Query         gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 426
No_of_seqs    135 out of 1583
Neff          7.0 
Searched_HMMs 13730
Date          Mon May 23 20:38:54 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780227.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2f48a1 c.89.1.1 (A:4-553) Pyr 100.0       0       0  629.6  35.8  360   27-421    67-514 (550)
  2 d4pfka_ c.89.1.1 (A:) ATP-depe 100.0       0       0  613.4  36.3  310   30-416     2-312 (319)
  3 d1pfka_ c.89.1.1 (A:) ATP-depe 100.0       0       0  609.9  35.6  314   30-420     3-317 (320)
  4 d2bona1 e.52.1.2 (A:5-299) Lip  95.5    0.04 2.9E-06   30.2   8.0   90  123-224    38-129 (295)
  5 d2qv7a1 e.52.1.2 (A:1-312) Dia  95.1   0.027 1.9E-06   31.4   6.2   88  124-223    44-131 (312)
  6 d1z0sa1 e.52.1.1 (A:1-249) Ino  94.5   0.029 2.1E-06   31.2   5.1   32  138-175    39-70  (249)
  7 d1u0ta_ e.52.1.1 (A:) Inorgani  94.4    0.02 1.4E-06   32.2   3.9   56  136-206    69-126 (302)
  8 d1rrma_ e.22.1.2 (A:) Lactalde  93.1    0.22 1.6E-05   25.5   7.4   58  124-181    73-145 (385)
  9 d1vlja_ e.22.1.2 (A:) NADH-dep  92.6    0.23 1.7E-05   25.3   6.9   57  124-180    78-147 (398)
 10 d1o2da_ e.22.1.2 (A:) Alcohol   91.9    0.25 1.8E-05   25.1   6.5   58  124-181    72-142 (359)
 11 d1jq5a_ e.22.1.2 (A:) Glycerol  91.4    0.39 2.8E-05   23.9   7.5   53  124-181    71-123 (366)
 12 d1a9xa3 c.30.1.1 (A:1-127) Car  89.9    0.52 3.8E-05   23.0   9.5  116   25-178     3-124 (127)
 13 d2a84a1 c.26.1.4 (A:3-288) Pan  88.4    0.48 3.5E-05   23.2   5.5   20  213-232    30-50  (286)
 14 d1oj7a_ e.22.1.2 (A:) Hypothet  87.6    0.75 5.4E-05   22.0   6.3   56  124-179    74-145 (390)
 15 d1ihoa_ c.26.1.4 (A:) Pantothe  85.5    0.75 5.4E-05   22.0   5.1   29  212-240    21-50  (282)
 16 d1kq3a_ e.22.1.2 (A:) Glycerol  70.8     2.7  0.0002   18.4   5.1   51  125-181    71-121 (364)
 17 d1v8fa_ c.26.1.4 (A:) Pantothe  68.7       3 0.00022   18.1   6.5   25  173-198   104-128 (276)
 18 d1ujna_ e.22.1.1 (A:) Dehydroq  67.8     3.1 0.00023   18.0   6.0   52  123-177    66-120 (347)
 19 d1a9xa4 c.30.1.1 (A:556-676) C  67.1     3.2 0.00023   17.9   8.6  109   27-179     2-116 (121)
 20 d1vcoa1 c.23.16.1 (A:298-547)   64.1     3.7 0.00027   17.6   5.1   58  137-210    57-116 (250)
 21 d1s1ma1 c.23.16.1 (A:287-544)   58.9     4.5 0.00033   17.0   4.7   59  137-211    56-116 (258)
 22 d1zq1a2 c.88.1.1 (A:76-438) Gl  54.9     5.2 0.00038   16.6   9.1   63  123-187    75-141 (363)
 23 d1dbqa_ c.93.1.1 (A:) Purine r  52.8     5.6 0.00041   16.3  20.2   92   30-179     1-92  (282)
 24 d1gsoa2 c.30.1.1 (A:-2-103) Gl  52.4     5.7 0.00042   16.3   5.1   96   30-175     3-98  (105)
 25 d4pgaa_ c.88.1.1 (A:) Glutamin  51.6     5.9 0.00043   16.2   7.4   71  124-196    65-139 (330)
 26 d1pvda3 c.36.1.9 (A:361-556) P  49.9     5.3 0.00039   16.5   2.7   31  140-171    76-107 (196)
 27 d1qopa_ c.1.2.4 (A:) Trp synth  49.1     6.5 0.00047   16.0   6.5  144  126-296     3-159 (267)
 28 d1sg6a_ e.22.1.1 (A:) Dehydroq  48.7     6.5 0.00048   15.9   6.7   52  123-177    82-138 (389)
 29 d1wsaa_ c.88.1.1 (A:) Asparagi  48.1     6.7 0.00049   15.9   6.3   70  123-194    62-135 (328)
 30 d1i7qb_ c.23.16.1 (B:) Anthran  46.0     6.7 0.00049   15.9   2.7   55  127-194    36-90  (192)
 31 d1agxa_ c.88.1.1 (A:) Glutamin  45.5     7.3 0.00053   15.6   6.6   60  124-185    64-127 (331)
 32 d1xmpa_ c.23.8.1 (A:) N5-CAIR   44.7     7.5 0.00055   15.5   5.2   80  123-229    41-127 (155)
 33 d1u11a_ c.23.8.1 (A:) N5-CAIR   44.6     7.5 0.00055   15.5   3.2   48  124-178    43-91  (159)
 34 d2ciwa1 a.39.3.1 (A:0-119) Clo  42.7     3.7 0.00027   17.5   1.0   10   37-46     26-35  (120)
 35 d1o7ja_ c.88.1.1 (A:) Asparagi  41.7     8.4 0.00061   15.2   7.3   70  123-194    64-137 (325)
 36 d1byka_ c.93.1.1 (A:) Trehalos  39.1     9.2 0.00067   15.0   9.7  121   28-218     1-121 (255)
 37 d1q6za3 c.36.1.9 (A:342-524) B  37.8     4.6 0.00033   16.9   0.8   32  140-171    79-110 (183)
 38 d1o4va_ c.23.8.1 (A:) N5-CAIR   36.5      10 0.00073   14.7   3.2   80  124-230    41-121 (169)
 39 d1qcza_ c.23.8.1 (A:) N5-CAIR   36.1      10 0.00074   14.7   4.3   49  123-178    41-90  (163)
 40 d1ozha2 c.36.1.5 (A:7-187) Cat  35.4      10 0.00076   14.6   3.9   40  127-172     8-47  (181)
 41 d1jyea_ c.93.1.1 (A:) Lac-repr  35.3      10 0.00076   14.6  11.2  126   32-224     3-128 (271)
 42 d1vdra_ c.71.1.1 (A:) Dihydrof  35.0      11 0.00077   14.6   2.6   52  125-183    79-130 (157)
 43 d1q6za2 c.36.1.5 (A:2-181) Ben  34.5      11 0.00079   14.5   2.9   27  127-153     4-30  (180)
 44 d1u6ka1 c.127.1.1 (A:2-283) F4  31.9      12 0.00087   14.3   5.8   49  123-173    44-96  (282)
 45 d1yzya1 c.146.1.1 (A:1-412) Hy  30.7      12 0.00091   14.1   4.5   27  126-152    60-89  (412)
 46 d1tjya_ c.93.1.1 (A:) AI-2 rec  30.5      13 0.00092   14.1  17.2   97   28-180     2-98  (316)
 47 d2d6fa2 c.88.1.1 (A:84-435) Gl  30.0      13 0.00093   14.0   7.3   61  123-185    66-129 (352)
 48 d1ig3a2 c.100.1.1 (A:10-178) T  29.3      13 0.00096   14.0   7.9  127   19-173    18-167 (169)
 49 d1wl8a1 c.23.16.1 (A:1-188) GM  28.0      14   0.001   13.8   2.5   50  132-194    37-86  (188)
 50 d1k92a1 c.26.2.1 (A:1-188) Arg  27.8      12 0.00086   14.3   1.5   43   21-71      2-44  (188)
 51 d1pvda2 c.36.1.5 (A:2-181) Pyr  27.5      14   0.001   13.8   3.6   81  127-236     6-86  (180)
 52 d2ez9a2 c.36.1.5 (A:9-182) Pyr  27.0      14   0.001   13.7   5.9   41  128-172     7-47  (174)
 53 d1b5ta_ c.1.23.1 (A:) Methylen  26.8      15  0.0011   13.7   3.7   76   50-149    23-101 (275)
 54 d2pjua1 c.92.3.1 (A:11-196) Pr  26.2      15  0.0011   13.6   9.7  110  125-290    38-147 (186)
 55 d2ji7a2 c.36.1.5 (A:7-194) Oxa  26.1      15  0.0011   13.6   5.4   40  127-172     7-46  (188)
 56 d1q7ra_ c.23.16.1 (A:) Hypothe  24.6      16  0.0012   13.4   4.4   34   25-67      2-35  (202)
 57 d1kp0a1 c.55.2.1 (A:1-156) Cre  24.4      16  0.0012   13.4   2.8   24  125-148    26-49  (156)
 58 d1iv0a_ c.55.3.8 (A:) Hypothet  24.2      16  0.0012   13.4   3.4   28  155-182    41-68  (98)
 59 d1nnsa_ c.88.1.1 (A:) Asparagi  23.9      16  0.0012   13.3   7.4   68  124-193    63-132 (326)
 60 d1efpb_ c.26.2.3 (B:) Small, b  23.8      17  0.0012   13.3   6.2   53  128-181    69-128 (246)
 61 d1v93a_ c.1.23.1 (A:) Methylen  23.7      17  0.0012   13.3   3.7   82   43-149    27-110 (292)
 62 d2djia2 c.36.1.5 (A:3-186) Pyr  22.9      17  0.0013   13.2   2.5   26  128-153     8-33  (184)
 63 d1f0ka_ c.87.1.2 (A:) Peptidog  22.4      18  0.0013   13.2  11.1  115   30-173     1-119 (351)
 64 d1iowa1 c.30.1.2 (A:1-96) D-Al  21.6      18  0.0013   13.1   4.7   39   27-67      1-40  (96)
 65 d1chma1 c.55.2.1 (A:2-156) Cre  21.3      18  0.0013   13.0   3.0   23  125-147    25-47  (155)
 66 d2c1xa1 c.87.1.10 (A:7-456) UD  20.6      19  0.0014   12.9   3.6   24   40-65     10-33  (450)
 67 d1lbaa_ d.118.1.1 (A:) Bacteri  20.1      20  0.0014   12.9   4.1   35  152-192    97-131 (146)

