEEEEEECCCCCCC
Q ss_conf 8675288878889999874048987366686744883379976855587776421----865023357999851223543
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIA----ESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~----~~~~~~p~~i~~iDvaGLv~g 80 (367)
|-+.|-=-.|||||+-++-++ .++.-....|-.++|...||-+...+.+... +-+-.+| .|-|+|.||
T Consensus 8 vtimGHVDhGKTsLLD~iR~t---~V~~~EaGGITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ip-gllfiDTPG---- 79 (592)
T PRK04004 8 VVVLGHVDHGKTTLLDKIRGT---AVAAKEAGGITQHIGATEVPIDVIEKIAGPLVKRLPLKLKIP-GLLFIDTPG---- 79 (592)
T ss_pred EEEECCCCCCHHHHHHHHHCC---CCCCCCCCCCCCEECEEEECCCCHHHHCCCCCCCCCCCCCCC-CCEEECCCC----
T ss_conf 999787377763689998628---773555776232306598412310110344334433234567-755765996----
Q ss_pred CCCCCCCHHHHHHHHH-----CCCEEEEEECCC
Q ss_conf 2224663289999873-----037478850123
Q gi|254780226|r 81 ASKGEGLGNQFLAHIR-----EVDAIIHVLRCF 108 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir-----~aDalihVVdaf 108 (367)
-+-...+| -||..|.|||+-
T Consensus 80 --------HeaFt~mR~RGa~vtDiaILVVa~~ 104 (592)
T PRK04004 80 --------HEAFSNLRKRGGALADIAILVVDIN 104 (592)
T ss_pred --------HHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf --------5999999973674578899999778
No 346
>PRK08356 hypothetical protein; Provisional
Probab=93.62 E-value=0.056 Score=33.08 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 82486752888788899998740
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~ 24 (367)
+|=|||+|+|.+||||+-+-+-.
T Consensus 5 kmIIgitG~~gSGK~tva~~l~~ 27 (195)
T PRK08356 5 KMIVGIAGKIAAGKTTVAKFLEE 27 (195)
T ss_pred EEEEEEECCCCCCHHHHHHHHHH
T ss_conf 26999858998878999999998
No 347
>PRK00007 elongation factor G; Reviewed
Probab=93.61 E-value=0.26 Score=28.62 Aligned_cols=89 Identities=19% Similarity=0.168 Sum_probs=52.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE----CCCHH---HHHHHHH-----CCCCEEEEEEEEE
Q ss_conf 4867528887888999987404898736668674488337997----68555---8777642-----1865023357999
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVA----VPDPR---MHKLAEI-----AESKDLVPTRMSF 71 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~----v~d~~---~~~l~~~-----~~~~~~~p~~i~~ 71 (367)
.|||+|---+|||||--++--.+ .+-+. .|.+. +-|.+ -.+--.+ .-.|+- ..+|.|
T Consensus 12 Ni~IiaHvd~GKTTL~e~lL~~s--g~i~~--------~G~v~~g~t~~D~~~~E~eRgITI~s~~~s~~~~~-~~~iNl 80 (693)
T PRK00007 12 NIGIMAHIDAGKTTTTERILFYT--GVSHK--------IGEVHDGAATMDWMEQEQERGITITSAATTCFWKD-GHRINI 80 (693)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC--CCCCC--------CCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECC-CEEEEE
T ss_conf 99999169999899999999966--98465--------84243898556782889976988732225488269-738999
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 851223543222466328999987303747885012345
Q gi|254780226|r 72 VDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKD 110 (367)
Q Consensus 72 iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~~ 110 (367)
+|.||-+--.+ +.-..+|=||.-+.||||.+.
T Consensus 81 IDTPGHvDF~~-------Ev~~aLrv~DgAvlVvDav~G 112 (693)
T PRK00007 81 IDTPGHVDFTI-------EVERSLRVLDGAVAVFCAVGG 112 (693)
T ss_pred EECCCCCCHHH-------HHHHHHHHHCEEEEEEECCCC
T ss_conf 91979752489-------999999985868999988988
No 348
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.61 E-value=0.054 Score=33.21 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=26.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|...+|||||+++++|. ....|.-|.+.+..
T Consensus 34 i~aiiG~nGsGKSTL~~~i~G~----------~~~~~~~G~I~~~G 69 (252)
T CHL00131 34 IHAIMGPNGSGKSTLSKVIAGH----------PAYTVLEGDILFKG 69 (252)
T ss_pred EEEEECCCCCCHHHHHHHHCCC----------CCCCCCCCEEEECC
T ss_conf 9999999999999999997278----------76676642599877
No 349
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.59 E-value=0.072 Score=32.35 Aligned_cols=32 Identities=44% Similarity=0.613 Sum_probs=24.9
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|.-.+|||||+++++|.- .|..|.+.+.
T Consensus 31 ~~liGpNGaGKSTLlk~i~Gl~------------~p~~G~I~~~ 62 (257)
T PRK13548 31 VAILGPNGAGKSTLLRALSGEL------------PPSSGEVRLF 62 (257)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEEE
T ss_conf 9999999987999999985675------------7787569993
No 350
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=93.59 E-value=0.35 Score=27.72 Aligned_cols=94 Identities=23% Similarity=0.294 Sum_probs=50.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCC-----CCCCCCCEEEEE-----CCC---HHHH-----------HHHHH
Q ss_conf 24867528887888999987404898736668-----674488337997-----685---5587-----------77642
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYP-----FCTIEPNSGEVA-----VPD---PRMH-----------KLAEI 58 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~yp-----FtTi~pn~g~~~-----v~d---~~~~-----------~l~~~ 58 (367)
+-||.+|-=.-|||||-.|||+. .. ..|+ --||+ .|++. |++ |... .+..|
T Consensus 38 vNIGtiGHVDHGKTTLvkALTgv-~t--~r~~eE~~RgiTI~--LGya~~kiykc~~~~~p~~y~~~~s~~~~~~~c~~c 112 (460)
T PTZ00327 38 INIGTIGHVAHGKSTVVKALSGV-KT--VRFHREKVRNITIK--LGYANAKIYKCTKCPPPACYKSYPSSKPDNPQCPGC 112 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC-CH--HHCHHHHHCCCEEE--ECCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 18988746289899999998677-50--10656787587212--054330111365677631010146666555445555
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 186502335799985122354322246632899998730374788501234
Q gi|254780226|r 59 AESKDLVPTRMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 59 ~~~~~~~p~~i~~iDvaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
..... .--.+-++|.|| |+ -+=.--|+-....|+-|.||.|-+
T Consensus 113 ~~~~t-~~Rh~s~VDcPG-----H~--~l~~nmi~Ga~~mD~aiLvvaa~e 155 (460)
T PTZ00327 113 GHKMT-LKRHVSFVDCPG-----HD--ILMATMLNGAAVMDAALLLIAANE 155 (460)
T ss_pred CCCCC-CCEEEEEEECCC-----HH--HHHHHHHHCHHHCCEEEEEEECCC
T ss_conf 65431-220489986898-----79--999998747633767999998688
No 351
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.57 E-value=0.068 Score=32.54 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 486752888788899998740489
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTAS 27 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~ 27 (367)
-+||+|.-.+||||+++.++|...
T Consensus 40 iv~LiG~nGaGKSTLlr~i~Gl~~ 63 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999998998889999999965898
No 352
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=93.57 E-value=0.6 Score=26.14 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=47.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCC-------------------CCCCCCCCC----CC------CEEEEECCCHHH
Q ss_conf 8248675288878889999874048987-------------------366686744----88------337997685558
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQ-------------------AANYPFCTI----EP------NSGEVAVPDPRM 52 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~-------------------~~~ypFtTi----~p------n~g~~~v~d~~~ 52 (367)
.+.|+++|-=.+||||+..+|.- ..-. .-.|.|.+- |- ++|..+.
T Consensus 7 ~lni~~~GhVD~GKSTL~G~Ll~-~~~~v~~~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rGiTid~~~~~f----- 80 (449)
T PTZ00336 7 HMNLVVVGHVDAGKSTATGHLIY-KCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAERERGITIDIALWKF----- 80 (449)
T ss_pred EEEEEEEECCCCCHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEE-----
T ss_conf 43999992778968888999998-748847899999999998718751432545127722322875898679999-----
Q ss_pred HHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHH----HHHCCCEEEEEECCCCC
Q ss_conf 77764218650233579998512235432224663289999----87303747885012345
Q gi|254780226|r 53 HKLAEIAESKDLVPTRMSFVDIAGLVRGASKGEGLGNQFLA----HIREVDAIIHVLRCFKD 110 (367)
Q Consensus 53 ~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~GlGN~FL~----~ir~aDalihVVdaf~~ 110 (367)
..++ -.+.++|+|| | .+|+. -+.++|+-|.||||...
T Consensus 81 ------~t~~----~~~~iiD~PG-----H------~~fi~nmi~Gas~aD~aiLVVdA~~G 121 (449)
T PTZ00336 81 ------ESPK----SVFTIIDAPG-----H------RDFIKNMITGTSQADAAILMIDSTHG 121 (449)
T ss_pred ------ECCC----EEEEEEECCC-----H------HHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf ------7498----4899986894-----6------88899999765006767999987877
No 353
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.56 E-value=0.08 Score=32.06 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 24867528887888999987404
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~ 25 (367)
=+++|+|...+||||+++++.|.
T Consensus 28 e~v~i~G~sGsGKSTLl~~l~Gl 50 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHCCC
T ss_conf 99999958999889999998698
No 354
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.56 E-value=0.13 Score=30.71 Aligned_cols=33 Identities=36% Similarity=0.617 Sum_probs=26.1
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
.||+|-..+||||+++.++|.. .|.-|.+.+..
T Consensus 34 ~gllG~NGAGKTTllk~l~Gl~------------~p~~G~i~i~G 66 (293)
T COG1131 34 FGLLGPNGAGKTTLLKILAGLL------------KPTSGEILVLG 66 (293)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 9998999998999999996797------------78864999958
No 355
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=93.54 E-value=0.083 Score=31.96 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=8.7
Q ss_pred EEEEECCCCCHHHHHHHHHC
Q ss_conf 86752888788899998740
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~ 24 (367)
+||||.-.+|||||++.++|
T Consensus 341 iaIvG~NGsGKSTLlk~L~G 360 (638)
T PRK10636 341 IGLLGRNGAGKSTLIKLLAG 360 (638)
T ss_pred EEEECCCCCCHHHHHHHHCC
T ss_conf 99974787138899999728
No 356
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.53 E-value=0.078 Score=32.15 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=26.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|.-.+|||||++.++|.- .|..|.+.+..
T Consensus 28 i~~iiG~nGaGKSTLl~~i~Gl~------------~p~~G~I~~~g 61 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI------------KESSGSILLNG 61 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 99998899998999999995685------------77787389999
No 357
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.50 E-value=0.069 Score=32.48 Aligned_cols=32 Identities=28% Similarity=0.674 Sum_probs=25.2
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|.-.+|||||++.++|.- .|.-|.+.+.
T Consensus 28 v~liGpNGaGKSTLlk~l~Gll------------~p~~G~I~~~ 59 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVL------------KPDEGDIEIE 59 (246)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 9999799976999999997787------------8886079989
No 358
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.48 E-value=0.075 Score=32.24 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=20.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 48675288878889999874048
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTA 26 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~ 26 (367)
-+||+|.-.+||||+++.+++..
T Consensus 39 ~~~liG~NGaGKSTLl~~l~gl~ 61 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999980999999995688
No 359
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.47 E-value=0.079 Score=32.09 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=25.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|.-.+|||||++.++|... |..|.+.+..
T Consensus 28 ~~~l~G~NGsGKSTLlk~i~Gl~~------------p~sG~i~~~g 61 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLSP------------PLAGRVLLNG 61 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC------------CCCEEEEECC
T ss_conf 999999999999999999966778------------8852999999
No 360
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.43 E-value=0.11 Score=31.03 Aligned_cols=39 Identities=33% Similarity=0.459 Sum_probs=27.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|...+|||||++.++++-... .-.|..|.+.+..
