BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780226|ref|YP_003064639.1| translation-associated GTPase
[Candidatus Liberibacter asiaticus str. psy62]
(367 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780226|ref|YP_003064639.1| translation-associated GTPase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 367
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAE 60
MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAE
Sbjct: 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAE 60
Query: 61 SKDLVPTRMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRI 120
SKDLVPTRMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRI
Sbjct: 61 SKDLVPTRMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRI 120
Query: 121 DPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQSIISSSLRLIEEGKPVR 180
DPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQSIISSSLRLIEEGKPVR
Sbjct: 121 DPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQSIISSSLRLIEEGKPVR 180
Query: 181 SLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIII 240
SLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIII
Sbjct: 181 SLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIII 240
Query: 241 SAAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDLITYFTVGPKETRAWTIP 300
SAAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDLITYFTVGPKETRAWTIP
Sbjct: 241 SAAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDLITYFTVGPKETRAWTIP 300
Query: 301 RGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDI 360
RGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDI
Sbjct: 301 RGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDI 360
Query: 361 LHFRFNV 367
LHFRFNV
Sbjct: 361 LHFRFNV 367
>gi|254780648|ref|YP_003065061.1| GTPase ObgE [Candidatus Liberibacter asiaticus str. psy62]
Length = 335
Score = 63.9 bits (154), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 19/108 (17%)
Query: 6 GIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLV 65
GIIGLPN GKST ++TR A + A+YPF T+ PN G V K+ +
Sbjct: 163 GIIGLPNAGKSTFLASVTR-AKPKIADYPFTTLYPNLGIVK------------EGYKEFI 209
Query: 66 PTRMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKDENI 113
DI G+++ A +G G+G++FL H ++H++ +EN+
Sbjct: 210 -----LADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSAL-EENV 251
>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 470
Score = 40.0 bits (92), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCT 37
M + I+G PNVGKSTLFN L + A N+P T
Sbjct: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGIT 37
Score = 28.5 bits (62), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 3 FKCGIIGLPNVGKSTLFNAL 22
+ ++G PNVGKSTL N L
Sbjct: 204 LRIAVVGRPNVGKSTLINRL 223
>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
str. psy62]
Length = 440
Score = 33.5 bits (75), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCT 37
G+K I+G N GKS+LFNAL + A + P T
Sbjct: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 26.2 bits (56), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAES 61
G G+IG GK+TLF LT S P+SG + V + L+ + +S
Sbjct: 343 GGIVGVIGPNGAGKTTLFRMLTGDES------------PDSGTIHVGETVC--LSYVDQS 388
Query: 62 KD-LVPTRMSFVDIAG 76
+D L + + DI+G
Sbjct: 389 RDSLEAEKTVWEDISG 404
>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 185 SLDSDAIPIFKSLNLLTAKPILYI 208
S D+D+I I K L+ + +P +YI
Sbjct: 9 SYDADSIQILKGLDAVKKRPSMYI 32
>gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 426
Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 179 VRSLLESLDSDAIPIFKSLNLLTAKPI 205
V L +++D+D IPI +SL LTA +
Sbjct: 170 VVGLPKTIDNDIIPIHQSLGALTAAQV 196
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 23.9 bits (50), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 6 GIIGLPNVGKSTLFNAL 22
+IGL GKSTLF A+
Sbjct: 42 ALIGLNGAGKSTLFQAI 58
>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 853
Score = 23.9 bits (50), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 11 PNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKL--AEIAESKDLVPTR 68
P +G+ + S + N P +P G+ A+ + ++ +I ES L R
Sbjct: 179 PVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPES--LKGKR 236
Query: 69 MSFVDIAGLVRGAS-KGE 85
+ +D+ L+ GA +GE
Sbjct: 237 LMALDMGALIAGAKFRGE 254
Score = 22.7 bits (47), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 350 GKEYIVKDGDILH 362
G EY+++DGD +H
Sbjct: 721 GAEYLIEDGDSVH 733
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,925
Number of Sequences: 1233
Number of extensions: 8977
Number of successful extensions: 50
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 19
length of query: 367
length of database: 328,796
effective HSP length: 75
effective length of query: 292
effective length of database: 236,321
effective search space: 69005732
effective search space used: 69005732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)