No 1  
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}
Probab=100.00  E-value=0  Score=629.57  Aligned_cols=360  Identities=21%  Similarity=0.252  Sum_probs=302.1

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             76337999836877514899999999999985699789998383660107991304626988887464078740033678
Q gi|254780227|r   27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRV  106 (426)
Q Consensus        27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~  106 (426)
                      ....|||||||||||||||++|+|++++++.++++++||||++||+||++++++   +++++.++.|.++||+.|++||.
T Consensus        67 ~~~~rIgIl~sGG~aPG~N~vI~gvv~~~~~~~~~~~v~G~~~G~~GL~~~~~~---~L~~~~v~~~~~~GG~~l~~s~r  143 (550)
T d2f48a1          67 SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKI---ELTESLINSYRNTGGFDIVSSGR  143 (550)
T ss_dssp             CSCCEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEE---EECHHHHHHHTTCCSSTTTCCBC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCEE---ECCHHHHHHHHHCCCCEECCCCC
T ss_conf             898779998967872889999999999999858998999988503886489879---89999983487279907217999


Q ss_pred             CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--C
Q ss_conf             88653011101234567456999999998639988999488257899999999998518996288522223477222--1
Q gi|254780227|r  107 KLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIP--I  184 (426)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~--t  184 (426)
                      ..+            ++++++++++++|++++||+||+||||||+++|+.|+|++++++++|+||||||||||||++  |
T Consensus       144 ~~~------------~~~e~~~~i~~~l~~~~Id~LviIGGd~S~~~a~~Lae~~~~~~~~i~vigvPKTIDNDl~~~~~  211 (550)
T d2f48a1         144 TKI------------ETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHI  211 (550)
T ss_dssp             CCC------------CSHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSC
T ss_pred             CCC------------CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf             997------------67788899999998648887999898379999999999999718996289702443678777655


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             14633565999999999999987751666169999769874289999874014332310111111100014576523287
Q gi|254780227|r  185 HQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLP  264 (426)
Q Consensus       185 d~tiGfdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliP  264 (426)
                      |+|||||||+++++++|++++.||.|++++|||||||||+|||||++||||++|+                    +|+||
T Consensus       212 d~s~GfdTA~~~~~~~i~~l~~da~S~~~~~~~VevMGR~aG~lAl~~alat~a~--------------------~ilip  271 (550)
T d2f48a1         212 EISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALKTHPN--------------------ICIVS  271 (550)
T ss_dssp             CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCTTSCHHHHHHHHHHCCS--------------------EECCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCC--------------------EEEEC
T ss_conf             6654277899999999999998876435634899980687718899999861886--------------------59833


Q ss_pred             CCCCC----H----HHHHHHHHH-HHHCCCCEEEEEECCCCCCCCHHH--------------------------------
Q ss_conf             86559----8----999999999-850289538995042111111012--------------------------------
Q gi|254780227|r  265 EMSFN----L----EVEIERLSK-VMEKKGSVAIFVSEGACRDVIMDN--------------------------------  303 (426)
Q Consensus       265 E~~~~----~----~~~~~~i~~-~~~~~~~~vIVvsEG~~~~~~~~~--------------------------------  303 (426)
                      |.+++    +    +.++..+.+ ...+++|++|+||||+.....+-.                                
T Consensus       272 E~~~~~~~~L~~i~~~i~~~I~kR~~~gk~~gvIvV~EGli~~ipe~~~Li~el~~~l~~~~~~~~~~~~~~~~~~~~~~  351 (550)
T d2f48a1         272 EEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAK  351 (550)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGGGTSHHHHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             64464010178999999999999997289838999547321036678899999987654023210122201234455542


Q ss_pred             -----------------HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC----------CEEEECCCCCCCCCC
Q ss_conf             -----------------32011222223444544355664899999999871874----------318841886123558
Q gi|254780227|r  304 -----------------RLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAE----------RSIVQKSGYFARSAP  356 (426)
Q Consensus       304 -----------------~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~----------~~~~~~lGy~qRgg~  356 (426)
                                       .+......++|+|||++++.++++++|++++++++..+          ...++.+||+|||+.
T Consensus       352 ls~~~~~l~~~lp~~i~~qll~~~~~rD~~G~~~ls~I~~e~lLa~~V~~~L~~~~~~~~~~~~f~~~~h~~GYe~R~a~  431 (550)
T d2f48a1         352 LSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAF  431 (550)
T ss_dssp             SCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHHHHHHHHHHHHHHHHHTTTCCCSCCCEEEEEESHHHHTSC
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEECCC
T ss_conf             01344444302617788887530136488888633454577999999999998766403344312454426653231779


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-----EEEEEEEHHHHCC-------------CCCCCCCHHHHHHH
Q ss_conf             98679999999999999999779986699998598-----6996430898526-------------88207775899999
Q gi|254780227|r  357 SGSEDLSLIKKMVVLAVDSAISGISGVTGEDEREN-----NILRIIKFEDIRG-------------GRVFDTNTPWFSDI  418 (426)
Q Consensus       357 Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~-----~~~~~i~~~~i~~-------------~k~vd~~~~~~~~~  418 (426)
                      ||+||+.||++||+.||+++++|+||+|+++++.+     +....+|+..+.+             +..||+++..|+.+
T Consensus       432 PS~fD~~~a~~lG~~Av~~~~~G~tG~M~~I~~l~~~~~~w~~~~iPl~~~m~~e~r~g~~~~~i~k~~v~l~~~~f~~~  511 (550)
T d2f48a1         432 PSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVPLTMLMNMEERYGEKKPVIKKALVDLEGRPFKEF  511 (550)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGGCEEEEEEGGGGEEEEEETTEEEEEECCCCCCTTSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEECCEECCCCHHHHHH
T ss_conf             99899999999999999999769988799884798897214887856899950787469867533055268886899999


Q ss_pred             HHH
Q ss_conf             984
Q gi|254780227|r  419 LRH  421 (426)
Q Consensus       419 l~~  421 (426)
                      ...
T Consensus       512 ~~~  514 (550)
T d2f48a1         512 VKN  514 (550)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


No 2  
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00  E-value=0  Score=613.44  Aligned_cols=310  Identities=23%  Similarity=0.305  Sum_probs=278.2

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT  109 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~  109 (426)
                      ||||||||||||||||++|+++++++..  .+++|||+++||+||++++++   +++++++..|.++|||+|||||++++
T Consensus         2 krIaIl~sGG~~pgiNa~i~~~v~~~~~--~~~~v~g~~~G~~Gl~~~~~~---~l~~~~~~~~~~~gGt~lgs~r~~~~   76 (319)
T d4pfka_           2 KRIGVLTSGGDSPGMNAAIRSVVRKAIY--HGVEVYGVYHGYAGLIAGNIK---KLEVGDVGDIIHRGGTILYTARCPEF   76 (319)
T ss_dssp             CEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEESSHHHHHHTTCEE---EECGGGGTTCTTCCSCTTCCCCCTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHCCCCCC---CCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             8899987688768999999999999987--799999983166875679951---59989998798648630035888865


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG  189 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG  189 (426)
                      .            .++.+++++++|++++||+|++|||||||++|++|+++      +++||||||||||||++||+|||
T Consensus        77 ~------------~~~~~~~~~~~l~~~~I~~li~iGG~~s~~~a~~L~~~------~~~vvgIPkTIDNDl~~td~t~G  138 (319)
T d4pfka_          77 K------------TEEGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIG  138 (319)
T ss_dssp             S------------SHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCSSCCCTTCSSCBT
T ss_pred             C------------CCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHC------CCCEEEEEEECCCCCCCCCCCCC
T ss_conf             5------------41004469999998336638995383689999998733------67555221021688678566310


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             56599999999999998775166616999976987428999987401433231011111110001457652328786559
Q gi|254780227|r  190 ALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFN  269 (426)
Q Consensus       190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~  269 (426)
                      |+||++++++++++++.||.|+ +||||||+|||+|||||++++||++|                    |++||||.||+
T Consensus       139 f~TA~~~~~~~i~~l~~~a~s~-~rv~ivEvMGR~aG~lA~~~~la~~a--------------------~~iliPE~~~~  197 (319)
T d4pfka_         139 FDTALNTVIDAIDKIRDTATSH-ERTYVIEVMGRHAGDIALWSGLAGGA--------------------ETILIPEADYD  197 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCSSCCHHHHHHHHHTTC--------------------SEEECTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCHHHHHHHCCCCC--------------------CEEEECCCCCC
T ss_conf             8999999999999987430567-64699996688886899985455787--------------------68985477998


Q ss_pred             HHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             89999999998502-89538995042111111012320112222234445443556648999999998718743188418
Q gi|254780227|r  270 LEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKS  348 (426)
Q Consensus       270 ~~~~~~~i~~~~~~-~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~~~~~~l  348 (426)
                      ++++++.+++++++ +++++||+|||+..                             +..+.+.+++..+.+ +|+..|
T Consensus       198 ~~~~~~~i~~~~~~~k~~~ivvvsEG~~~-----------------------------~~~~~~~i~~~~g~~-~r~~~l  247 (319)
T d4pfka_         198 MNDVIARLKRGHERGKKHSIIIVAEGVGS-----------------------------GVDFGRQIQEATGFE-TRVTVL  247 (319)
T ss_dssp             HHHHHHHHHHHHHTTCSCEEEEEETTTCC-----------------------------HHHHHHHHHHHHCCC-EEEEEC
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCCH-----------------------------HHHHHHHHHHHCCCE-EEEEEC
T ss_conf             78889999988862687138998335320-----------------------------134665566534962-688524