T Consensus 28 ~~~iiG~SGsGKSTll~~i~gL~~~~-------~~~p~~G~I~~~g 66 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLNDLI-------PGAPDEGEVLLDG 66 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCC-------CCCCCCEEEEECC
T ss_conf 99999999981999999997445026-------8998146999999
No 361
>KOG1249 consensus
Probab=93.41 E-value=0.052 Score=33.31 Aligned_cols=45 Identities=40% Similarity=0.496 Sum_probs=32.1
Q ss_pred EEEEECCCCCHHHHHHHHHCCCC-----------CCCCCCCCCCCCCCEEEEECCC
Q ss_conf 86752888788899998740489-----------8736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTAS-----------AQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~-----------~~~~~ypFtTi~pn~g~~~v~d 49 (367)
+=++|-.|+||||+||+++.+.. |-+.+.|=|||.|+.=-+-+|-
T Consensus 216 f~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtlsllkfpv~~p~ 271 (572)
T KOG1249 216 FYLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTTLSLLKFPVLVPH 271 (572)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCC
T ss_conf 44321000240367888764112445656204442013687320342007400456
No 362
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.40 E-value=0.079 Score=32.10 Aligned_cols=32 Identities=31% Similarity=0.543 Sum_probs=25.4
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|...+||||+++++++.. .|..|.+.+-
T Consensus 34 ~~iiG~sGsGKSTLl~~i~gl~------------~p~~G~I~~~ 65 (257)
T PRK10619 34 ISIIGSSGSGKSTFLRCINFLE------------KPSEGSIVVN 65 (257)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 9999899981999999996599------------9998189999
No 363
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.39 E-value=0.09 Score=31.71 Aligned_cols=33 Identities=42% Similarity=0.514 Sum_probs=25.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
+||+|.-.+||||+++.++|.- .|.-|.+.+.+
T Consensus 30 ~~iiG~nGaGKSTLlk~i~Gl~------------~p~~G~I~~~g 62 (211)
T cd03225 30 VLIVGPNGSGKSTLLRLLNGLL------------GPTSGEVLVDG 62 (211)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCCCEEECC
T ss_conf 9998899998999999996467------------79888778999
No 364
>PRK13542 consensus
Probab=93.36 E-value=0.081 Score=32.02 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=25.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 48675288878889999874048987366686744883379976
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
.+||+|.-.+||||||+.++|.- .|..|.+.+
T Consensus 46 i~~liGpNGaGKTTLlk~l~Gll------------~p~~G~I~~ 77 (224)
T PRK13542 46 LLQVMGPNGSGKTSLLRVLSGLM------------PPAEGDLYW 77 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEE
T ss_conf 99999999999999999995797------------888528999
No 365
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.33 E-value=0.088 Score=31.78 Aligned_cols=34 Identities=35% Similarity=0.418 Sum_probs=26.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
.+||+|-..+||||+++++.|. +.|..|.+.+.+
T Consensus 54 ~vaIIG~nGsGKSTL~~~l~Gl------------l~p~~G~I~i~~ 87 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGL------------IKSKYGTIQVGD 87 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHCC------------CCCCCCEEEECC
T ss_conf 9999949998499999999758------------889983599865
No 366
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.31 E-value=0.087 Score=31.82 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=26.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|.-.+||||+++.++|.. .|..|.+.+..
T Consensus 33 i~~liG~NGaGKSTLl~~i~G~~------------~~~~G~I~~~G 66 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDP------------RATSGRIVFDG 66 (237)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99998799975999999996799------------88962899999
No 367
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.30 E-value=0.084 Score=31.92 Aligned_cols=32 Identities=41% Similarity=0.582 Sum_probs=25.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 48675288878889999874048987366686744883379976
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
.+||+|...+||||+++.+.|.. .|..|.+.+
T Consensus 28 ~~~iiG~SGsGKSTll~~i~gL~------------~p~~G~I~~ 59 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL------------RPDSGEVLI 59 (235)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEE
T ss_conf 99999999972999999997599------------989858999
No 368
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=93.30 E-value=0.09 Score=31.71 Aligned_cols=13 Identities=15% Similarity=-0.015 Sum_probs=4.9
Q ss_pred HHCCCCEEEEECC
Q ss_conf 1034836999736
Q gi|254780226|r 315 DFEKGFIRALTIS 327 (367)
Q Consensus 315 Di~kgFi~A~v~~ 327 (367)
+|.+|=.-|++..
T Consensus 487 ~i~~Ge~vaIvG~ 499 (694)
T TIGR03375 487 TIRPGEKVAIIGR 499 (694)
T ss_pred EECCCCEEEEEEC
T ss_conf 8879978999805
No 369
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.29 E-value=0.077 Score=32.16 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=26.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
+||+|...+||||+++.+.+.. .|..|.+.+-+
T Consensus 30 ~~iiGpsGsGKSTLl~~i~gl~------------~p~~G~I~~~g 62 (241)
T cd03256 30 VALIGPSGAGKSTLLRCLNGLV------------EPTSGSVLIDG 62 (241)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 9999999833999999997499------------99855999999
No 370
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.26 E-value=0.7 Score=25.70 Aligned_cols=173 Identities=14% Similarity=0.211 Sum_probs=80.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
.+||||-..+||||+.+++.+... |..|.+.+.. .|+.++
T Consensus 43 ~lgiVGeSGsGKSTL~~~l~gl~~------------p~~G~I~~~G----------------------~dl~~~------ 82 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLTMIET------------PTGGELYYQG----------------------QDLLKA------ 82 (327)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCC------------CCCCEEEECC----------------------EECCCC------
T ss_conf 999999983199999999956999------------8863799899----------------------955779------
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
..+-+..+|+- |.+| |.| +..+.||..-+...-.|-.... ..+.+..... ...
T Consensus 83 ----~~~~~~~~r~~---i~~V--fQ~-----p~~sLnP~~~v~~~l~e~l~~~-----~~~~~~~~~~--------~~~ 135 (327)
T PRK11308 83 ----DPEAQKLLRRK---VQIV--FQN-----PYGSLNPRKKVGQILEEPLLIN-----TSLSAAERRE--------KAL 135 (327)
T ss_pred ----CHHHHHHHHCC---EEEE--EEC-----CHHHCCHHHHHHHHHHHHHHHC-----CCCCHHHHHH--------HHH
T ss_conf ----99999997557---7999--868-----6343380342434335778861-----4899999999--------999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCC--HHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999889988758741034431326777621023576410100100343--01110101346787788643698403321
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVS--EHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~--e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
+++... .|..+ .+..++.+++--+...+.=.+-+..+|-++++--- -.|........+.+.++..+.+..+++++
T Consensus 136 ~~L~~v--gL~~~-~~~ryP~eLSGGq~QRv~IArAL~~~P~lLi~DEPTsaLD~~~q~~Il~ll~~l~~~~~~t~l~IT 212 (327)
T PRK11308 136 AMMAKV--GLRPE-HYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFIS 212 (327)
T ss_pred HHHHHC--CCCHH-HHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 999870--45665-664576447999999999999984289899984786546999999999999999970097699986
Q ss_pred CHHHH
Q ss_conf 00246
Q gi|254780226|r 242 AAIEA 246 (367)
Q Consensus 242 a~~E~ 246 (367)
=.+..
T Consensus 213 HDl~~ 217 (327)
T PRK11308 213 HDLSV 217 (327)
T ss_pred CCHHH
T ss_conf 98999
No 371
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=93.25 E-value=0.065 Score=32.66 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=17.2
Q ss_pred EEEEECCCCCHHHHHHHHHCC
Q ss_conf 867528887888999987404
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~ 25 (367)
|=|.|-|.||||||.||+.+.
T Consensus 161 Iii~GGTgSGKTTf~kal~~~ 181 (328)
T TIGR02788 161 IIISGGTGSGKTTFLKALVKE 181 (328)
T ss_pred EEEEECCCCHHHHHHHHHHHC
T ss_conf 999906897189999999732
No 372
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.24 E-value=0.088 Score=31.77 Aligned_cols=32 Identities=28% Similarity=0.606 Sum_probs=25.9
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|--.+||||+|+.+||.. .|..|.+.+-
T Consensus 29 ~~llGpNGAGKSTll~~i~Gl~------------~p~~G~I~~~ 60 (232)
T cd03218 29 VGLLGPNGAGKTTTFYMIVGLV------------KPDSGKILLD 60 (232)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 9999999961999999997799------------9986299999
No 373
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=93.24 E-value=0.085 Score=31.88 Aligned_cols=27 Identities=48% Similarity=0.637 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 824867528887888999987404898
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASA 28 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~ 28 (367)
+=+|||..-|.||||||...+..++.|
T Consensus 153 GQRiGIFA~aG~GKSTLL~~i~~g~~A 179 (430)
T TIGR02546 153 GQRIGIFAGAGVGKSTLLGMIARGASA 179 (430)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 530578708886166899998618988
No 374
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.24 E-value=0.089 Score=31.76 Aligned_cols=33 Identities=42% Similarity=0.510 Sum_probs=26.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
.+||+|...+||||+++.++|.- .|+.|.+.+.
T Consensus 30 ~vaiiG~nGsGKSTL~~~l~Gll------------~P~~G~I~v~ 62 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLL------------RPQKGKVLVS 62 (274)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 99999999980999999997068------------5888729999
No 375
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.23 E-value=0.091 Score=31.69 Aligned_cols=33 Identities=36% Similarity=0.494 Sum_probs=25.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
-+||+|.-.+||||+++.++|.- .|..|.+.+.
T Consensus 27 ~~~liGpNGaGKSTllk~i~Gl~------------~p~~G~i~i~ 59 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL------------KPTSGSIRVF 59 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 99999999986999999997687------------8897589999
No 376
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.23 E-value=0.067 Score=32.60 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=20.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
-+||+|.+.+||||++++++|.
T Consensus 37 i~~ilGpnGaGKSTLl~~l~Gl 58 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999989995199999998577
No 377
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.22 E-value=0.087 Score=31.81 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=26.9
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
+||+|--.+||||+|+.++|.. .|..|.+.+.+
T Consensus 29 ~~liGpNGaGKSTL~~~i~Gl~------------~p~~G~I~~~G 61 (230)
T TIGR03410 29 TCVLGRNGVGKTTLLKTLMGLL------------PVKSGSIRLDG 61 (230)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 9999999940999999997799------------99954999999
No 378
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.21 E-value=0.081 Score=32.03 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=25.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
-++|+|...+|||||.+.+.+.. .|..|.+.+-
T Consensus 26 ~~~i~GpSGsGKSTLL~~i~gl~------------~p~sG~i~~~ 58 (206)
T TIGR03608 26 MVAIVGESGSGKSTLLNIIGLLE------------KPDSGQVYLN 58 (206)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 99998799970999999997599------------9897599999
No 379
>PRK12739 elongation factor G; Reviewed
Probab=93.20 E-value=0.3 Score=28.21 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=54.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE----CCCHHHHHHHH---HC---CCCEEEEEEEEEEE
Q ss_conf 4867528887888999987404898736668674488337997----68555877764---21---86502335799985
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVA----VPDPRMHKLAE---IA---ESKDLVPTRMSFVD 73 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~----v~d~~~~~l~~---~~---~~~~~~p~~i~~iD 73 (367)
.|||+|---+|||||--+|-- ..-.+. . .|.+. +-|.+-+-... +. -+-.+-...|.|+|
T Consensus 12 Ni~IvaHvd~GKTTL~d~LL~-~~g~i~-~--------~g~v~~g~~~~D~~~~E~eRgITi~ss~~s~~~~~~~iNLID 81 (693)
T PRK12739 12 NIGIMAHIDAGKTTTTERILF-YTGKIH-K--------IGEVHDGAATMDWMEQEQERGITITSAATTAFWKDHRINIID 81 (693)
T ss_pred EEEEEECCCCCHHHHHHHHHH-HCCCCC-C--------CCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCEEEEEEE
T ss_conf 999990799898999999999-769856-5--------733438975687809998759867455277845998999994
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 1223543222466328999987303747885012345
Q gi|254780226|r 74 IAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKD 110 (367)
Q Consensus 74 vaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~~ 110 (367)
.||-|--.+ ++-..+|=||.-+.||||.+.
T Consensus 82 TPGHvDF~~-------EV~~alrv~DgalvvVDaveG 111 (693)
T PRK12739 82 TPGHVDFTI-------EVERSLRVLDGAVAVFDAVSG 111 (693)
T ss_pred CCCCCHHHH-------HHHHHHHHHCEEEEEEECCCC
T ss_conf 969740589-------999999984879999978988
No 380
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.20 E-value=0.09 Score=31.70 Aligned_cols=89 Identities=9% Similarity=0.110 Sum_probs=45.3
Q ss_pred HCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCC-----CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH---------
Q ss_conf 1326777621023576410100100343011101-----01346787788643698403321002466552---------
Q gi|254780226|r 185 SLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKK-----GNIYTEAVQRLASQQNAEMIIISAAIEAEISQ--------- 250 (367)
Q Consensus 185 ~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~-----~n~~~e~i~~l~~~~~~~~i~isa~~E~ei~~--------- 250 (367)
.++--+...+.=..-+..+|-++++- .+.+. .....+.+.++..+.+..++.++-.++....+
T Consensus 141 ~LSGGqkqRvaIA~aLa~~P~iLlLD---EPTagLDp~~~~~i~~ll~~l~~e~g~TiilvtHd~~~v~~~aDrvivl~~ 217 (285)
T PRK13636 141 CLSFGQKKRVAIAGVLVMEPKVLVLD---EPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKE 217 (285)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEEC
T ss_conf 19999999999999997499899997---875559999999999999999984498999994889999996999999989
Q ss_pred ------CCCHH---HHHHHHHCCCCCCCHHHHHHH
Q ss_conf ------88426---778877538874228999999
Q gi|254780226|r 251 ------LPEEE---RALFMEELDISISGLELLIRS 276 (367)
Q Consensus 251 ------l~~ee---~~e~l~~~~l~~tgl~~li~~ 276 (367)
-+.+| +.+.|+..++..+-+-++...
T Consensus 218 G~iv~~G~p~evf~~~~~l~~~~l~~P~~~~l~~~ 252 (285)
T PRK13636 218 GRVILQGNPKEVFAEKEMLRKVNLRLPRIGHLMEI 252 (285)
T ss_pred CEEEEECCHHHHHCCHHHHHHCCCCCCCHHHHHHH
T ss_conf 98999869999966999999779999969999999
No 381
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.20 E-value=0.076 Score=32.21 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 86752888788899998740489
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTAS 27 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~ 27 (367)
++|+|...||||||+|.+.+...
T Consensus 34 vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999989999999964667
No 382
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.20 E-value=0.09 Score=31.72 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=26.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
.+||+|...+||||+++.++|. ..|..|.+.+..
