HHsearch alignment for GI: 254780227 and conserved domain: cd00363

>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=100.00  E-value=0  Score=654.57  Aligned_cols=327  Identities=24%  Similarity=0.281  Sum_probs=287.0

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT  109 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~  109 (426)
T Consensus         1 krIaIltsGG~~pGmNa~ir~vv~~a~~--~g~~v~Gi~~G~~GL~~~~~---~~L~~~~v~~i~~~GGt~LgssR~~~~   75 (338)
T cd00363           1 KKIGVLTSGGDAPGMNAAIRGVVRSAIA--EGLEVYGIYEGYAGLVEGDI---KELDWESVSDIINRGGTIIGSARCKEF   75 (338)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHCCCCE---EECCHHHHHHHHHCCCEECCCCCCCCC
T ss_conf             9599986888866888999999999997--79999998257777707981---629999998798569813167678766


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG  189 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG  189 (426)
T Consensus        76 ~~------------~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDl~~td~t~G  143 (338)
T cd00363          76 RT------------EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIG  143 (338)
T ss_pred             CC------------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             78------------677899999999829998999789269999999999888528995189841034789978854888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             56599999999999998775166616999976987428999987401433231011111110001457652328786559
Q gi|254780227|r  190 ALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFN  269 (426)
Q Consensus       190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~  269 (426)
T Consensus       144 f~TA~~~~~~ai~~i~~ta~S-~~rv~iVEvMGR~aG~lAl~aala~ga--------------------d~iliPE~~~~  202 (338)
T cd00363         144 FDTALKTIVEAIDRIRDTASS-HQRTFVVEVMGRHCGDIALEAGLATGA--------------------DIIFIPEEPAA  202 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCHHHHHHHHHCCC--------------------CEEEECCCCCC
T ss_conf             799999999999999987406-787799996898833899998874299--------------------88995486777


Q ss_pred             ---HHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             ---8999999999850-289538995042111111012320112222234445443556648999999998718743188
Q gi|254780227|r  270 ---LEVEIERLSKVME-KKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIV  345 (426)
Q Consensus       270 ---~~~~~~~i~~~~~-~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~~~~  345 (426)
T Consensus       203 ~~~~~~~~~~i~~~~~~gk~~~iVvVaEG~~~~~~----------------------~~~~~~~l~~~i~~~~~~~-~r~  259 (338)
T cd00363         203 DEWEEEMVDVIKKRRERGKRHGIVIVAEGAIDFIP----------------------KPITEKLLAKLVEERLGFD-TRA  259 (338)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC----------------------CCCHHHHHHHHHHHHHCCC-EEE
T ss_conf             40399999999999974897279999799855568----------------------7435899999999985970-545


Q ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC---CEEEEEEEHHHHCCCCCCCC--CHHHHHHH
Q ss_conf             418861235589867999999999999999977998669999859---86996430898526882077--75899999
Q gi|254780227|r  346 QKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERE---NNILRIIKFEDIRGGRVFDT--NTPWFSDI  418 (426)
Q Consensus       346 ~~lGy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~---~~~~~~i~~~~i~~~k~vd~--~~~~~~~~  418 (426)
T Consensus       260 ~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~G~tg~mv~i~~~~~~~i~~vPl~-~~~~~~k~v~~dl~~~~f~~~  336 (338)
T cd00363         260 TVLGHVQRGGTPTAFDRILASRLGAEAVELLLEGTGGTPVGIQNLNENQVVRHPLT-EAVNMTKRVGVDLEGRPFKKF  336 (338)
T ss_pred             CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCHH-HHHHHCCCCCHHHCCCCHHHH
T ss_conf             20489885899987899999999999999998499993699995889979961299-997326889934456965675