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCCCHHHHH
Q ss_conf             86123558986799999999999999997799866999985986996430898526882077758999
Q gi|254780227|r  349 GYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFS  416 (426)
Q Consensus       349 Gy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k~vd~~~~~~~  416 (426)
                      ||+|||+.||++||.+|++||..||+++++|+||+|++++++++.++|++ +.+...|++|++  ||.
T Consensus       248 G~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g~sg~mv~i~~~~~~~vpl~-~v~~~~k~v~~~--l~~  312 (319)
T d4pfka_         248 GHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGRCVGIQNNQLVDHDIA-EALANKHTIDQR--MYA  312 (319)
T ss_dssp             GGGGGCSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEEEHH-HHTTSCCCCCHH--HHH
T ss_pred             CCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECHH-HHHHCCCCCCHH--HHH
T ss_conf             70003799888999999999999999997699985999999999987399-997167779999--999


No 3  
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=609.89  Aligned_cols=314  Identities=25%  Similarity=0.313  Sum_probs=276.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT  109 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~  109 (426)
                      ||||||||||||||||++|+++++++..  ++++||||++||+||++++++   +++++.+++|.++|||+|||||++++
T Consensus         3 krIgIltsGG~~pg~Na~i~~~v~~~~~--~~~~v~g~~~G~~Gl~~~~~~---~l~~~~v~~~~~~gGs~lgt~R~~~~   77 (320)
T d1pfka_           3 KKIGVLTSGGDAPGMNAAIRGVVRSALT--EGLEVMGIYDGYLGLYEDRMV---QLDRYSVSDMINRGGTFLGSARFPEF   77 (320)
T ss_dssp             CEEEEEECSSCCTTHHHHHHHHHHHHHH--TTCEEEEESTHHHHHHTTCEE---EECSGGGTTCTTCCSCTTCCCCCGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHCCCCEE---ECCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             6499986688866889999999999987--899899994668887279857---29999998898469985231478877


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             53011101234567456999999998639988999488257899999999998518996288522223477222114633
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLG  189 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiG  189 (426)
                      .            +++..++++++|++++||+|++||||||+++|++|+++      .++|||||||||||+++||+|||
T Consensus        78 ~------------~~~~~~~~~~~l~~~~I~~li~iGG~~s~~~a~~l~~~------~~~vigiPkTIDNDl~~td~s~G  139 (320)
T d1pfka_          78 R------------DENIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEM------GFPCIGLPGTIDNDIKGTDYTIG  139 (320)
T ss_dssp             G------------SHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCTTCCCTTCSCCBT
T ss_pred             C------------CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHC------CCCEEEEEEEECCCCCCCCCCCC
T ss_conf             6------------65555038889987699889996796589999998751------66522230143178888678883


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             56599999999999998775166616999976987428999987401433231011111110001457652328786559
Q gi|254780227|r  190 ALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFN  269 (426)
Q Consensus       190 fdTA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~  269 (426)
                      |+||++++++++++++.+|. +|+||||||+|||+|||||++++||++|                    |++||||.||+
T Consensus       140 f~TA~~~~~~~i~~l~~~a~-s~~rv~ivEvMGR~~G~la~~~ala~~a--------------------~~iliPE~~~~  198 (320)
T d1pfka_         140 FFTALSTVVEAIDRLRDTSS-SHQRISVVEVMGRYCGDLTLAAAIAGGC--------------------EFVVVPEVEFS  198 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHTCEEEEEECCTTCCHHHHHHHHHTTC--------------------SEEECTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEECCCHHHHHHHHHHCCCC--------------------CEEECCCCCCC
T ss_conf             48899999999999864014-7873899996256126899985410477--------------------56842788999


Q ss_pred             HHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             8999999999850-289538995042111111012320112222234445443556648999999998718743188418
Q gi|254780227|r  270 LEVEIERLSKVME-KKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKS  348 (426)
Q Consensus       270 ~~~~~~~i~~~~~-~~~~~vIVvsEG~~~~~~~~~~~~~~~~~~~d~~g~~~l~~~~i~~~La~~i~~~~~~~~~~~~~l  348 (426)
                      ++.+++.+++++. .+++++||+|||...                             ...+++.+++.++.+ .|+..|
T Consensus       199 ~~~~~~~i~~~~~~~~~~~iivvsEg~~~-----------------------------~~~~~~~i~~~~g~~-~r~~~l  248 (320)
T d1pfka_         199 REDLVNEIKAGIAKGKKHAIVAITEHMCD-----------------------------VDELAHFIEKETGRE-TRATVL  248 (320)
T ss_dssp             HHHHHHHHHHHHHTTCSCEEEEEESSSSC-----------------------------HHHHHHHHHHHHSSC-EEEEEC
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCCCC-----------------------------CHHHHHHHHHHHCCC-EEECCC
T ss_conf             89999999998852799611896145444-----------------------------304899999871960-365243


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             861235589867999999999999999977998669999859869964308985268820777589999998
Q gi|254780227|r  349 GYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILR  420 (426)
Q Consensus       349 Gy~qRgg~Ps~~Dr~~a~~lG~~Av~~~~~G~sgvmv~i~~~~~~~~~i~~~~i~~~k~vd~~~~~~~~~l~  420 (426)
                      ||+|||++|+++||.+|++||+.||+++++|++|+||+++++++.++|++ +.+.+.|.  |..++|.++..
T Consensus       249 G~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~G~~g~mvg~~~~~~~~~pl~-~~v~~~k~--~~~~~~~~~a~  317 (320)
T d1pfka_         249 GHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGRCVGIQNEQLVHHDII-DAIENMKR--PFKGDWLDCAK  317 (320)
T ss_dssp             GGGGGCSCCCHHHHHHHHHHHHHHHHHHHHTCCSEEEEEETTEEEEEEHH-HHHHHCCC--CCCHHHHHHHH
T ss_pred             CHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECHH-HHHHCCCC--CCCHHHHHHHH
T ss_conf             16550799988999999999999999997799986999999998981699-99831787--99599999999


No 4  
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}
Probab=95.50  E-value=0.04  Score=30.23  Aligned_cols=90  Identities=18%  Similarity=0.183  Sum_probs=57.3

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-HHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             745699999999863998899948825789999-99999985189962-8852222347722211463356599999999
Q gi|254780227|r  123 DENPLEVSAHHLMQSGVTILHTIGGDDTNTTAC-DLLRYLKEKNYNIT-VVGLPKTIDNDIIPIHQSLGALTAAQVSACF  200 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~-~L~e~~~~~~~~i~-vigiPKTIDNDi~~td~tiGfdTA~~~~a~~  200 (426)
                      ...+..++++.+.+.+.|.+++.|||||...+. .|.+   ..+...+ +--+|.==-||+.   .++|..+....+   
T Consensus        38 ~~g~a~~~~~~~~~~~~d~Ivv~GGDGTv~ev~~gl~~---~~~~~~p~lgilP~GTgN~~A---r~lg~~~~~~~a---  108 (295)
T d2bona1          38 EKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQ---CEGDDIPALGILPLGTANDFA---TSVGIPEALDKA---  108 (295)
T ss_dssp             STTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH---CCSSCCCEEEEEECSSSCHHH---HHTTCCSSHHHH---
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH---CCCCCCCEEEEEECCCCCCHH---HHCCCCCCHHHH---
T ss_conf             83459999999986699789997798279899987875---067889659999778665308---774998424666---


Q ss_pred             HHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             999998775166616999976987
Q gi|254780227|r  201 FDNISNERSATPRSLIIHEVMGRN  224 (426)
Q Consensus       201 i~~l~~~A~s~~~~~~iVEvMGR~  224 (426)
                      ++.+..   ...+++-+.++-++.
T Consensus       109 ~~~i~~---g~~~~id~~~v~~~~  129 (295)
T d2bona1         109 LKLAIA---GDAIAIDMAQVNKQT  129 (295)
T ss_dssp             HHHHHH---SEEEEEEEEEETTSC
T ss_pred             HHHHCC---CCEEEEEEEEEECCE
T ss_conf             642035---625985400341000


No 5  
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}
Probab=95.15  E-value=0.027  Score=31.36  Aligned_cols=88  Identities=20%  Similarity=0.192  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             45699999999863998899948825789999999999851899628852222347722211463356599999999999
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDN  203 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~  203 (426)
                      ..+....++.+...+.|.+++.|||||...+..-   +..++..+++.-+|.==-||+.   .++|.......+   ++.
T Consensus        44 ~~~~~~~~~~~~~~~~d~ivv~GGDGTv~~v~~~---l~~~~~~~~l~iiP~GTgN~~a---r~l~~~~~~~~a---l~~  114 (312)
T d2qv7a1          44 IGDATLEAERAMHENYDVLIAAGGDGTLNEVVNG---IAEKPNRPKLGVIPMGTVNDFG---RALHIPNDIMGA---LDV  114 (312)
T ss_dssp             TTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHH---HTTCSSCCEEEEEECSSCCHHH---HHTTCCSSHHHH---HHH
T ss_pred             CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH---HHHHCCCCCEEEEECCCCCCCH---HHCCCCCHHHHH---HHH
T ss_conf             2279999998877699889998678479999999---9753556636875368887504---422466149999---975


Q ss_pred             HHHHHHHCCCCEEEEEECCC
Q ss_conf             99877516661699997698
Q gi|254780227|r  204 ISNERSATPRSLIIHEVMGR  223 (426)
Q Consensus       204 l~~~A~s~~~~~~iVEvMGR  223 (426)
                      +. +  ...+++-+.++=+|
T Consensus       115 ~~-~--~~~~~id~~~v~~~  131 (312)
T d2qv7a1         115 II-E--GHSTKVDIGKMNNR  131 (312)
T ss_dssp             HH-H--TCEEEEEEEEETTE
T ss_pred             HH-C--CCCEEECCCCCCCC
T ss_conf             51-3--98189664346764