T Consensus 37 ~vaiiG~sGsGKSTLl~ll~Gl------------~~p~~G~I~~~g 70 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGI------------EKVKSGEIFYNN 70 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHCC------------CCCCCEEEEECC
T ss_conf 9999999999799999999649------------799850999999
No 383
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=93.19 E-value=0.067 Score=32.57 Aligned_cols=32 Identities=38% Similarity=0.678 Sum_probs=27.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 48675288878889999874048987366686744883379976
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
++.|||-..+||||+|+.|=.- =||..|.+.+
T Consensus 368 tvAlVGPSGAGKSTlf~LLLRF------------YDP~~G~ilL 399 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRF------------YDPQSGRILL 399 (576)
T ss_pred EEEEECCCCCHHHHHHHHHHHC------------CCCCCCEEEE
T ss_conf 5887668876279999999860------------4888765774
No 384
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.16 E-value=0.094 Score=31.58 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=25.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
-+||+|.-.+|||||++.++|.. .|..|.+.+.
T Consensus 29 ~~~l~G~NGaGKSTLl~~l~Gl~------------~p~~G~i~~~ 61 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA------------RPDAGEVLWQ 61 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 99999999985999999997688------------8887379999
No 385
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.16 E-value=0.11 Score=31.00 Aligned_cols=33 Identities=36% Similarity=0.541 Sum_probs=26.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
.+||+|--.+||||+++.+.|.- .|..|.+.+.
T Consensus 30 ~vaiiG~nGsGKSTLl~~l~Gll------------~P~~G~I~v~ 62 (275)
T PRK13639 30 MIAILGPNGAGKSTLFLHFNGIL------------KPSSGSVLIK 62 (275)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 99999999964999999997398------------9996399999
No 386
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.16 E-value=0.067 Score=32.60 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 48675288878889999874048
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTA 26 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~ 26 (367)
-+||+|.-.+||||++++++|.-
T Consensus 29 ~~aliG~nGaGKSTLl~~i~G~l 51 (273)
T PRK13547 29 VTALLGRNGAGKSTLLKVLAGEL 51 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999976999999995678
No 387
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.14 E-value=0.092 Score=31.66 Aligned_cols=34 Identities=35% Similarity=0.509 Sum_probs=26.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|...+||||+++.++|.. .|..|.+.+-.
T Consensus 37 ~v~iiG~sGsGKSTLl~~i~Gl~------------~p~~G~I~~~g 70 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD------------TPTSGDVIFNG 70 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99999999940999999996699------------99863999999
No 388
>PRK07560 elongation factor EF-2; Reviewed
Probab=93.13 E-value=0.47 Score=26.89 Aligned_cols=92 Identities=21% Similarity=0.242 Sum_probs=53.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHH---H-----HH--HHCCCCEEEEEEEEEEE
Q ss_conf 48675288878889999874048987366686744883379976855587---7-----76--42186502335799985
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMH---K-----LA--EIAESKDLVPTRMSFVD 73 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~---~-----l~--~~~~~~~~~p~~i~~iD 73 (367)
.|||+|--.+|||||--++--.+. .|.. ..-|-..+-|-... + .+ .++..++-....|.|+|
T Consensus 22 NI~IiaHvdaGKTTLtE~lL~~sg-~i~~-------~~~~~~t~~D~~~~E~eRgITI~sa~~sl~~~~~~~~~~INlID 93 (730)
T PRK07560 22 NIGIVAHIDHGKTTLSDNLLAGAG-MISE-------ELAGKQLALDYDEEEQARGITIKAANVSMVHEYEGKEYLINLID 93 (730)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CCCC-------CCCCCCEECCCHHHHHHCCCCEEECCEEEEEEECCCCEEEEEEC
T ss_conf 899993799898999999999649-9865-------34798641788599997298575211028987569837899981
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 1223543222466328999987303747885012345
Q gi|254780226|r 74 IAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKD 110 (367)
Q Consensus 74 vaGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~~ 110 (367)
.||-+--. .+.-..+|=+|.-+.||||...
T Consensus 94 TPGh~DF~-------~Ev~~aLrv~DgAvvVvdav~G 123 (730)
T PRK07560 94 TPGHVDFG-------GDVTRAMRAVDGAIVVVDAVEG 123 (730)
T ss_pred CCCCCHHH-------HHHHHHHHHHCEEEEEEECCCC
T ss_conf 96973059-------9999999885878999978988
No 389
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=93.13 E-value=0.099 Score=31.45 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=26.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-++|+|-..+||||+++.++|.. .|..|.+.+-+
T Consensus 31 ~~~llGpsG~GKSTllr~i~Gl~------------~p~~G~I~i~g 64 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLE------------DITSGDLFIGE 64 (369)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99999999736999999997799------------99954999999
No 390
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.12 E-value=0.093 Score=31.62 Aligned_cols=35 Identities=34% Similarity=0.549 Sum_probs=26.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 24867528887888999987404898736668674488337997685
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+++|+|...+||||+++.+.|.- .|..|.+.+..
T Consensus 29 e~~aivG~sGsGKSTLl~~l~G~~------------~p~~G~i~i~g 63 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL------------KPQQGEITLDG 63 (178)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCC------------CCCCCEEEECC
T ss_conf 999999999875999999998617------------66788699999
No 391
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.11 E-value=0.091 Score=31.69 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=26.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
+||+|.-.+||||+|+.++|.- .|..|.+.+..
T Consensus 29 ~gllG~NGaGKTTll~~i~Gl~------------~p~~G~i~i~G 61 (210)
T cd03269 29 FGLLGPNGAGKTTTIRMILGII------------LPDSGEVLFDG 61 (210)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 9999899984999999996002------------66899899999
No 392
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.10 E-value=0.075 Score=32.24 Aligned_cols=23 Identities=52% Similarity=0.790 Sum_probs=20.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 82486752888788899998740
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~ 24 (367)
+..|||.|-|.+|||||..+|..
T Consensus 51 a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCEEEECCCCCCCHHHHHHHHHH
T ss_conf 83787317998866889999999
No 393
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.10 E-value=0.094 Score=31.59 Aligned_cols=31 Identities=29% Similarity=0.595 Sum_probs=24.9
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 8675288878889999874048987366686744883379976
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
+||+|-..+||||+++.++|.- .|..|.+.+
T Consensus 37 ~~iiGpnGsGKSTLlk~i~Gl~------------~p~~G~I~~ 67 (269)
T PRK11831 37 TAIMGPSGIGKTTLLRLIGGQI------------APDHGEILF 67 (269)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEE
T ss_conf 9999399975999999996798------------889866999
No 394
>PTZ00243 ABC transporter; Provisional
Probab=93.09 E-value=0.099 Score=31.44 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=18.8
Q ss_pred EEEEECCCCCHHHHHHHHHC
Q ss_conf 86752888788899998740
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~ 24 (367)
++|||.-.+|||||.+|+-|
T Consensus 689 ~~IvG~vGSGKSSLL~aiLG 708 (1560)
T PTZ00243 689 TVVLGATGSGKSTLLQSLLS 708 (1560)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
No 395
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.08 E-value=0.1 Score=31.33 Aligned_cols=32 Identities=38% Similarity=0.586 Sum_probs=25.1
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|.-.+||||+++.++|... |.-|.+.+.
T Consensus 29 ~~lvG~nGaGKSTl~~~i~Gl~~------------p~~G~i~i~ 60 (163)
T cd03216 29 HALLGENGAGKSTLMKILSGLYK------------PDSGEILVD 60 (163)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC------------CCCCEEEEC
T ss_conf 99998899899999999957768------------985789999
No 396
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.08 E-value=0.094 Score=31.60 Aligned_cols=34 Identities=35% Similarity=0.490 Sum_probs=26.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
.+||+|...+|||||++.++|.- .|..|.+.+..
T Consensus 38 ~vaivG~nGsGKSTLlk~l~Gll------------~p~~G~I~v~G 71 (273)
T PRK13632 38 YVAILGHNGSGKSTISKILTGLL------------KPQSGEIKIFG 71 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 99999999986999999997387------------78887599999
No 397
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.07 E-value=0.076 Score=32.20 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 486752888788899998740
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~ 24 (367)
.+||+|...+|||||++.+++
T Consensus 35 ~~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999837
No 398
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.04 E-value=0.091 Score=31.70 Aligned_cols=31 Identities=42% Similarity=0.650 Sum_probs=25.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 8675288878889999874048987366686744883379976
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
+||+|.-.+||||+++.++|.- .|..|.+.+
T Consensus 50 ~gLlGpNGaGKSTllk~l~Gl~------------~p~~G~I~v 80 (236)
T cd03267 50 VGFIGPNGAGKTTTLKILSGLL------------QPTSGEVRV 80 (236)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEE
T ss_conf 9999999830999999996494------------887159999
No 399
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.01 E-value=0.1 Score=31.41 Aligned_cols=32 Identities=34% Similarity=0.580 Sum_probs=25.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|.-.+||||+|+.++|.- .|..|.+.+.
T Consensus 29 ~gllGpNGAGKSTll~~i~Gl~------------~p~~G~i~i~ 60 (220)
T cd03265 29 FGLLGPNGAGKTTTIKMLTTLL------------KPTSGRATVA 60 (220)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 9999999871999999997697------------8896289999
No 400
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.01 E-value=0.099 Score=31.45 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=26.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|.-.+|||||++++.|... |..|.+.+.+
T Consensus 30 i~~l~G~NGaGKTTLlk~i~Gl~~------------p~~G~I~~~g 63 (206)
T PRK13539 30 ALVLTGPNGSGKTTLLRLLAGLLP------------PAAGTIKLDG 63 (206)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC------------CCCEEEEECC
T ss_conf 999989999989999999958878------------8851899999
No 401
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.01 E-value=0.097 Score=31.50 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=26.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|.-.+|||||++.++|.. .|..|.+.+.+
T Consensus 28 i~~i~G~NGsGKSTLlk~i~Gl~------------~p~~G~I~~~~ 61 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM------------QPSSGNIYYKN 61 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99999999981999999996798------------89840899999
No 402
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.01 E-value=0.076 Score=32.20 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.4
Q ss_pred CC--CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 98--248675288878889999874048
Q gi|254780226|r 1 MG--FKCGIIGLPNVGKSTLFNALTRTA 26 (367)
Q Consensus 1 m~--~kiGlvG~pn~GKST~f~alT~~~ 26 (367)
|+ +.+-++|-|.|||||..+-+-+..
T Consensus 1 mk~~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 1 MKGRKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9975599997579887266999999877
No 403
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.00 E-value=0.096 Score=31.52 Aligned_cols=89 Identities=9% Similarity=0.147 Sum_probs=47.0
Q ss_pred HCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCC-----CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHC--------
Q ss_conf 1326777621023576410100100343011101-----013467877886436984033210024665528--------
Q gi|254780226|r 185 SLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKK-----GNIYTEAVQRLASQQNAEMIIISAAIEAEISQL-------- 251 (367)
Q Consensus 185 ~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~-----~n~~~e~i~~l~~~~~~~~i~isa~~E~ei~~l-------- 251 (367)
+++--+...+.=..-+...|-++++ |.+.+. .....+.+.++..+.+..++.++-.++......
T Consensus 150 ~LSGGqkqRVaiA~aLa~~P~iLil---DEPTagLDp~~~~~i~~ll~~L~~~~g~Tvi~vtHdm~~v~~~aDrviVm~~ 226 (289)
T PRK13645 150 ELSGGQKRRVALAGIIAMDGNTLVL---DEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHE 226 (289)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEEC
T ss_conf 0999999999999999639999999---5887648989999999999999995699999991599999997999999989
Q ss_pred -------CCHH---HHHHHHHCCCCCCCHHHHHHH
Q ss_conf -------8426---778877538874228999999
Q gi|254780226|r 252 -------PEEE---RALFMEELDISISGLELLIRS 276 (367)
Q Consensus 252 -------~~ee---~~e~l~~~~l~~tgl~~li~~ 276 (367)
+.+| +.++|+..++..+.+-++.+.
T Consensus 227 G~iv~~G~p~evf~~~~~l~~~~l~~P~~~~l~~~ 261 (289)
T PRK13645 227 GKVISIGSPFEIFSNQELLTKIEIDPPKLYQLMYK 261 (289)
T ss_pred CEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHH
T ss_conf 98999878899867999999779999859999999
No 404
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=92.99 E-value=0.075 Score=32.24 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=18.5
Q ss_pred EEEEEECCCCCHHHHHHHHHC
Q ss_conf 486752888788899998740
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~ 24 (367)
||.|.|.|.+||||+...+..
T Consensus 1 ki~ITG~pGvGKTTli~kv~~ 21 (168)
T pfam03266 1 RIFITGPPGVGKTTLVKKVIE 21 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 989978999889999999999
No 405
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=92.97 E-value=0.1 Score=31.42 Aligned_cols=33 Identities=39% Similarity=0.608 Sum_probs=25.6
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
+||+|.-.+||||++++++|.- .|..|.+.+-.
T Consensus 31 ~~liGpNGaGKSTLlk~i~Gl~------------~p~sG~I~i~g 63 (255)
T PRK11231 31 TALIGPNGCGKSTLLKCFARLL------------TPQSGTVFLGD 63 (255)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 9999999981999999997598------------88864899999
No 406
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.97 E-value=0.15 Score=30.30 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 48675288878889999874048
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTA 26 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~ 26 (367)
.+||+|.-.+||||+.+.++|.-
T Consensus 52 ~vGIIG~NGAGKSTLLKiIaGI~ 74 (549)
T PRK13545 52 IVGIVGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998899998999999996898
No 407
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=92.97 E-value=0.084 Score=31.93 Aligned_cols=34 Identities=38% Similarity=0.521 Sum_probs=26.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|.-.+|||||+++++|.. .|..|.+.+..
