HHsearch alignment for GI: 254780226 and conserved domain: pfam08477
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=97.60 E-value=0.00063 Score=46.24 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=54.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 1 KivvvG~~~vGKTSLi~r~~~~~f--~~~~~~~~~~~~~~~~~~~----------~~~~---~~~l~i~Dt~g~~~~~-- 63 (118)
T pfam08477 1 KVVVIGDKGSGKSSLLSQLVGGEF--PPEIPEEIQGDTLAVDTLE----------VDGD---TELLHIWDFGGREELK-- 63 (118)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCCEEEEEEEE----------ECCC---EEEEEEEECCCCHHHH--
T ss_conf 999999899789999999983988--8766678777768889999----------9992---8999999899967776--
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 64 -----~~~~~~~~~~d~~ilvydit~ 84 (118)
T pfam08477 64 -----FEHIIFMKTADAILLVYDLTD 84 (118)
T ss_pred -----HHHHHHCCCCCEEEEEEECCC
T ss_conf -----666542258746789997998