No 6  
>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=94.55  E-value=0.029  Score=31.15  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=24.5

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             99889994882578999999999985189962885222
Q gi|254780227|r  138 GVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPK  175 (426)
Q Consensus       138 ~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPK  175 (426)
                      +.|.++++|||||+-.|.+..      ...+||+||.-
T Consensus        39 ~~D~vi~iGGDGT~L~a~~~~------~~~~PilGIn~   70 (249)
T d1z0sa1          39 NFDFIVSVGGDGTILRILQKL------KRCPPIFGINT   70 (249)
T ss_dssp             GSSEEEEEECHHHHHHHHTTC------SSCCCEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHH------CCCCCEEEECC
T ss_conf             799999987819999999983------67994899775


No 7  
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=94.37  E-value=0.02  Score=32.22  Aligned_cols=56  Identities=27%  Similarity=0.474  Sum_probs=37.4

Q ss_pred             HCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH--HHHHHHHHHH
Q ss_conf             6399889994882578999999999985189962885222234772221146335659999--9999999998
Q gi|254780227|r  136 QSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQV--SACFFDNISN  206 (426)
Q Consensus       136 ~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~--~a~~i~~l~~  206 (426)
                      ..++|.+|++|||||+-.|.....     ..++||+||--          =++||-|..+.  ..++++++..
T Consensus        69 ~~~~Dlvi~lGGDGT~L~a~~~~~-----~~~~PilGin~----------G~lGFL~~~~~~~~~~~l~~~~~  126 (302)
T d1u0ta_          69 ADGCELVLVLGGDGTFLRAAELAR-----NASIPVLGVNL----------GRIGFLAEAEAEAIDAVLEHVVA  126 (302)
T ss_dssp             ---CCCEEEEECHHHHHHHHHHHH-----HHTCCEEEEEC----------SSCCSSCSEEGGGHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHH-----CCCCEEEEECC----------CCCCEECCCCHHHHHHHHHHHHH
T ss_conf             346558999758739999999740-----03982898378----------86305414545678999999874


No 8  
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}
Probab=93.14  E-value=0.22  Score=25.46  Aligned_cols=58  Identities=16%  Similarity=0.214  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHC---------------CCCCEEEEECCCCCCCC
Q ss_conf             45699999999863998899948825789999999999851---------------89962885222234772
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEK---------------NYNITVVGLPKTIDNDI  181 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~---------------~~~i~vigiPKTIDNDi  181 (426)
                      .++.+++++.+++.+.|.+|.|||.-++..|..++-.....               ...+|+|.||-|--++-
T Consensus        73 ~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~lP~i~IPTtagTgs  145 (385)
T d1rrma_          73 ITVVKEGLGVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAA  145 (385)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCT
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             8999988654303588889866988422699999999638753026665043222478774674366544643


No 9  
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}
Probab=92.55  E-value=0.23  Score=25.34  Aligned_cols=57  Identities=7%  Similarity=0.035  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHC-------------CCCCEEEEECCCCCCC
Q ss_conf             45699999999863998899948825789999999999851-------------8996288522223477
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEK-------------NYNITVVGLPKTIDND  180 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~-------------~~~i~vigiPKTIDND  180 (426)
                      .++.+++++.+++.+.|.+|.+||.-++..|..++......             ...+|+|.||-|--+.
T Consensus        78 ~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~iPTt~gtg  147 (398)
T d1vlja_          78 LSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATG  147 (398)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSC
T ss_pred             HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCCCC
T ss_conf             8999987641145667668844886311278888988641455677643664436778733541465443


No 10 
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}
Probab=91.92  E-value=0.25  Score=25.06  Aligned_cols=58  Identities=19%  Similarity=0.212  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHC-------------CCCCEEEEECCCCCCCC
Q ss_conf             45699999999863998899948825789999999999851-------------89962885222234772
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEK-------------NYNITVVGLPKTIDNDI  181 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~-------------~~~i~vigiPKTIDNDi  181 (426)
                      .+..+++++.+++.+.|.+|.+||.-+++.|..++-.....             ...+|+|.||-|--++-
T Consensus        72 ~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtgs  142 (359)
T d1o2da_          72 FDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGS  142 (359)
T ss_dssp             HHHHHHHHHHHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCG
T ss_pred             HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCH
T ss_conf             89998764200135775688516642001899999998489971331167534457787588426455422


No 11 
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=91.38  E-value=0.39  Score=23.87  Aligned_cols=53  Identities=23%  Similarity=0.255  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             4569999999986399889994882578999999999985189962885222234772
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI  181 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi  181 (426)
                      .+..+++.+.+++.+.|.+|.+||--++..|..++..     .++|+|.||=|--.+-
T Consensus        71 ~~~v~~~~~~~~~~~~D~IiavGGGs~iD~aK~iA~~-----~~~p~i~IPTT~gtgs  123 (366)
T d1jq5a_          71 RNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADE-----LDAYIVIVPTAASTDA  123 (366)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH-----HTCEEEEEESSCCSSC
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHEEEEC-----CCCEEEEHHHHHHHHH
T ss_conf             9999999998620388689981688644220001204-----6653540243443432


No 12 
>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=89.89  E-value=0.52  Score=23.02  Aligned_cols=116  Identities=19%  Similarity=0.159  Sum_probs=71.6

Q ss_pred             CCCCEEEEEEEECCCC----CHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCC
Q ss_conf             4876337999836877----514899999999999985699789998383660107991304626988887464078740
Q gi|254780227|r   25 KDMVAHKVAFLTAGGI----APCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSP  100 (426)
Q Consensus        25 ~~~~~krI~IltsGG~----aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~  100 (426)
                      ++...|||.||=||.-    +--..-+...++++++..  |++++-+        +.++..+.- +++..+.+       
T Consensus         3 ~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~--g~~~ili--------N~NP~TVst-d~d~aD~l-------   64 (127)
T d1a9xa3           3 KRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREE--GYRVINV--------NSNPATIMT-DPEMADAT-------   64 (127)
T ss_dssp             CCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH--TCEEEEE--------CSCTTCGGG-CGGGSSEE-------
T ss_pred             CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHC--CCEEEEE--------CCCHHHHHC-CHHHCCEE-------
T ss_conf             87788779998888470266301578999999999976--9847984--------586675315-86550214-------


Q ss_pred             CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEE-EECCHHHHHHHHHHHHHHHHCCCCCEEEEEC-CCCC
Q ss_conf             0336788865301110123456745699999999863998899-9488257899999999998518996288522-2234
Q gi|254780227|r  101 IGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILH-TIGGDDTNTTACDLLRYLKEKNYNITVVGLP-KTID  178 (426)
Q Consensus       101 LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li-~IGGdgS~~~a~~L~e~~~~~~~~i~vigiP-KTID  178 (426)
                                       |.   .+-..+.+.+.+++-+.|+++ ..||--.+..+..|.+...-++++++++|.+ ++||
T Consensus        65 -----------------Yf---ePlt~e~v~~Ii~~E~pd~il~~~GGQtalnla~~L~~~giL~~~~v~iLGt~~~sId  124 (127)
T d1a9xa3          65 -----------------YI---EPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAID  124 (127)
T ss_dssp             -----------------EC---SCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHH
T ss_pred             -----------------EE---ECCCHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHCCCHHHCCCEEECCCHHHHH
T ss_conf             -----------------65---3488999999999857687698760030867899998858377669858789999999


No 13 
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=88.44  E-value=0.48  Score=23.25  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=11.4

Q ss_pred             CCEEEEEECCC-CCCHHHHHH
Q ss_conf             61699997698-742899998
Q gi|254780227|r  213 RSLIIHEVMGR-NCGWLTAYS  232 (426)
Q Consensus       213 ~~~~iVEvMGR-~aG~LAl~~  232 (426)
                      +++.+|=+||- |.||++|.-
T Consensus        30 ~~i~~VPTMGaLH~GHlsLi~   50 (286)
T d2a84a1          30 RRVMLVPTMGALHEGHLALVR   50 (286)
T ss_dssp             CCEEEEEECSSCCHHHHHHHH
T ss_pred             CEEEEEECCCCHHHHHHHHHH
T ss_conf             908999388634189999999


No 14 
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]}
Probab=87.59  E-value=0.75  Score=22.02  Aligned_cols=56  Identities=14%  Similarity=0.058  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH----------------HCCCCCEEEEECCCCCC
Q ss_conf             456999999998639988999488257899999999998----------------51899628852222347
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLK----------------EKNYNITVVGLPKTIDN  179 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~----------------~~~~~i~vigiPKTIDN  179 (426)
                      .+..+.+++.+++.+.|.+|.+||--++..|..++-...                .....+|+|.||-|--.
T Consensus        74 ~~~v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagt  145 (390)
T d1oj7a_          74 YETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPAT  145 (390)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSS
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999999999976337877985478854408999999751874300344312466433467873335665443


No 15 
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=85.54  E-value=0.75  Score=22.02  Aligned_cols=29  Identities=10%  Similarity=0.118  Sum_probs=13.8

Q ss_pred             CCCEEEEEECCC-CCCHHHHHHHHHCCCCC
Q ss_conf             661699997698-74289999874014332
Q gi|254780227|r  212 PRSLIIHEVMGR-NCGWLTAYSAHCYLNMI  240 (426)
Q Consensus       212 ~~~~~iVEvMGR-~aG~LAl~~ala~ga~~  240 (426)
                      .+++.+|=|||- |.||++|.-.-...++.
T Consensus        21 g~~ig~VPTMGaLH~GHlsLi~~A~~~~~~   50 (282)
T d1ihoa_          21 GKRVALVPTMGNLHDGHMKLVDEAKARADV   50 (282)
T ss_dssp             TCCEEEEEECSCCCHHHHHHHHHHHHHCSE
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             990999828750548999999999874896