T Consensus 35 ~~~iiGpNGaGKSTLlk~i~Gll------------~p~~G~I~l~g 68 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLM------------TPAHGHVWLDG 68 (265)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99999998839999999997498------------88852999999
No 408
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=92.90 E-value=0.083 Score=31.94 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 48675288878889999874048
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTA 26 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~ 26 (367)
-+||+|.-.+||||++++++|.-
T Consensus 32 ~~~iiGpNGaGKSTLlk~i~Gll 54 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999899960999999997567
No 409
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=92.88 E-value=0.085 Score=31.88 Aligned_cols=36 Identities=33% Similarity=0.455 Sum_probs=26.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|...+|||||++.++|. .+| .|.-|.+.+..
T Consensus 29 i~~iiG~nGaGKSTLl~~i~G~-----~~~-----~~~~G~I~~~G 64 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGR-----EDY-----EVTGGTVTFKG 64 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCC-----CCCCCEEEECC
T ss_conf 9999999999999999998377-----556-----87523599999
No 410
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.86 E-value=0.096 Score=31.53 Aligned_cols=34 Identities=29% Similarity=0.574 Sum_probs=27.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|.-.+||||+++.++|.- .|..|.+.+-.
T Consensus 27 i~gllGpNGAGKSTll~~i~Gl~------------~p~sG~i~i~g 60 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT------------PPSSGTIRIDG 60 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 59999999823999999997596------------68962999999
No 411
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=92.86 E-value=0.11 Score=31.08 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
.+||||.-.+|||||+++++|.
T Consensus 31 ~~~LvG~NGaGKSTL~k~l~G~ 52 (490)
T PRK10938 31 SWAFVGSNGSGKSALARALAGE 52 (490)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999979997799999999569
No 412
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.85 E-value=0.094 Score=31.58 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=18.4
Q ss_pred EEEEECCCCCHHHHHHHHHC
Q ss_conf 86752888788899998740
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~ 24 (367)
+++||..|+|||||-..+..
T Consensus 4 i~ivG~snSGKTTLi~kli~ 23 (159)
T cd03116 4 IGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99996799999999999999
No 413
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=92.85 E-value=0.17 Score=29.81 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 248675288878889999874048
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTA 26 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~ 26 (367)
-+++|||...+||||+.+.|-+.=
T Consensus 412 ~t~AlVG~SGsGKSTii~LL~RfY 435 (1467)
T PTZ00265 412 KTYAFVGESGCGKSTILKLIERLY 435 (1467)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 779986688875667999996326
No 414
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=92.83 E-value=0.11 Score=31.08 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 48675288878889999874048
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTA 26 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~ 26 (367)
-+||+|...+||||+++++++..
T Consensus 29 ~~aliG~sGsGKSTLl~~l~gl~ 51 (248)
T PRK11264 29 VVAIIGPSGSGKTTLLRCINLLE 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999980999999997589
No 415
>PRK10908 cell division protein FtsE; Provisional
Probab=92.82 E-value=0.098 Score=31.45 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=26.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
-+||+|...+||||+++.++|.. .|..|.+.+-
T Consensus 30 ~~~liG~nGsGKSTLl~~i~Gl~------------~p~~G~i~~~ 62 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIE------------RPSAGKIWFS 62 (222)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 99999999807999999996599------------9986299999
No 416
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.82 E-value=0.11 Score=31.14 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=26.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
-+||+|...+||||+++++++.. .|..|.+.+..
T Consensus 27 ~~~i~G~nGaGKSTLl~~l~gl~------------~~~~G~i~~~g 60 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL------------KPTSGEILIDG 60 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 99998788999899999995884------------79962899999
No 417
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=92.81 E-value=0.12 Score=30.95 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=25.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 48675288878889999874048987366686744883379976
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
-+||+|...+|||||++.++|.- .|..|.+.+
T Consensus 35 ~v~IiG~nGsGKSTL~k~l~Gll------------~P~~G~V~~ 66 (304)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALL------------LPDTGTIEW 66 (304)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEE
T ss_conf 99998799985999999996699------------988716999
No 418
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.81 E-value=0.099 Score=31.44 Aligned_cols=34 Identities=35% Similarity=0.600 Sum_probs=26.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
.+||+|.-.+||||+++.++|.- .|..|.+.+..
T Consensus 32 ~~aliG~NGaGKSTLl~~i~Gll------------~p~~G~I~i~G 65 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFKHFNGIL------------KPTSGSVLIRG 65 (277)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99999999947999999996699------------99846999999
No 419
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.81 E-value=0.12 Score=30.94 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=26.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
.+||||-..+||||++++++|.- .|..|.+.+-
T Consensus 35 ~vaivG~nGsGKSTL~k~l~Gl~------------~p~~G~I~i~ 67 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLL------------LPEAGTITVG 67 (279)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 99999999965999999997288------------8889649999
No 420
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=92.80 E-value=0.083 Score=31.95 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
-+||+|.-.+||||++++++|.
T Consensus 25 ~v~iiGpNGaGKSTLlk~i~Gl 46 (245)
T PRK03695 25 ILHLVGPNGAGKSTLLARMAGL 46 (245)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999978994199999998466
No 421
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.79 E-value=0.11 Score=31.14 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=26.2
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
++|+|...+||||+++.+.|.. .|.-|.+.+-+
T Consensus 29 ~~iiGpSGsGKSTllr~i~Gl~------------~p~~G~I~~~g 61 (232)
T cd03300 29 FTLLGPSGCGKTTLLRLIAGFE------------TPTSGEILLDG 61 (232)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 9999999983999999997799------------99853999999
No 422
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=92.78 E-value=0.11 Score=31.19 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 48675288878889999874048
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTA 26 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~ 26 (367)
-+||+|...+||||++++++|..
T Consensus 29 ~~~liG~nGsGKSTll~~i~Gl~ 51 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999980999999996389
No 423
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.74 E-value=0.12 Score=30.92 Aligned_cols=34 Identities=38% Similarity=0.622 Sum_probs=26.8
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
.+||+|.-.+|||||+++++|.. +|..|.+.+.+
T Consensus 27 ~~~liG~nGsGKTTLl~~i~G~~------------~~~~G~I~~~g 60 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLL------------KPSSGEILLDG 60 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 99999899988999999995798------------99872899999
No 424
>KOG1489 consensus
Probab=92.74 E-value=0.079 Score=32.09 Aligned_cols=23 Identities=13% Similarity=0.171 Sum_probs=14.8
Q ss_pred HHHHHHHHHHCCCHHEECCCHHH
Q ss_conf 21023576410100100343011
Q gi|254780226|r 193 IFKSLNLLTAKPILYICNVSEHD 215 (367)
Q Consensus 193 ~l~~~~llt~KP~iivaNk~e~~ 215 (367)
.+.+|.|-|.+|-+=..|.+|..
T Consensus 222 kVa~YaFTTL~P~iG~v~yddf~ 244 (366)
T KOG1489 222 KVAHYAFTTLRPHIGTVNYDDFS 244 (366)
T ss_pred CCCCCCEEEECCCCCEEECCCCC
T ss_conf 54554203444641125135451
No 425
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=92.71 E-value=0.12 Score=30.94 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=25.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
.+||+|...+||||+++.+++.. .|..|.+.+-
T Consensus 30 ~~~iiG~nGaGKSTLl~~l~gl~------------~p~~G~i~i~ 62 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE------------MPRSGTLNIA 62 (242)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 99999999971999999996588------------8886089999
No 426
>TIGR00991 3a0901s02IAP34 GTP-binding protein; InterPro: IPR005688 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts.. The cytosolic region of Toc34 reveals 34% alpha-helical and 260eta-strand structure and is stabilized by intramolecular electrostatic interaction. Toc34 binds both chloroplast preproteins and isolated transit peptides in a guanosine triphosphate- (GTP-) dependent mechanism . ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=92.71 E-value=0.19 Score=29.51 Aligned_cols=87 Identities=21% Similarity=0.353 Sum_probs=52.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
++.|=+.|+-.+|||+..|.+.|-..+.+..|.--...|.. + .-.|. .-++.++|.|||++|.
T Consensus 39 ~lt~lvmGkGGvGksstvn~~~Ge~~~~~s~fqseG~rP~~--~--------------sr~r~-GftlniidtPGlieGG 101 (328)
T TIGR00991 39 SLTILVMGKGGVGKSSTVNSIIGERVAAVSAFQSEGLRPVL--V--------------SRTRA-GFTLNIIDTPGLIEGG 101 (328)
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHHEECCCCCCCCCEE--E--------------EECCC-CCEEEEECCCCCCCCC
T ss_conf 36788860687663101223332023200000025886326--6--------------51246-6157753278610153
Q ss_pred CCCCC---CHHHHHHHHHCCCEEEEEEC
Q ss_conf 22466---32899998730374788501
Q gi|254780226|r 82 SKGEG---LGNQFLAHIREVDAIIHVLR 106 (367)
Q Consensus 82 ~~G~G---lGN~FL~~ir~aDalihVVd 106 (367)
+=..- .=.+||=+ ...|+|++|=|
T Consensus 102 y~n~~a~~iik~fll~-~tidvllyvdr 128 (328)
T TIGR00991 102 YINDQAVNIIKRFLLD-KTIDVLLYVDR 128 (328)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 0337899999998853-12122100123
No 427
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=92.71 E-value=0.058 Score=32.99 Aligned_cols=35 Identities=34% Similarity=0.559 Sum_probs=29.0
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 8675288878889999874048987366686744883
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPN 41 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn 41 (367)
++++|.-|+||||+.+++-.. -...+|+-.||+-.
T Consensus 2 ~~i~G~k~SGKTtL~~~l~~~--L~~~Gy~V~~IKH~ 36 (165)
T TIGR00176 2 LQIVGYKNSGKTTLIERLVKA--LKARGYRVATIKHD 36 (165)
T ss_pred EEEEEECCCCHHHHHHHHHHH--HHCCCCCEEEEEEC
T ss_conf 378962588678999999999--97079950898608
No 428
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.65 E-value=0.099 Score=31.43 Aligned_cols=93 Identities=16% Similarity=0.219 Sum_probs=49.2
Q ss_pred HCCHHHHHHHHHHHHHHHCCCHHEECC--CHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHC-----------
Q ss_conf 132677762102357641010010034--3011101013467877886436984033210024665528-----------
Q gi|254780226|r 185 SLDSDAIPIFKSLNLLTAKPILYICNV--SEHDCKKGNIYTEAVQRLASQQNAEMIIISAAIEAEISQL----------- 251 (367)
Q Consensus 185 ~~~~de~~~l~~~~llt~KP~iivaNk--~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~E~ei~~l----------- 251 (367)
++|--+...+.=..-+..+|-++++-- +-.|........+.++++..+.+..++.++-.++......
T Consensus 144 ~LSGGqkQRvaiA~aL~~~P~iLllDEPTs~LDp~~~~~i~~~l~~L~~e~g~Tvi~vTHdl~~v~~~aDRvivl~~G~I 223 (287)
T PRK13637 144 ELSGGQKRRVAIAGVVAMEPKVLILDEPTAGLDPKGRDDILEKIKALHKEYNMTIILVSHSMEDVAKIADRIIVMNKGRC 223 (287)
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEE
T ss_conf 29988999999999998399999983886648999999999999999985098999995799999996999999989999
Q ss_pred ----CCHH---HHHHHHHCCCCCCCHHHHHHHH
Q ss_conf ----8426---7788775388742289999999
Q gi|254780226|r 252 ----PEEE---RALFMEELDISISGLELLIRSG 277 (367)
Q Consensus 252 ----~~ee---~~e~l~~~~l~~tgl~~li~~~ 277 (367)
+.+| +.+.|+..++..+.+..+.+.-
T Consensus 224 v~~Gtp~evf~~~~~l~~~~l~~P~~~~l~~~L 256 (287)
T PRK13637 224 ELQGTPREVFKEVDTLESIGLAVPQVTYLVRKL 256 (287)
T ss_pred EEECCHHHHHCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf 998788998769889987699999199999999
No 429
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.13 Score=30.71 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.7
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 486752888788899998740489
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTAS 27 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~ 27 (367)
+++|||...+||||+.|++-|...
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799988999978999999847577
No 430
>PRK10218 GTP-binding protein; Provisional
Probab=92.61 E-value=0.86 Score=25.09 Aligned_cols=91 Identities=23% Similarity=0.306 Sum_probs=53.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCC--CCCCCCCCCCCCC-----EEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCC
Q ss_conf 4867528887888999987404898--7366686744883-----37997685558777642186502335799985122
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASA--QAANYPFCTIEPN-----SGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAG 76 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~--~~~~ypFtTi~pn-----~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaG 76 (367)
-||||+---.||||+--++-..+.+ +...-.-++.|-| +|+.- .++. -+-.+-..+|.++|.||
T Consensus 7 NiaIIAHvDhGKTTL~d~lL~~tG~~~~~~~~~~~~mD~~~~ErERGITI--------~a~~-~~~~~~~~~iNiIDTPG 77 (607)
T PRK10218 7 NIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITI--------LAKN-TAIKWNDYRINIVDTPG 77 (607)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCEE--------EEEE-EEEEECCEEEEEECCCC
T ss_conf 48999756889889999999972898644541120147868898759726--------2304-89960878997865998
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 3543222466328999987303747885012345
Q gi|254780226|r 77 LVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKD 110 (367)
Q Consensus 77 Lv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~~ 110 (367)
-+-- |-++-.-+|-||..+.||||++.
