HHsearch alignment for GI: 254780226 and conserved domain: pfam00071
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=98.57 E-value=1.8e-06 Score=63.37 Aligned_cols=147 Identities=22% Similarity=0.215 Sum_probs=80.9
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 1 Ki~vvG~~~vGKTsli~r~~~~-~-f~~~~-----~~t~~~~~~~~------~~~~~~---~~~~~~i~Dt~G~e~~--- 61 (162)
T pfam00071 1 KLVLVGDGGVGKSSLLIRFTQN-K-FPEEY-----IPTIGVDFYTK------TIEVDG---KTVKLQIWDTAGQERF--- 61 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHHC-C-CCCCC-----CCCCEEEEEEE------EEEECC---EEEEEEEEECCCCHHH---
T ss_conf 9899997997799999999619-9-99874-----77413556789------999999---9999999978987204---
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
T Consensus 62 -~~~---~~~~~~~ad~~iivfd~~~~~S--------------------------------~~~i~-------------- 91 (162)
T pfam00071 62 -RAL---RPLYYRGAQGFLLVYDITSRDS--------------------------------FENVK-------------- 91 (162)
T ss_pred -HHH---HHHHHCCCCCCEEECCCCCHHH--------------------------------HHHHH--------------
T ss_conf -678---8998625765504234898899--------------------------------99999--------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 99998899887587410344313267776210235764101001003430111010134678778864369840332100
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAA 243 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~ 243 (367)
T Consensus 92 ----~~~~~i~~-----------------~~-~----~~~piilvgnK~Dl~~~-~~i~~~e~~~~a~~~~~~y~e~Sak 144 (162)
T pfam00071 92 ----KWLEEILR-----------------HA-D----DNVPIVLVGNKCDLEDQ-RVVSTEEGEALAKELGLPFMETSAK 144 (162)
T ss_pred ----HHHHHHHH-----------------HC-C----CCCEEEEEEECCCHHHC-CCCCHHHHHHHHHHHCCEEEEECCC
T ss_conf ----99999998-----------------57-9----88628899752474651-8899999999999809979997378
Q ss_pred HHH
Q ss_conf 246
Q gi|254780226|r 244 IEA 246 (367)
Q Consensus 244 ~E~ 246 (367)
T Consensus 145 ~g~ 147 (162)
T pfam00071 145 TNE 147 (162)
T ss_pred CCC
T ss_conf 882