No 16 
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=70.79  E-value=2.7  Score=18.42  Aligned_cols=51  Identities=24%  Similarity=0.279  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             569999999986399889994882578999999999985189962885222234772
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI  181 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi  181 (426)
                      ..++++ ..+.+.+.|.+|.+||--.+..|..++-     ..++|+|.||=|--++-
T Consensus        71 ~~i~~~-~~~~~~~~D~IIavGGGs~~D~aK~ia~-----~~~~P~I~IPTTa~tgs  121 (364)
T d1kq3a_          71 EEIERL-SGLVEEETDVVVGIGGGKTLDTAKAVAY-----KLKKPVVIVPTIASTDA  121 (364)
T ss_dssp             HHHHHH-HTTCCTTCCEEEEEESHHHHHHHHHHHH-----HTTCCEEEEESSCCCSC
T ss_pred             HHHHHH-HHHHHCCCCEEEEECCCCCCEEECCCCC-----CCCCCCEEECCCCCCCC
T ss_conf             799999-9975205768998136754101012233-----34210124225433332


No 17 
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=68.67  E-value=3  Score=18.13  Aligned_cols=25  Identities=4%  Similarity=-0.061  Sum_probs=11.1

Q ss_pred             ECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             22223477222114633565999999
Q gi|254780227|r  173 LPKTIDNDIIPIHQSLGALTAAQVSA  198 (426)
Q Consensus       173 iPKTIDNDi~~td~tiGfdTA~~~~a  198 (426)
                      .|+.+++-+.|. +-+|+...+-+++
T Consensus       104 ~~~~l~~~leG~-~RPgHF~GV~tVV  128 (276)
T d1v8fa_         104 VEGPLTALWEGA-VRPGHFQGVATVV  128 (276)
T ss_dssp             ECSHHHHSTHHH-HSTTHHHHHHHHH
T ss_pred             ECCCCCCCCCCC-CCCCHHHHHHHHH
T ss_conf             635335556689-8971377899999


No 18 
>d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]}
Probab=67.79  E-value=3.1  Score=18.02  Aligned_cols=52  Identities=13%  Similarity=0.150  Sum_probs=38.8

Q ss_pred             CHHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             74569999999986399---88999488257899999999998518996288522223
Q gi|254780227|r  123 DENPLEVSAHHLMQSGV---TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI  177 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~I---d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI  177 (426)
                      +-+.++++.+.+.+.++   +.++.|||--..+.|--.|..   ..-+++.|.||-|.
T Consensus        66 sl~~~~~i~~~l~~~~~~r~~~iiaiGGG~v~D~agf~A~~---y~rgi~~i~vPTtl  120 (347)
T d1ujna_          66 SLEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAAT---YLRGVAYLAFPTTT  120 (347)
T ss_dssp             SHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHH---BTTCCEEEEEECSH
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHH---HCCCCCEEECCCHH
T ss_conf             99999999999997320356533686033233578887654---31785034036514


No 19 
>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=67.06  E-value=3.2  Score=17.93  Aligned_cols=109  Identities=18%  Similarity=0.112  Sum_probs=60.2

Q ss_pred             CCEEEEEEEECCCCCHH----HHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf             76337999836877514----89999999999998569978999838366010799130462698888746407874003
Q gi|254780227|r   27 MVAHKVAFLTAGGIAPC----LSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIG  102 (426)
Q Consensus        27 ~~~krI~IltsGG~aPG----~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~Lg  102 (426)
                      ..+|||.||=||.--=|    ..-+....+++++..  |.+++-+        +.++..+.- +++..+.+         
T Consensus         2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~--g~~~Ili--------N~NPeTVst-d~d~aD~l---------   61 (121)
T d1a9xa4           2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALRED--GYETIMV--------NCNPETVST-DYDTSDRL---------   61 (121)
T ss_dssp             SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT--TCEEEEE--------CCCTTSSTT-STTSSSEE---------
T ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHC--CCEEEEE--------ECCHHHHHC-CHHHCCCE---------
T ss_conf             988779998778471166300208899999999966--9847997--------167665306-86444864---------


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCC
Q ss_conf             367888653011101234567456999999998639988999-48825789999999999851899628852-222347
Q gi|254780227|r  103 NSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHT-IGGDDTNTTACDLLRYLKEKNYNITVVGL-PKTIDN  179 (426)
Q Consensus       103 tsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~-IGGdgS~~~a~~L~e~~~~~~~~i~vigi-PKTIDN  179 (426)
                                     |..   +-..+.+.+.+++-+.+++++ .||    +++..|+..+.+.  +++++|. |.+||.
T Consensus        62 ---------------Yfe---plt~e~v~~Ii~~E~p~~ii~~~GG----Qtalnla~~L~~~--gv~iLGt~~~~Id~  116 (121)
T d1a9xa4          62 ---------------YFE---PVTLEDVLEIVRIEKPKGVIVQYGG----QTPLKLARALEAA--GVPVIGTSPDAIDR  116 (121)
T ss_dssp             ---------------ECC---CCSHHHHHHHHHHHCCSEEECSSST----HHHHTTHHHHHHT--TCCBCSSCHHHHHH
T ss_pred             ---------------EEC---CCCHHHHHHHHHHHCCCEEEEEHHH----HHHHHHHHHHHHC--CCCEECCCHHHHHH
T ss_conf             ---------------881---5889999999997699879953321----3177899999996--99488979999989


No 20 
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=64.08  E-value=3.7  Score=17.56  Aligned_cols=58  Identities=17%  Similarity=0.137  Sum_probs=37.2

Q ss_pred             CCCCEEEEECCHHH--HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             39988999488257--899999999998518996288522223477222114633565999999999999987751
Q gi|254780227|r  137 SGVTILHTIGGDDT--NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA  210 (426)
Q Consensus       137 ~~Id~Li~IGGdgS--~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s  210 (426)
                      .++|++++-||.|.  ..+...-.+|++++  +||             .--.|+||+.|+=..+.-+-.+ .+|.|
T Consensus        57 ~~~dGIlvPGGFG~rG~eGki~ai~yARen--~iP-------------fLGIClGmQ~avIEfARnvlgl-~~A~s  116 (250)
T d1vcoa1          57 RDVSGILVPGGFGVRGIEGKVRAAQYARER--KIP-------------YLGICLGLQIAVIEFARNVAGL-KGANS  116 (250)
T ss_dssp             TTCSCEEECCCCSSTTHHHHHHHHHHHHHT--TCC-------------EEEETHHHHHHHHHHHHHTSCC-TTCEE
T ss_pred             HCCCEEEECCCCCCCCHHHHHHHHHHHHHC--CHH-------------HHHHHHHHHHHHHHHHHHHHHH-HCCCC
T ss_conf             248828956887766357899999999873--616-------------9999887889999999999876-40566


No 21 
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=58.94  E-value=4.5  Score=16.98  Aligned_cols=59  Identities=24%  Similarity=0.293  Sum_probs=38.6

Q ss_pred             CCCCEEEEECCHHHH--HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             399889994882578--999999999985189962885222234772221146335659999999999999877516
Q gi|254780227|r  137 SGVTILHTIGGDDTN--TTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSAT  211 (426)
Q Consensus       137 ~~Id~Li~IGGdgS~--~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~~A~s~  211 (426)
                      .+.|++++-||.|.-  .+.....+|++++  +||..|             .|+||+.|+=..+.-+-.+ .+|.|.
T Consensus        56 ~~~dGIlvPGGFG~RG~eGki~ai~yARen--~iPfLG-------------IClGmQ~avIE~ARnvlg~-~~A~S~  116 (258)
T d1s1ma1          56 KGLDAILVPGGFGYRGVEGMITTARFAREN--NIPYLG-------------ICLGMQVALIDYARHVANM-ENANST  116 (258)
T ss_dssp             TTCSEEEECCCCSSTTHHHHHHHHHHHHHT--TCCEEE-------------ETHHHHHHHHHHHHHHHCC-TTCEET
T ss_pred             CCCCCEEEECCCCCCCHHHHHHHHHHHHHC--CCCHHH-------------HHHHHHHHHHHHHHHHCCC-CCCCCC
T ss_conf             234628851356767788999999999974--861788-------------8888999999999985799-888677


No 22 
>d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Probab=54.95  E-value=5.2  Score=16.56  Aligned_cols=63  Identities=22%  Similarity=0.116  Sum_probs=37.7

Q ss_pred             CHHHHHHHHHHHHH---CCCCEEEEECCHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             74569999999986---39988999488257899-9999999985189962885222234772221146
Q gi|254780227|r  123 DENPLEVSAHHLMQ---SGVTILHTIGGDDTNTT-ACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS  187 (426)
Q Consensus       123 ~~~~~~~~~~~l~~---~~Id~Li~IGGdgS~~~-a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t  187 (426)
                      +.+++..+++.+++   ..-+++|+.=|-|||.- |..|+..+.  +.+.|||-.=.-.--+.+.+|-.
T Consensus        75 ~~~~~~~l~~~i~~~~~~~d~G~VvtHGTDTl~eTA~~L~~~l~--~~~kPVVlTGa~~P~~~~~sDg~  141 (363)
T d1zq1a2          75 KPKHWVKIAHEVAKALNSGDYGVVVAHGTDTMGYTAAALSFMLR--NLGKPVVLVGAQRSSDRPSSDAA  141 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCSEEEEECCSSSHHHHHHHHHHHEE--SCCSCEEEECCSSCTTSTTCSHH
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHC--CCCCCEEEECCCCCCCCCCCCHH
T ss_conf             99999999999998632777737983587739999999999724--89963899633413567775107


No 23 
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=52.83  E-value=5.6  Score=16.35  Aligned_cols=92  Identities=13%  Similarity=0.057  Sum_probs=62.3

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT  109 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~  109 (426)
                      |.||++...-+.|=...++.++-+.+...  |+++.-+.-      .+                                
T Consensus         1 ktIg~i~~~~~~pf~~~~~~gi~~~~~~~--gy~~~~~~~------~~--------------------------------   40 (282)
T d1dbqa_           1 KSIGLLATSSEAAYFAEIIEAVEKNCFQK--GYTLILGNA------WN--------------------------------   40 (282)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHHHHHHHHH--TCEEEEEEC------TT--------------------------------
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEEEC------CC--------------------------------
T ss_conf             98999957797789999999999999986--999999968------99--------------------------------