T Consensus 78 H~DF-------~gEVeR~L~~~DGalLvVDA~eG 104 (607)
T PRK10218 78 HADF-------GGEVERVMSMVDSVLLVVDAFDG 104 (607)
T ss_pred CCCC-------HHHHHHHHHHCCEEEEEEECCCC
T ss_conf 5430-------14889789766848999978878
No 431
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.60 E-value=0.17 Score=29.83 Aligned_cols=38 Identities=37% Similarity=0.605 Sum_probs=29.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 86752888788899998740489873666867448833799768555877
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHK 54 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~ 54 (367)
++|+|.-.+||||+++++.+. +.|..|.+.+....+..
T Consensus 31 ~~iiGpNG~GKSTLLk~l~~~------------l~p~~G~V~l~g~~i~~ 68 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL------------LKPKSGEVLLDGKDIAS 68 (258)
T ss_pred EEEECCCCCCHHHHHHHHHCC------------CCCCCCEEEECCCCHHH
T ss_conf 999899888999999998656------------78888779999972454
No 432
>PRK13409 putative ATPase RIL; Provisional
Probab=92.54 E-value=0.2 Score=29.40 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=22.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 248675288878889999874048987
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQ 29 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~ 29 (367)
-.+||||-=.+||||+++.|+|.-.+.
T Consensus 100 ~v~GLiG~NGaGKST~lkILsG~l~Pn 126 (590)
T PRK13409 100 KVTGILGPNGIGKSTAVKILSGELIPN 126 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 789988999998999999995871488
No 433
>pfam04735 Baculo_helicase Baculovirus DNA helicase.
Probab=92.53 E-value=0.075 Score=32.26 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=8.0
Q ss_pred EECCCCCCCCCCCCCCHH
Q ss_conf 851223543222466328
Q gi|254780226|r 72 VDIAGLVRGASKGEGLGN 89 (367)
Q Consensus 72 iDvaGLv~gA~~G~GlGN 89 (367)
+|++-.||=-|- |-|||
T Consensus 151 i~i~~~IPL~hh-r~LGn 167 (1173)
T pfam04735 151 IDIGDYIPLIHN-RRLGN 167 (1173)
T ss_pred CCCCCCCCCCCC-CCCCC
T ss_conf 846777335677-74777
No 434
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=0.14 Score=30.45 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=25.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 248675288878889999874048987366686744883379976
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
=|+.|+|...+||||+++.+++.= +|+.|.+..
T Consensus 365 EkvAIlG~SGsGKSTllqLl~~~~------------~~~~G~i~~ 397 (573)
T COG4987 365 EKVAILGRSGSGKSTLLQLLAGAW------------DPQQGSITL 397 (573)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC------------CCCCCEEEE
T ss_conf 768887799987899999997235------------878873657
No 435
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.52 E-value=0.1 Score=31.37 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
.+||+|...+||||+++.++|.
T Consensus 35 i~~llG~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999989999889999998378
No 436
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.51 E-value=0.09 Score=31.72 Aligned_cols=32 Identities=38% Similarity=0.565 Sum_probs=25.1
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|.-.+||||++++++|.- .|..|.+.+-
T Consensus 29 ~~liG~nGaGKSTll~~l~G~~------------~p~~G~I~~~ 60 (182)
T cd03215 29 VGIAGLVGNGQTELAEALFGLR------------PPASGEITLD 60 (182)
T ss_pred EEEECCCCCCCCHHHHHHCCCC------------CCCCCEEEEC
T ss_conf 9998889999263778766986------------7887759999
No 437
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=92.43 E-value=0.14 Score=30.41 Aligned_cols=91 Identities=13% Similarity=0.202 Sum_probs=45.3
Q ss_pred HCCHHHHHHHHHHHHHHHCCCHHEECC--CHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHC-----------
Q ss_conf 132677762102357641010010034--3011101013467877886436984033210024665528-----------
Q gi|254780226|r 185 SLDSDAIPIFKSLNLLTAKPILYICNV--SEHDCKKGNIYTEAVQRLASQQNAEMIIISAAIEAEISQL----------- 251 (367)
Q Consensus 185 ~~~~de~~~l~~~~llt~KP~iivaNk--~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~E~ei~~l----------- 251 (367)
.++--+...+.=..-+..+|-++++-- +-.|........+.++++..+.+..++.++-.++... +.
T Consensus 145 ~LSGGqkQRvaiA~aLa~~P~iLilDEPTs~LDp~~~~~i~~~l~~l~~e~g~Tii~vTHdl~~~~-~aDrv~vm~~G~I 223 (281)
T PRK13633 145 LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAV-EADRIIVMDKGKV 223 (281)
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH-CCCEEEEEECCEE
T ss_conf 089859999999999985999999818734389899999999999999840989999867889997-3998999989999
Q ss_pred ----CCHH---HHHHHHHCCCCCCCHHHHHHH
Q ss_conf ----8426---778877538874228999999
Q gi|254780226|r 252 ----PEEE---RALFMEELDISISGLELLIRS 276 (367)
Q Consensus 252 ----~~ee---~~e~l~~~~l~~tgl~~li~~ 276 (367)
+.+| +.+.|+..++..+-+-++...
T Consensus 224 v~~G~p~evf~~~~~L~~~~l~~P~~~~l~~~ 255 (281)
T PRK13633 224 VMEGTPKEIFKEVEMMKKIGLDVPQVTELAYE 255 (281)
T ss_pred EEECCHHHHHCCHHHHHHCCCCCCCHHHHHHH
T ss_conf 99779999976988999779999919999999
No 438
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.39 E-value=0.11 Score=31.04 Aligned_cols=92 Identities=12% Similarity=0.166 Sum_probs=47.8
Q ss_pred HCCHHHHHHHHHHHHHHHCCCHHEECC--CHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHC-----------
Q ss_conf 132677762102357641010010034--3011101013467877886436984033210024665528-----------
Q gi|254780226|r 185 SLDSDAIPIFKSLNLLTAKPILYICNV--SEHDCKKGNIYTEAVQRLASQQNAEMIIISAAIEAEISQL----------- 251 (367)
Q Consensus 185 ~~~~de~~~l~~~~llt~KP~iivaNk--~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~E~ei~~l----------- 251 (367)
++|--+...+.=..-+...|-++++-- +-.|........+.+.++..+.+..++.++=.++....+.
T Consensus 132 ~LSGGqkQRVaIA~aLa~~P~iLllDEPTs~LD~~~~~~i~~ll~~L~~e~g~Tii~vTHdl~~~~~~aDrvivm~~G~I 211 (276)
T PRK13634 132 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEIMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTV 211 (276)
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEE
T ss_conf 18999999999999997299989976985427999999999999999996199999986799999997999999989999
Q ss_pred ----CCHHH---HHHHHHCCCCCCCHHHHHHH
Q ss_conf ----84267---78877538874228999999
Q gi|254780226|r 252 ----PEEER---ALFMEELDISISGLELLIRS 276 (367)
Q Consensus 252 ----~~ee~---~e~l~~~~l~~tgl~~li~~ 276 (367)
+.+|- -+.|+..++..+-+-++.+.
T Consensus 212 v~~G~p~evf~~p~~l~~~~l~~P~~~~l~~~ 243 (276)
T PRK13634 212 FLQGTPREIFSHPDELEAIGLDLPETVKFKRA 243 (276)
T ss_pred EEECCHHHHHCCHHHHHHCCCCCCHHHHHHHH
T ss_conf 99878999972999999779999969999999
No 439
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=92.38 E-value=0.19 Score=29.58 Aligned_cols=37 Identities=30% Similarity=0.540 Sum_probs=26.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE------EEECCCH
Q ss_conf 867528887888999987404898736668674488337------9976855
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG------EVAVPDP 50 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g------~~~v~d~ 50 (367)
++|||+..+|||||.-.+-++.. + -+|+-| .+.+.+.
T Consensus 31 ~~~IG~SGAGKSTLLR~iNrL~~---G------dk~~~Geilidf~i~~~g~ 73 (253)
T TIGR02315 31 VAVIGPSGAGKSTLLRCINRLVE---G------DKPSSGEILIDFSILLEGT 73 (253)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC---C------CCCCCCEEEEEEEEEECCC
T ss_conf 99973788726799987753026---8------8887650898888887273
No 440
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.38 E-value=0.13 Score=30.60 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=26.4
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
++|+|...+||||+++.+.+.. .|..|.+.+-+
T Consensus 30 v~i~GpSGsGKSTLl~~i~gl~------------~p~sG~i~i~g 62 (214)
T cd03292 30 VFLVGPSGAGKSTLLKLIYKEE------------LPTSGTIRVNG 62 (214)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 9999799953999999996298------------98864999999
No 441
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=92.30 E-value=0.13 Score=30.70 Aligned_cols=31 Identities=42% Similarity=0.668 Sum_probs=24.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 8675288878889999874048987366686744883379976
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
+||+|...+||||+++.+.+.. .|..|.+.+
T Consensus 34 ~giIG~SGaGKSTLlr~i~gL~------------~ptsG~I~~ 64 (343)
T PRK11153 34 YGVIGASGAGKSTLIRCVNLLE------------RPTSGSVIV 64 (343)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEE
T ss_conf 9999999986999999996599------------999639999
No 442
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=92.21 E-value=0.1 Score=31.28 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=30.2
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 86752888788899998740489873666867448833799768555877764
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAE 57 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~ 57 (367)
+=|+|-..+|||||.+.+.+.. .|+.|.+.+----+.+|.+
T Consensus 32 ~fL~GHSGaGKST~lkLi~~~~------------~P~~G~i~~~G~d~~~L~~ 72 (216)
T TIGR00960 32 VFLVGHSGAGKSTLLKLILGIE------------KPTRGKIRFSGQDLTRLRG 72 (216)
T ss_pred EEEECCCCCCHHHHHHHHHHHC------------CCCCCEEEECCCCCCCCCC
T ss_conf 9985688860789999998522------------8998607871542100157
No 443
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=92.20 E-value=0.14 Score=30.44 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=15.5
Q ss_pred EEEEECCCCCHHHHHHHHHCC
Q ss_conf 867528887888999987404
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~ 25 (367)
+||+|...+||||||++++|.
T Consensus 292 ~gl~G~nGsGKsTL~~~l~Gl 312 (510)
T PRK09700 292 LGFAGLVGSGRTELMNCLFGV 312 (510)
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999768886288999998198
No 444
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.20 E-value=0.14 Score=30.45 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=27.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCH
Q ss_conf 48675288878889999874048987366686744883379976855
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDP 50 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~ 50 (367)
-++|+|...+||||+++.+.|.. .|..|.+.+...
T Consensus 28 ~~~ivGpSG~GKSTllr~i~Gl~------------~p~~G~I~~~g~ 62 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE------------EPDSGSILIDGE 62 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECCE
T ss_conf 99999999983999999998599------------999639999999
No 445
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.19 E-value=0.14 Score=30.43 Aligned_cols=32 Identities=38% Similarity=0.579 Sum_probs=25.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 48675288878889999874048987366686744883379976
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
.+||+|-..+|||||++.++|.- .|..|.+.+
T Consensus 34 ~vaiiG~nGsGKSTLl~~l~Gll------------~p~~G~V~~ 65 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLL------------QPTEGKVTV 65 (288)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEE
T ss_conf 99999999947999999997488------------888856999
No 446
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=92.19 E-value=0.15 Score=30.30 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
-+||+|...+||||++++++|.
T Consensus 26 i~~liG~nGsGKSTL~~~l~Gl 47 (491)
T PRK10982 26 IHALMGENGAGKSTLLKCLFGI 47 (491)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999899998199999999569
No 447
>PRK07261 topology modulation protein; Provisional
Probab=92.18 E-value=0.12 Score=30.87 Aligned_cols=79 Identities=29% Similarity=0.371 Sum_probs=48.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC---EEEEECCCHHHHH-HHHHCCCCEEEEEEEEEEECCCCC
Q ss_conf 248675288878889999874048987366686744883---3799768555877-764218650233579998512235
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPN---SGEVAVPDPRMHK-LAEIAESKDLVPTRMSFVDIAGLV 78 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn---~g~~~v~d~~~~~-l~~~~~~~~~~p~~i~~iDvaGLv 78 (367)
|||=|||-|.+|||||=..|. +.-+.|...+|.- .|-...|+..+.. +.++....+ -++|
T Consensus 1 MrI~IiG~sGsGKSTlAr~L~-----~~~~ip~~~LD~l~w~p~w~~~~~~e~~~~~~~~~~~~~------WIiD----- 64 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARFLG-----QHYNCPVLHLDQLHFSSNWQERDDDDMIADISNFLLKQD------WIIE----- 64 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHH-----HHHCCCEEEECCEEECCCCEECCHHHHHHHHHHHHHCCC------EEEE-----
T ss_conf 989998899986899999999-----987979797022788899988889999999999984898------7994-----
Q ss_pred CCCCCCCCCHHHHH--HHHHCCCEEEEE
Q ss_conf 43222466328999--987303747885
Q gi|254780226|r 79 RGASKGEGLGNQFL--AHIREVDAIIHV 104 (367)
Q Consensus 79 ~gA~~G~GlGN~FL--~~ir~aDalihV 104 (367)
|.+ .+.| --+..||.||.+
T Consensus 65 -Gny------~~~~~~~rl~~aD~iI~L 85 (171)
T PRK07261 65 -GNY------SNCLYEERMAEADQIIFL 85 (171)
T ss_pred -CCC------CCHHHHHHHHHCCEEEEE
T ss_conf -785------124777679779999998
No 448
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.17 E-value=0.1 Score=31.32 Aligned_cols=33 Identities=42% Similarity=0.608 Sum_probs=25.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
-+||||...+||||+++.+.+... |..|.+.+.
T Consensus 33 ~~~ivG~SGsGKSTllr~i~gL~~------------p~sG~I~~~ 65 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLER------------PTSGSVLVD 65 (233)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEEC
T ss_conf 999988980589999999967999------------998089999
No 449
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.14 E-value=0.15 Score=30.27 Aligned_cols=93 Identities=12% Similarity=0.127 Sum_probs=49.2
Q ss_pred HHCCHHHHHHHHHHHHHHHCCCHHEECCCH--HHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHC----------
Q ss_conf 313267776210235764101001003430--11101013467877886436984033210024665528----------
Q gi|254780226|r 184 ESLDSDAIPIFKSLNLLTAKPILYICNVSE--HDCKKGNIYTEAVQRLASQQNAEMIIISAAIEAEISQL---------- 251 (367)
Q Consensus 184 ~~~~~de~~~l~~~~llt~KP~iivaNk~e--~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~E~ei~~l---------- 251 (367)
..+|--+...+.=..-+..+|-++++--.= .|........+.++++..+.+..++.++-.++. +...
T Consensus 136 ~~LSGGQrQRvaIA~aLa~~P~lLilDEPTs~LD~~~~~~i~~~l~~l~~~~g~Tvi~iTHdl~~-v~~aDrvivm~~G~ 214 (276)
T PRK13650 136 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKNIRDDYQLTVISITHDLDE-VALSDRVLVMKDGQ 214 (276)
T ss_pred HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECHHH-HHCCCEEEEEECCE
T ss_conf 33899999999999999739999998388665899999999999999998429899999577899-96099999998999
Q ss_pred -----CCHH---HHHHHHHCCCCCCCHHHHHHHH
Q ss_conf -----8426---7788775388742289999999
Q gi|254780226|r 252 -----PEEE---RALFMEELDISISGLELLIRSG 277 (367)
Q Consensus 252 -----~~ee---~~e~l~~~~l~~tgl~~li~~~ 277 (367)
+.+| +.+.++..++..+.+.++.+.-
T Consensus 215 Iv~~Gtp~evf~~p~~l~~~~l~~P~~~~~~~~L 248 (276)
T PRK13650 215 VESTSTPRELFSRGDELLQLGLDIPFTTSLVQML 248 (276)
T ss_pred EEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf 9997689999749899997799998699999999
No 450
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.13 E-value=0.17 Score=29.94 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 486752888788899998740489
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTAS 27 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~ 27 (367)
.++|+|.+.+||||+++.++|.-.
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999988999889999999537676
No 451
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.11 E-value=0.17 Score=29.84 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=25.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 48675288878889999874048987366686744883379976
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
.++|+|.-.+||||+++.++|.- .|..|.+.+
T Consensus 39 ~~~l~GpNGaGKTTLlr~l~Gl~------------~p~~G~I~~ 70 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL------------HVESGQIQI 70 (214)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCEEEEE
T ss_conf 99999999987999999997697------------788419999
No 452
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.10 E-value=0.12 Score=30.85 Aligned_cols=87 Identities=14% Similarity=0.206 Sum_probs=43.9
Q ss_pred HCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHC-----CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHC--------
Q ss_conf 132677762102357641010010034301110-----1013467877886436984033210024665528--------
Q gi|254780226|r 185 SLDSDAIPIFKSLNLLTAKPILYICNVSEHDCK-----KGNIYTEAVQRLASQQNAEMIIISAAIEAEISQL-------- 251 (367)
Q Consensus 185 ~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~-----~~n~~~e~i~~l~~~~~~~~i~isa~~E~ei~~l-------- 251 (367)
.++--+...+.=..-+..+|-+++.- | +.+ ......+.++++..+.+..++.++-.++.. .+.
T Consensus 144 ~LSGGqkQRvaiA~aLa~~P~iLllD--E-PTs~LD~~~~~~i~~~l~~l~~e~g~TvI~itHd~~~a-~~aDrv~vm~~ 219 (283)
T PRK13640 144 NLSGGQKQRVAIAGILAVEPQIIILD--E-STSMLDPAGKEQILKLIRKLMKDNNLTIISITHDIDEA-AGADQVLVLDD 219 (283)
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEEC--C-CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHH-HHCCEEEEEEC
T ss_conf 29999999999999997199999976--8-74548989999999999999970698999997887899-70998999999
Q ss_pred -------CCH---HHHHHHHHCCCCCCCHHHHHH
Q ss_conf -------842---677887753887422899999
Q gi|254780226|r 252 -------PEE---ERALFMEELDISISGLELLIR 275 (367)
Q Consensus 252 -------~~e---e~~e~l~~~~l~~tgl~~li~ 275 (367)
+.+ ++.++++..++..+-+-++.+
T Consensus 220 G~iv~~G~p~evf~~~~~l~~~~l~~P~~~~l~~ 253 (283)
T PRK13640 220 GKLLAQGSPVEIFPKVELLKRIGLDIPFVYKLKL 253 (283)
T ss_pred CEEEEECCHHHHHCCHHHHHHCCCCCCHHHHHHH
T ss_conf 9999977789985799999977999996999999
No 453
>PRK04040 adenylate kinase; Provisional
Probab=92.09 E-value=0.13 Score=30.54 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 982486752888788899998740
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~ 24 (367)
|.+++=++|-|.|||||+.+.+.+
T Consensus 1 ~~k~VvvtGiPGvGKTTv~~~~~~ 24 (189)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALE 24 (189)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 941899975898878999999999
No 454
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=92.09 E-value=0.12 Score=30.92 Aligned_cols=25 Identities=44% Similarity=0.628 Sum_probs=21.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 2486752888788899998740489
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTAS 27 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~ 27 (367)
=++|+.|-+.+||||+++|+=++..
T Consensus 1287 Q~VGlLGRTGsGKSTLLSAlLRL~~ 1311 (1534)
T TIGR01271 1287 QRVGLLGRTGSGKSTLLSALLRLLS 1311 (1534)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 3577530268767899999999607
No 455
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=92.08 E-value=0.14 Score=30.52 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=25.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
++|+|...+||||+++.++|.. .|..|.+.+-
T Consensus 31 ~~llGpSGsGKSTLlr~iaGL~------------~p~sG~I~~~ 62 (352)
T PRK10851 31 VALLGPSGSGKTTLLRIIAGLE------------HQTSGHIRFH 62 (352)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 9999999846999999997699------------9995699999
No 456
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.02 E-value=0.16 Score=29.96 Aligned_cols=33 Identities=42% Similarity=0.629 Sum_probs=27.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 248675288878889999874048987366686744883379976
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
=++||||...+||||+.+.+.+.- +|+.|.+.+
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~------------~~~~G~I~i 388 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLY------------DPTSGEILI 388 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC------------CCCCCEEEE
T ss_conf 878885588885789999998615------------888836989
No 457
>TIGR01184 ntrCD nitrate ABC transporter, ATP-binding proteins C and D; InterPro: IPR005890 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016020 membrane.
Probab=92.02 E-value=0.15 Score=30.22 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 86752888788899998740489
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTAS 27 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~ 27 (367)
|-++|-..+||||++|.+.|.+.
T Consensus 14 isliGHSGCGKSTLLNli~Gl~~ 36 (230)
T TIGR01184 14 ISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99851278617899999850057
No 458
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=91.98 E-value=0.16 Score=30.09 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
.+||+|.-.+||||+++.++|.
T Consensus 32 ~~~lvG~nGaGKSTL~~~l~G~ 53 (501)
T PRK11288 32 VHALMGENGAGKSTLLKILSGN 53 (501)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999899998199999998479
No 459
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.97 E-value=0.29 Score=28.29 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 86752888788899998740489
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTAS 27 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~ 27 (367)
..|+|...+||||+|.|+| .+.
T Consensus 28 ~lI~G~nGsGKSSIldAI~-~AL 49 (908)
T COG0419 28 FLIVGPNGAGKSSILDAIT-FAL 49 (908)
T ss_pred EEEECCCCCCHHHHHHHHH-HHH
T ss_conf 7998999997889999999-998
No 460
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.95 E-value=0.16 Score=30.10 Aligned_cols=32 Identities=38% Similarity=0.591 Sum_probs=25.7
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
++|+|...+||||+++.+.++. .|..|.+.+.
T Consensus 29 ~~ivGpSGsGKSTLL~~i~gL~------------~p~~G~i~i~ 60 (213)
T cd03262 29 VVIIGPSGSGKSTLLRCINLLE------------EPDSGTIIID 60 (213)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 9999999844999999998199------------9986499999
No 461
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.93 E-value=0.15 Score=30.19 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=26.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
-++|+|-..+||||+++.++|.- +|..|.+.+.
T Consensus 29 ~~~ilGpSG~GKSTllr~i~gl~------------~p~~G~I~i~ 61 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLI------------EPTSGEIFID 61 (242)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEEC
T ss_conf 99999999956999999997599------------9981599999
No 462
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=91.92 E-value=0.35 Score=27.70 Aligned_cols=93 Identities=23% Similarity=0.368 Sum_probs=54.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE----------CCCH-----------------------
Q ss_conf 4867528887888999987404898736668674488337997----------6855-----------------------
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVA----------VPDP----------------------- 50 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~----------v~d~----------------------- 50 (367)
++-++|--+||||||-.-++ +.. -.-.|+-+-||.-+|.-. .|..
T Consensus 75 ~vmvvG~vDSGKSTLt~~La-N~~-l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~isP~~ 152 (398)
T COG1341 75 VVMVVGPVDSGKSTLTTYLA-NKL-LARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSISPQG 152 (398)
T ss_pred EEEEECCCCCCHHHHHHHHH-HHH-HHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCEEEEECCCCCC
T ss_conf 89998986767889999999-887-6447418999689997666797467741256777777775865227985147777
Q ss_pred -------HHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHH---HHCCCEEEEEECC
Q ss_conf -------58777642186502335799985122354322246632899998---7303747885012
Q gi|254780226|r 51 -------RMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKGEGLGNQFLAH---IREVDAIIHVLRC 107 (367)
Q Consensus 51 -------~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~GlGN~FL~~---ir~aDalihVVda 107 (367)
|..+|.+..... +.+-++|.+|.|.|.. |=+++.+ .-+.|.++.+=|+
T Consensus 153 ~~~~~i~~v~rL~~~a~~~----~~~ilIdT~GWi~G~~-----g~elk~~li~~ikP~~Ii~l~~~ 210 (398)
T COG1341 153 FPGRYIAGVARLVDLAKKE----ADFILIDTDGWIKGWG-----GLELKRALIDAIKPDLIIALERA 210 (398)
T ss_pred CHHHHHHHHHHHHHHHHCC----CCEEEECCCCCEECCH-----HHHHHHHHHHHCCCCEEEEECCC
T ss_conf 7689999999999986516----8779996998430742-----78999998865097789993144
No 463
>KOG2655 consensus
Probab=91.91 E-value=0.26 Score=28.60 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=18.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHC
Q ss_conf 2486752888788899998740
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~ 24 (367)
+.+=++|-...|||||+|.|-.
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~ 43 (366)
T KOG2655 22 FTLMVVGESGLGKSTFINSLFL 43 (366)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899855887638899988886
No 464
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=91.91 E-value=0.17 Score=29.90 Aligned_cols=32 Identities=38% Similarity=0.543 Sum_probs=25.4
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+||+|.-.+||||+++.++|.- .|..|.+.+-
T Consensus 31 ~gllGpNGAGKTTl~~~l~Gl~------------~p~~G~i~i~ 62 (301)
T TIGR03522 31 VGFLGPNGAGKSTTMKIITGYL------------PPDSGSVQVC 62 (301)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 9999999981999999996795------------6897779992
No 465
>PRK01184 hypothetical protein; Provisional
Probab=91.88 E-value=0.14 Score=30.42 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=18.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHC
Q ss_conf 2486752888788899998740
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~ 24 (367)
|-|||+|.|.+||||+-+-+-.
T Consensus 2 ~iIGlTG~iGSGKstva~i~~e 23 (183)
T PRK01184 2 MIIIVTGMPGSGKGEFSKIARE 23 (183)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3999968998878999999997
No 466
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=91.87 E-value=0.15 Score=30.17 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=9.2
Q ss_pred EEEEECCCCCHHHHHHHHHC
Q ss_conf 86752888788899998740
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~ 24 (367)
+||+|...+|||||+.+++|
T Consensus 282 vgivG~nGsGKSTL~k~L~G 301 (501)
T PRK11288 282 VGFFGLVGAGRSELMKLLYG 301 (501)
T ss_pred EEEECCCCCCHHHHHHHHCC
T ss_conf 99756888648799998438
No 467
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.85 E-value=0.17 Score=29.84 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=45.4
Q ss_pred HHCCHHHHHHHHHHHHHHHCCCHHEECCCH--HHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC---------
Q ss_conf 313267776210235764101001003430--111010134678778864369840332100246655288---------
Q gi|254780226|r 184 ESLDSDAIPIFKSLNLLTAKPILYICNVSE--HDCKKGNIYTEAVQRLASQQNAEMIIISAAIEAEISQLP--------- 252 (367)
Q Consensus 184 ~~~~~de~~~l~~~~llt~KP~iivaNk~e--~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~E~ei~~l~--------- 252 (367)
.+++--+...+.=..-+..+|-++++---= .|........+.+.++..+.+..++.++-.++.... .+
T Consensus 139 ~~LSGGqrQRvaIA~aLa~~P~ililDEPTs~LD~~~~~~i~~ll~~L~~~~~~Tii~iTHdl~~~~~-aDrv~vm~~G~ 217 (277)
T PRK13642 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRSEIMRVIHEIKDKYHLTVLSITHDLDEAAS-SDRILVMRAGE 217 (277)
T ss_pred HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHH-CCEEEEEECCE
T ss_conf 22899999999999999669999999588765898999999999999998169899999458899971-99899998999
Q ss_pred ------CHHH---HHHHHHCCCCCCCHHHHHHH
Q ss_conf ------4267---78877538874228999999
Q gi|254780226|r 253 ------EEER---ALFMEELDISISGLELLIRS 276 (367)
Q Consensus 253 ------~ee~---~e~l~~~~l~~tgl~~li~~ 276 (367)
.+|- .+.+...++..+-+-++.+.