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             5301110123456745699999999863998899948825789999999999851899628852222347
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDN  179 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDN  179 (426)
                                   +.+....+++.|.+.++|++|+...+.+-.......+     ..++|+|.+....++
T Consensus        41 -------------d~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~-----~~~iPvV~~~~~~~~   92 (282)
T d1dbqa_          41 -------------NLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE-----YRHIPMVVMDWGEAK   92 (282)
T ss_dssp             -------------CHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHH-----TTTSCEEEEECSSCC
T ss_pred             -------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH-----HCCCCCEEEEECCCC
T ss_conf             -------------9899999999999669987863112243135666776-----437972699831366


No 24 
>d1gsoa2 c.30.1.1 (A:-2-103) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Escherichia coli [TaxId: 562]}
Probab=52.42  E-value=5.7  Score=16.31  Aligned_cols=96  Identities=10%  Similarity=0.122  Sum_probs=57.3

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             37999836877514899999999999985699789998383660107991304626988887464078740033678886
Q gi|254780227|r   30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLT  109 (426)
Q Consensus        30 krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~  109 (426)
                      +||.|+-|||=   =|+..+.+.    +.....++|-+ .|..|........                        ..  
T Consensus         3 MkVLvIGsGgR---EhAia~~L~----~s~~~~~l~~~-pgn~g~~~~~~~~------------------------~~--   48 (105)
T d1gsoa2           3 MKVLVIGNGGR---EHALAWKAA----QSPLVETVFVA-PGNAGTALEPALQ------------------------NV--   48 (105)
T ss_dssp             EEEEEEECSHH---HHHHHHHHT----TCTTEEEEEEE-ECCHHHHHSTTEE------------------------EC--
T ss_pred             CEEEEECCCHH---HHHHHHHHH----CCCCCCEEEEE-CCCCCCCHHHHHC------------------------CC--
T ss_conf             78999888879---999999983----38876479995-1877631022330------------------------55--


Q ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             530111012345674569999999986399889994882578999999999985189962885222
Q gi|254780227|r  110 NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPK  175 (426)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPK  175 (426)
                                 ..+..+++.+++..++++|| |++||=..-+..  =|++++.++  +|+|+|=.|
T Consensus        49 -----------~~~~~d~~~i~~~a~~~~id-lvviGPE~pL~~--Gl~D~l~~~--gI~vfGP~k   98 (105)
T d1gsoa2          49 -----------AIGVTDIPALLDFAQNEKID-LTIVGPEAPLVK--GVVDTFRAA--GLKIFGPTA   98 (105)
T ss_dssp             -----------CCCTTCHHHHHHHHHHTTCS-EEEECSHHHHHT--THHHHHHHT--TCCEESCCT
T ss_pred             -----------CCCCCCHHHHHHHHHHHCCC-EEEECCHHHHHH--HHHHHHHHC--CCEEECCCH
T ss_conf             -----------54357689999899982968-899770888876--999999988--797999287


No 25 
>d4pgaa_ c.88.1.1 (A:) Glutaminase-asparaginase {Pseudomonas sp., 7A [TaxId: 306]}
Probab=51.65  E-value=5.9  Score=16.23  Aligned_cols=71  Identities=14%  Similarity=0.120  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHH----HHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             45699999999----86399889994882578999999999985189962885222234772221146335659999
Q gi|254780227|r  124 ENPLEVSAHHL----MQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQV  196 (426)
Q Consensus       124 ~~~~~~~~~~l----~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~  196 (426)
                      .+++.++.+.+    +..+.|++|+.-|-|||.-.+.+...+  .+.+.|||-.-.-+--|.+.+|-..-+-.|+..
T Consensus        65 ~~~w~~l~~~i~~~~~~~~~dG~Vi~HGTDTm~~tA~~L~~~--~~~~kpvVlTGs~~p~~~~~sD~~~Nl~~A~~~  139 (330)
T d4pgaa_          65 NDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLNLV--QKTDKPIVVVGSMRPGTAMSADGMLNLYNAVAV  139 (330)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCSEEEEECCSTTHHHHHHHHHHH--CCCCSCEEEECCSSCTTSTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH--CCCCCCEEEECCCHHCCCCCCCCCCCHHHHHHH
T ss_conf             999999999999874067877089967867199999999874--178997798400000015676220037899999


No 26 
>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=49.93  E-value=5.3  Score=16.52  Aligned_cols=31  Identities=6%  Similarity=-0.011  Sum_probs=16.3

Q ss_pred             CEEEEECCHHHHHHH-HHHHHHHHHCCCCCEEE
Q ss_conf             889994882578999-99999998518996288
Q gi|254780227|r  140 TILHTIGGDDTNTTA-CDLLRYLKEKNYNITVV  171 (426)
Q Consensus       140 d~Li~IGGdgS~~~a-~~L~e~~~~~~~~i~vi  171 (426)
                      ...++|=|||++... ..|.. +..++.++.+|
T Consensus        76 ~~Vv~i~GDGsf~m~~~eL~t-a~~~~l~i~~i  107 (196)
T d1pvda3          76 KRVILFIGDGSLQLTVQEIST-MIRWGLKPYLF  107 (196)
T ss_dssp             CCEEEEEEHHHHHHHGGGHHH-HHHTTCCCEEE
T ss_pred             CCEEECCCCCCCCCCCCCCCC-CCCCCCCCEEE
T ss_conf             703403676444344334320-00025231399


No 27 
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}
Probab=49.11  E-value=6.5  Score=15.97  Aligned_cols=144  Identities=11%  Similarity=0.089  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHCCCCEE--EEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCC---CCCCC-C-CCCCCCCHHHHHHHHH
Q ss_conf             69999999986399889--9948825789999999999851899628852222---34772-2-2114633565999999
Q gi|254780227|r  126 PLEVSAHHLMQSGVTIL--HTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKT---IDNDI-I-PIHQSLGALTAAQVSA  198 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~L--i~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKT---IDNDi-~-~td~tiGfdTA~~~~a  198 (426)
                      .++.+.+.+++.+-.+|  ++.+||.+..+...+.+.+.+.+.++-=+|+|=+   -|..+ + -.+.++--.+-...+-
T Consensus         3 ri~~~f~~lk~~~~~ali~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~   82 (267)
T d1qopa_           3 RYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCF   82 (267)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
T ss_conf             69999999997599448998818479879999999999876999999789877654555387765410114540244456


Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCC-----CCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             99999998775166616999976987-----4289999874014332310111111100014576523287865598999
Q gi|254780227|r  199 CFFDNISNERSATPRSLIIHEVMGRN-----CGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVE  273 (426)
Q Consensus       199 ~~i~~l~~~A~s~~~~~~iVEvMGR~-----aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~  273 (426)
                      +.+..++..-  ..-.+.+   ||=.     -|.-.                   +......-+.+-+++|+.|++....
T Consensus        83 ~~~~~~r~~~--~~~pivl---m~Y~N~i~~~G~~~-------------------f~~~~~~~Gv~GliipDlP~ee~~~  138 (267)
T d1qopa_          83 EMLAIIREKH--PTIPIGL---LMYANLVFNNGIDA-------------------FYARCEQVGVDSVLVADVPVEESAP  138 (267)
T ss_dssp             HHHHHHHHHC--SSSCEEE---EECHHHHHTTCHHH-------------------HHHHHHHHTCCEEEETTCCGGGCHH
T ss_pred             HHHHHHCCCC--CCCCEEE---EEECCCHHHCCCHH-------------------HHHHHHHCCCCCEECCCHHHHHHHH
T ss_conf             5654401234--6540688---85215220068157-------------------8999986597721245403454678


Q ss_pred             HHHHHHHHHCCCC-EEEEEECCCC
Q ss_conf             9999998502895-3899504211
Q gi|254780227|r  274 IERLSKVMEKKGS-VAIFVSEGAC  296 (426)
Q Consensus       274 ~~~i~~~~~~~~~-~vIVvsEG~~  296 (426)
                         +.+..++++- .+-.++....
T Consensus       139 ---~~~~~~~~~l~~I~lvaPtt~  159 (267)
T d1qopa_         139 ---FRQAALRHNIAPIFICPPNAD  159 (267)
T ss_dssp             ---HHHHHHHTTCEEECEECTTCC
T ss_pred             ---HHHHHHCCCCEEEEEECCCCC
T ss_conf             ---877651257608997155662


No 28 
>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]}
Probab=48.69  E-value=6.5  Score=15.93  Aligned_cols=52  Identities=12%  Similarity=0.160  Sum_probs=38.5

Q ss_pred             CHHHHHHHHHHHHHCCC-----CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             74569999999986399-----88999488257899999999998518996288522223
Q gi|254780227|r  123 DENPLEVSAHHLMQSGV-----TILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTI  177 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~I-----d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTI  177 (426)
                      +-+.++++.+.+.++++     |.+|.+||.-....|.-.|..+   .-+++.|-||-|.
T Consensus        82 s~~~~~~i~~~~~~~~~~~~r~d~IiaiGGG~v~D~ak~~A~~y---~rgi~~i~vPTtl  138 (389)
T d1sg6a_          82 SRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTY---MRGVRYVQVPTTL  138 (389)
T ss_dssp             SHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHG---GGCCEEEEEECSH
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHH---HCCCCEEEECCCH
T ss_conf             99999999999996288767775699965634778899999998---5587636731402


No 29 
>d1wsaa_ c.88.1.1 (A:) Asparaginase type II {Wolinella succinogenes [TaxId: 844]}
Probab=48.11  E-value=6.7  Score=15.88  Aligned_cols=70  Identities=13%  Similarity=0.041  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf             7456999999998----63998899948825789999999999851899628852222347722211463356599
Q gi|254780227|r  123 DENPLEVSAHHLM----QSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA  194 (426)
Q Consensus       123 ~~~~~~~~~~~l~----~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~  194 (426)
                      +++++.++++.++    +.+.|++|+.-|-|||.-.+.+..+.-..  +.|||-.=.-.--|.+++|-..-+-.|+
T Consensus        62 ~~~~w~~l~~~i~~~~~~~~~dGiVv~HGTDTm~~ta~~Ls~~~~~--~kPVV~TGa~~p~~~~~sD~~~Nl~~Av  135 (328)
T d1wsaa_          62 TGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVKS--QKPVVLVGAMRPGSSMSADGPMNLYNAV  135 (328)
T ss_dssp             CHHHHHHHHHHHHHHHHSTTCCCEEEECCSSSHHHHHHHHHHHCCC--SSCEEEECCSSCTTSTTCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCC--CCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf             9999999999999874267876699968967499999999986157--9987984366567776742057788999


No 30 
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}
Probab=45.99  E-value=6.7  Score=15.85  Aligned_cols=55  Identities=20%  Similarity=0.175  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf             99999999863998899948825789999999999851899628852222347722211463356599
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA  194 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~  194 (426)
                      .+...+.+...+.++++.-||.|+........+..             +-+..++|..=.|+|++.-+
T Consensus        36 ~~~~~~~l~~~~~~~iils~Gpg~~~~~~~~~~i~-------------~~l~~~iPiLGIClG~Q~la   90 (192)
T d1i7qb_          36 AEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELL-------------QRLRGQLPIIGICLGHQAIV   90 (192)
T ss_dssp             HHHHHHHHHHCSSEEEEECCCSSCGGGSTTHHHHH-------------HHHBTTBCEEEETHHHHHHH
T ss_pred             CCCCHHHHHHCCCCEEEECCCCCCCCCCCCCHHHH-------------HHHHCCCCEEEEEHHHHHHH
T ss_conf             33119999830998687257552222222314567-------------76634764875218889999


No 31 
>d1agxa_ c.88.1.1 (A:) Glutaminase-asparaginase {Acinetobacter glutaminasificans [TaxId: 474]}
Probab=45.47  E-value=7.3  Score=15.62  Aligned_cols=60  Identities=13%  Similarity=0.109  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             456999999998----63998899948825789999999999851899628852222347722211
Q gi|254780227|r  124 ENPLEVSAHHLM----QSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH  185 (426)
Q Consensus       124 ~~~~~~~~~~l~----~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td  185 (426)
                      .+++..+++.++    +.+.|++|+.-|-|||.-.+.+..+.-  +.+.|||-.=.-+--|-+.+|
T Consensus        64 ~~~w~~la~~i~~~~~~~~~dG~VVtHGTDTm~~TA~~Ls~~l--~~~kPVVlTGsqrp~~~~~sD  127 (331)
T d1agxa_          64 DKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFFLNLVV--HTDKPIVLVGSMRPSTALSAD  127 (331)
T ss_dssp             HHHHHHHHHHHHHHHTSTTCCEEEEECCGGGHHHHHHHHHHHC--CCSSCEEEECCSSCTTSTTCS
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHH--CCCCCEEEEEECCCCCCCCCC
T ss_conf             9999999999999854667764999668675999999999986--458728997102316777840


No 32 
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Probab=44.70  E-value=7.5  Score=15.54  Aligned_cols=80  Identities=15%  Similarity=0.193  Sum_probs=43.2

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEECC-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             7456999999998639988999488-257899999999998518996288522223477222114633565999999999
Q gi|254780227|r  123 DENPLEVSAHHLMQSGVTILHTIGG-DDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFF  201 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~Id~Li~IGG-dgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i  201 (426)
                      ..+.+...+++.++.+.+.+|.+-| .+.+.++..=       ...+||||||-.-       .+--|+|+         
T Consensus        41 tp~rl~~~~~~~~~~~~~viIa~AG~aa~Lpgvva~-------~t~~PVIgVP~~~-------~~~~G~d~---------   97 (155)
T d1xmpa_          41 TPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAA-------KTNLPVIGVPVQS-------KALNGLDS---------   97 (155)
T ss_dssp             SHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHT-------TCCSCEEEEEECC-------TTTTTHHH---------
T ss_pred             CHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHH-------HCCCEEEEEEEEC-------CCCCCCCC---------
T ss_conf             968898899999860514887541467776257887-------3660078887401-------34767233---------


Q ss_pred             HHHHHHHHHCCCCEEEEEECCC------CCCHHH
Q ss_conf             9999877516661699997698------742899
Q gi|254780227|r  202 DNISNERSATPRSLIIHEVMGR------NCGWLT  229 (426)
Q Consensus       202 ~~l~~~A~s~~~~~~iVEvMGR------~aG~LA  229 (426)
                        +.+.. .++..+-+ =+|+=      +|+++|
T Consensus        98 --llS~v-qMP~Gipv-~tv~v~~~~~~nAa~~A  127 (155)
T d1xmpa_          98 --LLSIV-QMPGGVPV-ATVAIGKAGSTNAGLLA  127 (155)
T ss_dssp             --HHHHH-CCCTTCCC-EECCSSHHHHHHHHHHH
T ss_pred             --HHHHH-HCCCCCCC-EEEEECCCCHHHHHHHH
T ss_conf             --89998-47468996-58983586417799999


No 33 
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Probab=44.65  E-value=7.5  Score=15.54  Aligned_cols=48  Identities=17%  Similarity=0.262  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             45699999999863998899948-82578999999999985189962885222234
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTIG-GDDTNTTACDLLRYLKEKNYNITVVGLPKTID  178 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~IG-GdgS~~~a~~L~e~~~~~~~~i~vigiPKTID  178 (426)
                      .+.+...+++.++.+++.+|++- +.+.+.+...-       ....||||+|-..+
T Consensus        43 p~~l~~~~~~~e~~~~~viIa~AG~aaaLpgvva~-------~t~~PVIgvP~~~~   91 (159)
T d1u11a_          43 PDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAA-------WTRLPVLGVPVESR   91 (159)
T ss_dssp             HHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH-------HCSSCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEE-------ECCEEEEEECCCCC
T ss_conf             68899999999865974899871588877663322-------13505788524656


No 34 
>d2ciwa1 a.39.3.1 (A:0-119) Cloroperoxidase {Fungus (Caldariomyces fumago) [TaxId: 5474]}
Probab=42.67  E-value=3.7  Score=17.50  Aligned_cols=10  Identities=20%  Similarity=0.421  Sum_probs=7.7

Q ss_pred             CCCCCHHHHH
Q ss_conf             6877514899
Q gi|254780227|r   37 AGGIAPCLSS   46 (426)
Q Consensus        37 sGG~aPG~N~   46 (426)
                      +=|||||||+
T Consensus        26 ~RgPCPgLNa   35 (120)
T d2ciwa1          26 SRAPCPALNA   35 (120)
T ss_dssp             CCCSCHHHHH
T ss_pred             CCCCCHHHHH
T ss_conf             6688742677


No 35 
>d1o7ja_ c.88.1.1 (A:) Asparaginase type II {Erwinia chrysanthemi [TaxId: 556]}
Probab=41.73  E-value=8.4  Score=15.25  Aligned_cols=70  Identities=14%  Similarity=0.103  Sum_probs=43.0

Q ss_pred             CHHHHHHHHHHHH----HCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf             7456999999998----63998899948825789999999999851899628852222347722211463356599
Q gi|254780227|r  123 DENPLEVSAHHLM----QSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA  194 (426)
Q Consensus       123 ~~~~~~~~~~~l~----~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~  194 (426)
                      +.+++.++++.++    ..+.|++|+.-|-|||.-.+.+..+.-..  +.|||-.=.-.--+...+|-...+-.|+
T Consensus        64 ~~~~~~~la~~i~~~~~~~~~dgiVv~HGTDTm~~ta~~Ls~~l~~--~kPVV~TGs~~p~~~~~sDa~~Nl~~A~  137 (325)
T d1o7ja_          64 TGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVKS--DKPVVFVAAMRPATAISADGPMNLLEAV  137 (325)
T ss_dssp             CHHHHHHHHHHHHHHHTSTTCCEEEEECCSTTHHHHHHHHHHHCCC--CSCEEEECCSSCTTSTTCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCC--CCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf             9999999999999985346766179954857599999999998457--9986995345243456875487999999


No 36 
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=39.13  E-value=9.2  Score=14.99  Aligned_cols=121  Identities=9%  Similarity=0.005  Sum_probs=72.3

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             63379998368775148999999999999856997899983836601079913046269888874640787400336788
Q gi|254780227|r   28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVK  107 (426)
Q Consensus        28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~  107 (426)
                      |-|-|||+...-+.|-.|..+.++.+.+...  |+.++-+.-+      .                              
T Consensus         1 s~k~Igvi~p~~~~~~~~~~~~~i~~~~~~~--Gy~~~~~~s~------~------------------------------   42 (255)
T d1byka_           1 SDKVVAIIVTRLDSLSENLAVQTMLPAFYEQ--GYDPIMMESQ------F------------------------------   42 (255)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHHHHHHHHHHH--TCEEEEEECT------T------------------------------
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECC------C------------------------------
T ss_conf             9988999969988989999999999999985--9999999489------9------------------------------


Q ss_pred             CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             86530111012345674569999999986399889994882578999999999985189962885222234772221146
Q gi|254780227|r  108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQS  187 (426)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~t  187 (426)
                                     +.+.....++.+.++++|++|+.+=+....      +.+...  +++++.+    +.|.++.+ +
T Consensus        43 ---------------d~~~~~~~i~~l~~~~vdgiIi~~~~~~~~------~~~~~~--~~p~v~i----~~~~~~~~-~   94 (255)
T d1byka_          43 ---------------SPQLVAEHLGVLKRRNIDGVVLFGFTGITE------EMLAHW--QSSLVLL----ARDAKGFA-S   94 (255)
T ss_dssp             ---------------CHHHHHHHHHHHHTTTCCEEEEECCTTCCT------TTSGGG--SSSEEEE----SSCCSSCE-E
T ss_pred             ---------------CHHHHHHHHHHHHHCCCCCEEECCCCCHHH------HHHHHC--CCCEEEE----CCCCCCCC-E
T ss_conf             ---------------989999999999832655201002442399------999976--9999981----66789998-8