T Consensus 218 Iv~~G~~~evf~~p~~l~~~~l~~P~~~~l~~~ 250 (277)
T PRK13642 218 IIKEAAPSELFATSEDMVEIGLDVPFSSNLMKD 250 (277)
T ss_pred EEEECCHHHHHCCHHHHHHCCCCCCHHHHHHHH
T ss_conf 999768999876967798779999879999999
No 468
>PRK08118 topology modulation protein; Reviewed
Probab=91.82 E-value=0.15 Score=30.18 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=47.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC---EEEEECCCHHHHHH-HHHCCCCEEEEEEEEEEECCC
Q ss_conf 98248675288878889999874048987366686744883---37997685558777-642186502335799985122
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPN---SGEVAVPDPRMHKL-AEIAESKDLVPTRMSFVDIAG 76 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn---~g~~~v~d~~~~~l-~~~~~~~~~~p~~i~~iDvaG 76 (367)
|. ||-|||-|.+|||||=.+|.. .-+.|...+|.- .|-..+|+..+... .++....+ -++|
T Consensus 1 M~-rI~IiG~~GsGKSTlAr~L~~-----~~~ip~~~LD~l~w~~~w~~~~~~e~~~~~~~~~~~~~------WIid--- 65 (167)
T PRK08118 1 MK-KIILIGSGGSGKSTLARQLGE-----KLNIPVHHLDALFWKPNWEGVPKEEQRTVQNELVKEDE------WIID--- 65 (167)
T ss_pred CC-EEEEECCCCCCHHHHHHHHHH-----HHCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHHCCC------EEEE---
T ss_conf 96-799988999879999999999-----88969796443476689946888999999999983898------7994---
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCEEEEE
Q ss_conf 3543222466328999987303747885
Q gi|254780226|r 77 LVRGASKGEGLGNQFLAHIREVDAIIHV 104 (367)
Q Consensus 77 Lv~gA~~G~GlGN~FL~~ir~aDalihV 104 (367)
|.+. .-+=--+..||.||.+
T Consensus 66 ---Gny~-----~~~~~r~~~aD~iI~L 85 (167)
T PRK08118 66 ---GNYG-----GTMDIRLNAADTIIFL 85 (167)
T ss_pred ---CCCH-----HHHHHHHHHCCEEEEE
T ss_conf ---7717-----7998779769999998
No 469
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=91.81 E-value=0.035 Score=34.46 Aligned_cols=31 Identities=45% Similarity=0.707 Sum_probs=24.4
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 8675288878889999874048987366686744883379976
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
.||||--.+||||+||.+||.- .|..|.+..
T Consensus 33 ~~LIGPNGAGKTTlfNlitG~~------------~P~~G~v~~ 63 (250)
T COG0411 33 VGLIGPNGAGKTTLFNLITGFY------------KPSSGTVIF 63 (250)
T ss_pred EEEECCCCCCCEEEEEEECCCC------------CCCCCEEEE
T ss_conf 9998899888245665323640------------588736998
No 470
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.81 E-value=0.24 Score=28.86 Aligned_cols=161 Identities=20% Similarity=0.273 Sum_probs=77.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
..||||-..+||||+-.++.|... |..|.+.+.. +...+ ..
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~------------p~~G~I~~~G------------~~~~~-------------~~-- 75 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEK------------PSSGSILLDG------------KPLAP-------------KK-- 75 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC------------CCCCEEEECC------------CCCCC-------------CC--
T ss_conf 899984898988899999956567------------8886289888------------40576-------------65--
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
....|.. .+++| |.| ++++.+|..-++.+-.|-..- ..+.+.+.+.
T Consensus 76 ---~~~~~~~-------~VQmV--FQD-----p~~SLnP~~tv~~~l~Epl~~--~~~~~~~~~i--------------- 121 (252)
T COG1124 76 ---RAKAFYR-------PVQMV--FQD-----PYSSLNPRRTVGRILSEPLRP--HGLSKSQQRI--------------- 121 (252)
T ss_pred ---CCHHHCC-------CEEEE--ECC-----CCCCCCCCHHHHHHHHHHHCC--CCCCHHHHHH---------------
T ss_conf ---3033304-------50699--518-----722468410198997424303--7753789999---------------
Q ss_pred HHHHHHHHHH--HCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCC--C---HHHHHHHHHHHHHCCCC
Q ss_conf 9999889988--758741034431326777621023576410100100343011101--0---13467877886436984
Q gi|254780226|r 164 SIISSSLRLI--EEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKK--G---NIYTEAVQRLASQQNAE 236 (367)
Q Consensus 164 ~~l~~~~~~L--e~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~--~---n~~~e~i~~l~~~~~~~ 236 (367)
...++.+ .+...-| .+.+++--++-.+.=.+=+..+|-++++- | +.+. . ......+.++...++..
T Consensus 122 ---~~~L~~VgL~~~~l~R-~P~eLSGGQ~QRiaIARAL~~~PklLIlD--E-ptSaLD~siQa~IlnlL~~l~~~~~lt 194 (252)
T COG1124 122 ---AELLDQVGLPPSFLDR-RPHELSGGQRQRIAIARALIPEPKLLILD--E-PTSALDVSVQAQILNLLLELKKERGLT 194 (252)
T ss_pred ---HHHHHHCCCCHHHHHC-CCHHCCHHHHHHHHHHHHHCCCCCEEEEC--C-CHHHHCHHHHHHHHHHHHHHHHHCCCE
T ss_conf ---9999984999899853-94212816899999999863688879953--8-234415889999999999999861945
Q ss_pred CCCCCCHH
Q ss_conf 03321002
Q gi|254780226|r 237 MIIISAAI 244 (367)
Q Consensus 237 ~i~isa~~ 244 (367)
++.+|=.+
T Consensus 195 ~l~IsHdl 202 (252)
T COG1124 195 YLFISHDL 202 (252)
T ss_pred EEEEECCH
T ss_conf 99996729
No 471
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.79 E-value=0.12 Score=30.89 Aligned_cols=20 Identities=55% Similarity=0.878 Sum_probs=18.8
Q ss_pred EEEEECCCCCHHHHHHHHHC
Q ss_conf 86752888788899998740
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~ 24 (367)
|||-|-|.+|||||.+++..
T Consensus 2 iGitG~pGaGKStLi~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEECCCCCCCHHHHHHHHHH
T ss_conf 76258997878999999999
No 472
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=91.77 E-value=0.17 Score=29.91 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=13.1
Q ss_pred EEEEECCCCCHHHHHHHHHCC
Q ss_conf 867528887888999987404
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~ 25 (367)
+||+|...+|||||+++++|.
T Consensus 277 vgl~G~nGsGKsTL~~~l~Gl 297 (491)
T PRK10982 277 LGIAGLVGAKRTDIVETLFGI 297 (491)
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 997789999788999998198
No 473
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=91.73 E-value=0.14 Score=30.33 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=19.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHC
Q ss_conf 2486752888788899998740
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~ 24 (367)
+-|||.|-|.||||||=.++..
T Consensus 35 ~lIgIaG~pGSGKSTlA~~l~~ 56 (230)
T PRK09270 35 TVVGIAGPPGAGKSTLAETLWE 56 (230)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989998899999999999
No 474
>PRK10744 phosphate transporter subunit; Provisional
Probab=91.60 E-value=0.14 Score=30.41 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
.+||+|...+||||+++.++++
T Consensus 38 ~~~liG~nGaGKSTLlk~i~gl 59 (257)
T PRK10744 38 VTAFIGPSGCGKSTLLRTFNKM 59 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999999998199999999876
No 475
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.57 E-value=0.19 Score=29.56 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=27.7
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 982486752888788899998740489873666867448
Q gi|254780226|r 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIE 39 (367)
Q Consensus 1 m~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~ 39 (367)
|.++|=|||+|.+||||+=.++.+ .-||||--+|
T Consensus 1 ~~~~IvLiG~mGaGKSTIGr~LAk-----~L~~~F~D~D 34 (172)
T COG0703 1 RNMNIVLIGFMGAGKSTIGRALAK-----ALNLPFIDTD 34 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH-----HCCCCCCCCH
T ss_conf 996189971799977689999999-----8199802246
No 476
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=91.55 E-value=1.1 Score=24.28 Aligned_cols=43 Identities=23% Similarity=0.408 Sum_probs=28.0
Q ss_pred CCCHHEECCCHHH--HCCCHHHHH--------HHHHHHHHCCCCCCCCCCHHH
Q ss_conf 0100100343011--101013467--------877886436984033210024
Q gi|254780226|r 203 KPILYICNVSEHD--CKKGNIYTE--------AVQRLASQQNAEMIIISAAIE 245 (367)
Q Consensus 203 KP~iivaNk~e~~--~~~~n~~~e--------~i~~l~~~~~~~~i~isa~~E 245 (367)
-|+++||.|+|.= +.+..-|.+ -+.+++.++++.++..|++-+
T Consensus 216 iPIvVV~tKsD~me~LEKe~dy~dEhFDfIqq~LR~fCLqyGAALiYTSvKe~ 268 (490)
T pfam05783 216 IPVVVVCTKCDAMSVLEKEHDYRDEHFDFIQSHIRRFCLQYGAALIYTSVKEE 268 (490)
T ss_pred CCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 87799994641888876512620677899999999999861965788523545
No 477
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=91.48 E-value=0.33 Score=27.92 Aligned_cols=33 Identities=36% Similarity=0.590 Sum_probs=25.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
-+||+|-=.+|||||+.++-|. +.|..|.+.+-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl------------l~p~~G~i~~~ 64 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL------------LKPSSGEIKIF 64 (254)
T ss_pred EEEEECCCCCCHHHHHHHHHCC------------CCCCCCEEEEC
T ss_conf 8999999888889999999678------------76774269983
No 478
>KOG0091 consensus
Probab=91.47 E-value=0.51 Score=26.63 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=56.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
++.=++|-.-||||+++.--|+..-+++. ||.+|+-. +.++-++..+.| +++|+-|.||-
T Consensus 9 frlivigdstvgkssll~~ft~gkfaels-------dptvgvdf-----farlie~~pg~r---iklqlwdtagq----- 68 (213)
T KOG0091 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELS-------DPTVGVDF-----FARLIELRPGYR---IKLQLWDTAGQ----- 68 (213)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCC-------CCCCCHHH-----HHHHHHCCCCCE---EEEEEEECCCH-----
T ss_conf 99999837752488899998337665567-------98533678-----989873478867---89987302056-----
Q ss_pred CCCCCHHHHHH----HHHCCCEEEEEECCCC
Q ss_conf 24663289999----8730374788501234
Q gi|254780226|r 83 KGEGLGNQFLA----HIREVDAIIHVLRCFK 109 (367)
Q Consensus 83 ~G~GlGN~FL~----~ir~aDalihVVdaf~ 109 (367)
.+|-+ --||.=..+.|-|.+.
T Consensus 69 ------erfrsitksyyrnsvgvllvyditn 93 (213)
T KOG0091 69 ------ERFRSITKSYYRNSVGVLLVYDITN 93 (213)
T ss_pred ------HHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf ------8888878998654641699996354
No 479
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=91.45 E-value=0.21 Score=29.23 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
-+||+|...+|||||.++++|.
T Consensus 28 i~~LvG~sGsGKSTL~~~l~Gl 49 (520)
T TIGR03269 28 VLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999996999999999651
No 480
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.44 E-value=0.2 Score=29.39 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=44.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC---CCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCC
Q ss_conf 2486752888788899998740489873666867448---8337997685558777642186502335799985122354
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIE---PNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVR 79 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~---pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~ 79 (367)
|+|=|+|-|.+||||+=..|+. . ||++-|+ ...+....+.+--..... ++|-..|||
T Consensus 1 ~riiilG~pGaGK~T~A~~La~-~------~~i~hlstgd~~r~~~~~~t~lg~~~k~-------------~i~~g~lv~ 60 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAK-K------LGLPHLDTGDILRAAIAERTELGEEIKK-------------YIDKGELVP 60 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHH-H------CCCCEECCCCCCCHHHCCCCHHHHHHHH-------------HHHCCCCCC
T ss_conf 9799989999988999999999-7------6997855220111100323689999999-------------987589504
Q ss_pred CCCCCCCCHHHHHHHHHCCCEE-EEEECCC
Q ss_conf 3222466328999987303747-8850123
Q gi|254780226|r 80 GASKGEGLGNQFLAHIREVDAI-IHVLRCF 108 (367)
Q Consensus 80 gA~~G~GlGN~FL~~ir~aDal-ihVVdaf 108 (367)
+..- ..-+-.-+.++|+- ..+.|.|
T Consensus 61 d~i~----~~~v~~rl~~~d~~~~~I~dg~ 86 (178)
T COG0563 61 DEIV----NGLVKERLDEADCKAGFILDGF 86 (178)
T ss_pred HHHH----HHHHHHHHHHCCCCCEEEEECC
T ss_conf 1769----9799999975065772999899
No 481
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=91.43 E-value=0.17 Score=29.85 Aligned_cols=31 Identities=45% Similarity=0.717 Sum_probs=23.9
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 8675288878889999874048987366686744883379976
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
++|.|...+|||||+.+|= +|| -|.-|.+.|
T Consensus 37 v~L~G~SGaGKSTlLk~lY-------aNY-----lp~~G~i~~ 67 (224)
T TIGR02324 37 VALSGPSGAGKSTLLKSLY-------ANY-----LPDSGRILV 67 (224)
T ss_pred EEEECCCCCCHHHHHHHHH-------HCC-----CCCCCEEEE
T ss_conf 8853688876789999766-------304-----746867777
No 482
>KOG0092 consensus
Probab=91.42 E-value=0.79 Score=25.35 Aligned_cols=83 Identities=28% Similarity=0.327 Sum_probs=51.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
.|+=|+|-.+||||+|--..-. ..-. -.++|.+|.+..-. .-+.+.. -+++++-|.||.=.-.+
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk---~~F~----e~~e~TIGaaF~tk------tv~~~~~---~ikfeIWDTAGQERy~s 69 (200)
T KOG0092 6 FKVVLLGDSGVGKSSLVLRFVK---DQFH----ENIEPTIGAAFLTK------TVTVDDN---TIKFEIWDTAGQERYHS 69 (200)
T ss_pred EEEEEECCCCCCCHHHHHHHHH---CCCC----CCCCCCCCEEEEEE------EEEECCC---EEEEEEEECCCCCCCCC
T ss_conf 7999986787770241122232---7566----32345400078999------9984895---78999987677300335
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 24663289999873037478850123
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
|..= --|+|+|.|.|-|+.
T Consensus 70 ----lapM---YyRgA~AAivvYDit 88 (200)
T KOG0092 70 ----LAPM---YYRGANAAIVVYDIT 88 (200)
T ss_pred ----CCCC---EECCCCEEEEEEECC
T ss_conf ----5610---104776799998556
No 483
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.40 E-value=0.16 Score=30.09 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=17.3
Q ss_pred EEEEEECCCCCHHHHHHHHH
Q ss_conf 48675288878889999874
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALT 23 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT 23 (367)
.++|||...+|||||+|++-
T Consensus 23 ~~aIiG~sGsGKSTLl~~~L 42 (261)
T cd03271 23 LTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998799986999999998
No 484
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=91.40 E-value=0.2 Score=29.41 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEEECCCCCHHHHHHHHHCC
Q ss_conf 4867528887888999987404
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRT 25 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~ 25 (367)
.+||+|...+||||++++++|.
T Consensus 32 i~~liG~nGaGKSTL~~~l~G~ 53 (501)
T PRK10762 32 VMALVGENGAGKSTLMKVLTGI 53 (501)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999899998299999999579
No 485
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=91.39 E-value=0.18 Score=29.70 Aligned_cols=33 Identities=27% Similarity=0.568 Sum_probs=26.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
++|+|-..+||||+++.++|.. .|..|.+.+-.
T Consensus 48 ~~llGpsGsGKSTllr~i~Gl~------------~p~~G~I~i~G 80 (377)
T PRK11607 48 FALLGASGCGKSTLLRMLAGFE------------QPSAGQIMLDG 80 (377)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 9999999848999999997699------------99865999999
No 486
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=91.38 E-value=0.16 Score=29.97 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=10.0
Q ss_pred EEEEECCCCCHHHHHHHHHC
Q ss_conf 86752888788899998740
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~ 24 (367)
+||+|...+|||||+++++|
T Consensus 281 ~gi~G~nGsGKsTL~~~l~G 300 (501)
T PRK10762 281 LGVSGLMGAGRTELMKVLYG 300 (501)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99667888768899999818
No 487
>KOG0066 consensus
Probab=91.38 E-value=0.21 Score=29.21 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=25.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
+-||||--.-||+|++.-+. +..| .|-||+-+..|.
T Consensus 292 RYGLVGPNG~GKTTLLkHIa--------~Ral-aIPpnIDvLlCE 327 (807)
T KOG0066 292 RYGLVGPNGMGKTTLLKHIA--------ARAL-AIPPNIDVLLCE 327 (807)
T ss_pred EECCCCCCCCCHHHHHHHHH--------HHHC-CCCCCCCEEEEE
T ss_conf 30006789876377999987--------5211-689987368651
No 488
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=91.34 E-value=0.21 Score=29.28 Aligned_cols=32 Identities=25% Similarity=0.538 Sum_probs=25.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
.||+|.-.+||||+++.++|.. .|..|.+.+-
T Consensus 34 ~gllGpNGAGKTTli~~l~Gl~------------~p~sG~v~i~ 65 (304)
T PRK13537 34 FGLLGPNGAGKTTTLKMLLGLT------------HPDAGTISLC 65 (304)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 9999998972999999997795------------6897689999
No 489
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.34 E-value=0.2 Score=29.38 Aligned_cols=34 Identities=35% Similarity=0.424 Sum_probs=26.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
.+||+|--.+||||+++.++|.- .|..|.+.+-.
T Consensus 33 ~~aiiG~NGsGKSTLl~~l~Gl~------------~p~~G~I~i~G 66 (273)
T PRK13647 33 KTAILGPNGAGKSTLLLHLNGIY------------TAQRGRVKVMG 66 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99999999975999999996698------------88861999999
No 490
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=91.22 E-value=0.21 Score=29.20 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=25.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
+||+|...+||||+++++.|... |..|.+.+-+
T Consensus 27 ~~l~GpsGaGKTTLl~~iaGl~~------------p~~G~I~~~g 59 (352)
T PRK11144 27 TAIFGRSGAGKTSLINLISGLTR------------PQKGRIVLNG 59 (352)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC------------CCCEEEEECC
T ss_conf 99999999629999999976899------------9965999999
No 491
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=91.21 E-value=0.23 Score=29.02 Aligned_cols=33 Identities=36% Similarity=0.580 Sum_probs=25.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 486752888788899998740489873666867448833799768
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
.+.|+|-..+|||||+|.+.|-. .|..|.+.+-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~------------~P~~G~i~i~ 59 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE------------TPASGEILIN 59 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC------------CCCCCEEEEC
T ss_conf 79997788865788999987424------------7787458985
No 492
>PRK03839 putative kinase; Provisional
Probab=91.03 E-value=0.2 Score=29.40 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHC
Q ss_conf 2486752888788899998740
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~ 24 (367)
|.|+|.|-|.+||||+=+.|..
T Consensus 1 M~I~ITGTPGtGKTTva~~La~ 22 (180)
T PRK03839 1 MIIAITGTPGVGKTTISKLLAE 22 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 9899978999998999999999
No 493
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.02 E-value=0.49 Score=26.75 Aligned_cols=39 Identities=5% Similarity=0.064 Sum_probs=14.9
Q ss_pred ECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCC
Q ss_conf 127867677851100121034836999736888774499
Q gi|254780226|r 298 TIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGG 336 (367)
Q Consensus 298 ~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~ 336 (367)
+++-++...|+.-.++.==.-|.=+.+--+-+.-..+|+
T Consensus 325 Vlsat~~~~dl~~i~~~f~~~~~~~lI~TKlDEt~~~G~ 363 (412)
T PRK05703 325 VLSATTKYRDLKDIVKHFSRLPLDGLILTKLDETSSLGS 363 (412)
T ss_pred EECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCH
T ss_conf 975989989999999984679998799971128998629
No 494
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=90.99 E-value=0.18 Score=29.76 Aligned_cols=178 Identities=18% Similarity=0.243 Sum_probs=78.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
-+||||...+||||+.+++.+.-.. +.+ + .|.+.+. + .|+-++
T Consensus 44 ilgivGeSGsGKSTl~~~i~gll~~---~~~-~-----sG~I~~~------------G----------~~i~~~------ 86 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLLAA---NGR-I-----GGSATFN------------G----------REILNL------ 86 (330)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC---CCC-E-----EEEEEEC------------C----------EECCCC------
T ss_conf 9999868987799999999768888---883-3-----5899999------------9----------986658------
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
..+-+..+|.-+ |.+| |.| +..+.||..-+...-.|..... +.+.+.... ....
T Consensus 87 ----~~~~~~~~r~~~--I~~v--fQd-----p~~sLnP~~~i~~~l~e~l~~~-----~~~~~~~~~--------~~~~ 140 (330)
T PRK09473 87 ----PEKELNKLRAEQ--ISMI--FQD-----PMTSLNPYMRVGEQLMEVLMLH-----KGMSKAEAF--------EESV 140 (330)
T ss_pred ----CHHHHHHHHCCC--EEEE--EEC-----CCHHCCCCCCHHHHHHHHHHHH-----CCCCHHHHH--------HHHH
T ss_conf ----999999863066--7999--607-----5011384104566555789885-----389989999--------9999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCC--HHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999889988758741034431326777621023576410100100343--01110101346787788643698403321
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVS--EHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~--e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
.++.. ...-+....+..++.+++--+...+.=.+-+..+|-++++--- -.|........+.+.++..+.+..++++|
T Consensus 141 ~lL~~-v~l~~~~~~l~~yP~eLSGGq~QRV~IArAL~~~P~lLI~DEPTsaLDv~~q~~Il~ll~~l~~e~g~til~IT 219 (330)
T PRK09473 141 RMLDA-VKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMIT 219 (330)
T ss_pred HHHHH-HHCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 88887-60721788873481533988999999999997099999973875547999999999999999997499479982
Q ss_pred CHHH
Q ss_conf 0024
Q gi|254780226|r 242 AAIE 245 (367)
Q Consensus 242 a~~E 245 (367)
=.+.
T Consensus 220 HDl~ 223 (330)
T PRK09473 220 HDLG 223 (330)
T ss_pred CCHH
T ss_conf 8899
No 495
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=90.91 E-value=0.23 Score=28.94 Aligned_cols=32 Identities=41% Similarity=0.634 Sum_probs=26.0
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 86752888788899998740489873666867448833799768
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVP 48 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~ 48 (367)
++|+|...+||||+.+.+.++. +|..|.+.+.
T Consensus 57 ~~ivG~SGsGKSTLlr~i~gL~------------~Pt~G~I~i~ 88 (400)
T PRK10070 57 FVIMGLSGSGKSTMVRLLNRLI------------EPTRGQVLID 88 (400)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEEC
T ss_conf 9999999846999999997599------------9898189999
No 496
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=90.85 E-value=0.23 Score=28.96 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=26.3
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 867528887888999987404898736668674488337997685
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
++|+|-..+||||+++.+.|.. .|..|.+.+-.
T Consensus 46 ~~llGpSGsGKSTLlr~iaGl~------------~p~sG~I~~~G 78 (378)
T PRK09452 46 LTLLGPSGCGKTTVLRLIAGFE------------TPDSGRIMLDG 78 (378)
T ss_pred EEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 9999899976999999997699------------99846999999
No 497
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.85 E-value=0.24 Score=28.84 Aligned_cols=34 Identities=35% Similarity=0.495 Sum_probs=26.6
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
.+||+|-..+|||||++.+.|.- .|..|.+.+.+
T Consensus 35 ~~aiiG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g 68 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLH------------VPTTGIVSVDD 68 (280)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCEEEEECC
T ss_conf 99999599986999999996699------------98860899999
No 498
>KOG1707 consensus
Probab=90.85 E-value=1.3 Score=23.83 Aligned_cols=88 Identities=24% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHH--CCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCC
Q ss_conf 8248675288878889999874--04898736668674488337997685558777642186502335799985122354
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALT--RTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVR 79 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT--~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~ 79 (367)
.++|-|+|-..||||++-.+|+ .-.++----.|-.||-+++-.-+|| +.++|..
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vp--------------------t~ivD~s---- 64 (625)
T KOG1707 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVP--------------------TSIVDTS---- 64 (625)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--------------------EEEEECC----
T ss_conf 2599997788866899999987633545345557761158756767672--------------------1887436----
Q ss_pred CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCC
Q ss_conf 3222466328999987303747885012345421134
Q gi|254780226|r 80 GASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHV 116 (367)
Q Consensus 80 gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~ 116 (367)
-+++.+ ++.-..||+||+++.|-.+...+.+.++
T Consensus 65 s~~~~~---~~l~~EirkA~vi~lvyavd~~~T~D~i 98 (625)
T KOG1707 65 SDSDDR---LCLRKEIRKADVICLVYAVDDESTVDRI 98 (625)
T ss_pred CCCCHH---HHHHHHHHHCCEEEEEEECCCHHHHHHH
T ss_conf 664256---8899998645889999853876876544
No 499
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=90.78 E-value=0.25 Score=28.67 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 8675288878889999874048987366
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAAN 32 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ 32 (367)
+||+|.-.+||||+++.++|...+..+.
T Consensus 36 ~gllGpNGAGKSTli~~l~Gl~~p~sG~ 63 (306)
T PRK13536 36 FGLLGPNGAGKSTIARMILGMTSPDAGK 63 (306)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCE
T ss_conf 9999998980999999996795789877
No 500
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=90.78 E-value=0.19 Score=29.49 Aligned_cols=20 Identities=35% Similarity=0.518 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHC
Q ss_conf 86752888788899998740
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTR 24 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~ 24 (367)
+||+|...+||||++++++|
T Consensus 34 ~~lvG~nGsGKSTL~~~l~G 53 (513)
T PRK13549 34 VSLCGENGAGKSTLMKVLSG 53 (513)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99989999729999999956
Done!