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             3356599999999999998775166616999
Q gi|254780227|r  188 LGALTAAQVSACFFDNISNERSATPRSLIIH  218 (426)
Q Consensus       188 iGfdTA~~~~a~~i~~l~~~A~s~~~~~~iV  218 (426)
                      +++|- -+...++++.+. + .. ++++.++
T Consensus        95 v~~D~-~~~g~~~~~~L~-~-~g-~~~i~~i  121 (255)
T d1byka_          95 VCYDD-EGAIKILMQRLY-D-QG-HRNISYL  121 (255)
T ss_dssp             EEECH-HHHHHHHHHHHH-H-TT-CCCEEEE
T ss_pred             EEECC-HHHHHHHHHHHH-H-HC-CCCCCCC
T ss_conf             99674-799999999999-8-51-2543235


No 37 
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}
Probab=37.82  E-value=4.6  Score=16.94  Aligned_cols=32  Identities=16%  Similarity=0.109  Sum_probs=15.6

Q ss_pred             CEEEEECCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             88999488257899999999998518996288
Q gi|254780227|r  140 TILHTIGGDDTNTTACDLLRYLKEKNYNITVV  171 (426)
Q Consensus       140 d~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vi  171 (426)
                      .-.++|.|||++.....=...+.+.+.++.+|
T Consensus        79 ~~vv~i~GDG~f~~~~~el~ta~~~~lpv~~i  110 (183)
T d1q6za3          79 RQVIAVIGDGSANYSISALWTAAQYNIPTIFV  110 (183)
T ss_dssp             SCEEEEEEHHHHTTTGGGHHHHHHHTCCCEEE
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHCCCEEEE
T ss_conf             52688315644334517788999959797999


No 38 
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=36.47  E-value=10  Score=14.73  Aligned_cols=80  Identities=13%  Similarity=0.144  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEE-CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             4569999999986399889994-882578999999999985189962885222234772221146335659999999999
Q gi|254780227|r  124 ENPLEVSAHHLMQSGVTILHTI-GGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFD  202 (426)
Q Consensus       124 ~~~~~~~~~~l~~~~Id~Li~I-GGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~  202 (426)
                      .+.+...++.+++.+++.+|+. ||.+.+.++  ++-     ...+||||+|-.-       .+--|.|           
T Consensus        41 p~rl~~~~~~~~~~~~~viIa~AG~aa~Lpgv--vA~-----~t~~PVIgvP~~~-------~~~~G~d-----------   95 (169)
T d1o4va_          41 PDRMFEYAKNAEERGIEVIIAGAGGAAHLPGM--VAS-----ITHLPVIGVPVKT-------STLNGLD-----------   95 (169)
T ss_dssp             HHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH--HHH-----HCSSCEEEEEECC-------TTTTTHH-----------
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCCCCHHH--HHH-----HCCEEEEECCCCC-------CCCCCHH-----------
T ss_conf             79999999999864982899960577675678--888-----3561488546644-------3476677-----------


Q ss_pred             HHHHHHHHCCCCEEEEEECCCCCCHHHH
Q ss_conf             9998775166616999976987428999
Q gi|254780227|r  203 NISNERSATPRSLIIHEVMGRNCGWLTA  230 (426)
Q Consensus       203 ~l~~~A~s~~~~~~iVEvMGR~aG~LAl  230 (426)
                      .+.+.. .++..+-+ =+++=..|+=|.
T Consensus        96 aLlS~l-qmp~gvpV-atV~Id~~~nAA  121 (169)
T d1o4va_          96 SLFSIV-QMPGGVPV-ATVAINNAKNAG  121 (169)
T ss_dssp             HHHHHH-TCCTTCCC-EECCTTCHHHHH
T ss_pred             HHHHHC-CCCCCCCC-EEEECCCHHHHH
T ss_conf             798860-48766880-234427648999


No 39 
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Probab=36.10  E-value=10  Score=14.69  Aligned_cols=49  Identities=14%  Similarity=0.139  Sum_probs=30.6

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEECC-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             7456999999998639988999488-2578999999999985189962885222234
Q gi|254780227|r  123 DENPLEVSAHHLMQSGVTILHTIGG-DDTNTTACDLLRYLKEKNYNITVVGLPKTID  178 (426)
Q Consensus       123 ~~~~~~~~~~~l~~~~Id~Li~IGG-dgS~~~a~~L~e~~~~~~~~i~vigiPKTID  178 (426)
                      .++.+...+++.++.+++.+|.+-| ...+.++-.=       ...+||||||-..+
T Consensus        41 tp~~l~~~~~~~~~~~~~ViIa~AG~aa~LpgvvA~-------~t~~PVIgVP~~~~   90 (163)
T d1qcza_          41 TPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAA-------KTLVPVLGVPVQSA   90 (163)
T ss_dssp             CHHHHHHHHHHTTTTTCSEEEEEECSSCCHHHHHHH-------SCSSCEEEEECCCT
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHH-------HCCCEEEECCCCCC
T ss_conf             889999999999974976999852688765204667-------34411451133112


No 40 
>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}
Probab=35.40  E-value=10  Score=14.62  Aligned_cols=40  Identities=18%  Similarity=0.267  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             9999999986399889994882578999999999985189962885
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG  172 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vig  172 (426)
                      -+.+++.|++++|+..+.+-|+..+.-...|    .+  .+|.+|.
T Consensus         8 ~d~l~~~L~~~Gv~~vFg~pG~~~~~l~~al----~~--~~i~~i~   47 (181)
T d1ozha2           8 ADLVVSQLEAQGVRQVFGIPGAKIDKVFDSL----LD--SSIRIIP   47 (181)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCTTTHHHHHHG----GG--SSSEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHH----HH--HHCCCCC
T ss_conf             9999999998799999993857489999999----86--4011244


No 41 
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=35.34  E-value=10  Score=14.61  Aligned_cols=126  Identities=11%  Similarity=0.058  Sum_probs=70.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             99983687751489999999999998569978999838366010799130462698888746407874003367888653
Q gi|254780227|r   32 VAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNF  111 (426)
Q Consensus        32 I~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~~~~~  111 (426)
                      ||+++.-=.-|+.+.++.++-+.|...  |+++.-+.-+.             .                          
T Consensus         3 igv~~~~l~~~~~~~i~~~i~~~a~~~--Gy~v~v~~~~~-------------~--------------------------   41 (271)
T d1jyea_           3 IGVATSSLALHAPSQIVAAILSRADQL--GASVVVSMVER-------------S--------------------------   41 (271)
T ss_dssp             EEEEESCTTSHHHHHHHHHHHHHHHHT--TCEEEEEECCS-------------S--------------------------
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCC-------------C--------------------------
T ss_conf             999949988758999999999999985--99899997999-------------9--------------------------


Q ss_pred             CHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf             01110123456745699999999863998899948825789999999999851899628852222347722211463356
Q gi|254780227|r  112 SDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGAL  191 (426)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfd  191 (426)
                                 ..+.....++.|.+.++|++|+.+-.+....   +.+++.  ..++|||.+=...+..++    ++.+|
T Consensus        42 -----------~~~~~~~~l~~l~~~~vdgiIl~~~~~~~~~---~~~~~~--~~~iPvV~~d~~~~~~~~----~V~~D  101 (271)
T d1jyea_          42 -----------GVEACKTAVHNLLAQRVSGLIINYPLDDQDA---IAVEAA--CTNVPALFLDVSDQTPIN----SIIFS  101 (271)
T ss_dssp             -----------SHHHHHHHHHHHHTTTCSCEEEESCCCHHHH---HHHHHH--TTTSCEEESSSCTTSSSC----EEEEC
T ss_pred             -----------CHHHHHHHHHHHHHCCCCEEEECCCCCCHHH---HHHHHH--HCCCCEEEEECCCCCCCC----CCCCC
T ss_conf             -----------9999999999999659998995166674269---999998--639984431023445677----33433


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             599999999999998775166616999976987
Q gi|254780227|r  192 TAAQVSACFFDNISNERSATPRSLIIHEVMGRN  224 (426)
Q Consensus       192 TA~~~~a~~i~~l~~~A~s~~~~~~iVEvMGR~  224 (426)
                      -. +.+..+++.+..  ..+ +++.++-  |..
T Consensus       102 ~~-~~~~~~~~~L~~--~G~-~~i~~i~--~~~  128 (271)
T d1jyea_         102 HE-DGTRLGVEHLVA--LGH-QQIALLA--GPL  128 (271)
T ss_dssp             HH-HHHHHHHHHHHH--HTC-CSEEEEE--CCT
T ss_pred             HH-HCCCCCEEEEEC--CCC-CCCCCCC--CCC
T ss_conf             11-022100012201--124-5433222--344


No 42 
>d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Haloferax volcanii [TaxId: 2246]}
Probab=34.98  E-value=11  Score=14.58  Aligned_cols=52  Identities=12%  Similarity=0.064  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf             56999999998639988999488257899999999998518996288522223477222
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIP  183 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~  183 (426)
                      ..++.+++.+++.+-+-+++|||-.-+..+..+       --.+-+=-||...+.|..+
T Consensus        79 ~s~~~a~~~~~~~~~~~i~IiGG~~iy~~~l~~-------~d~i~lT~I~~~~~gD~~F  130 (157)
T d1vdra_          79 ASVEEAVDIAASLDAETAYVIGGAAIYALFQPH-------LDRMVLSRVPGEYEGDTYY  130 (157)
T ss_dssp             SSHHHHHHHHHHTTCSCEEEEECHHHHHHHGGG-------CSEEEEEEEEEECCCSEEC
T ss_pred             EEHHHHHHHHHCCCCCEEEEEECHHHHHHHCCC-------CCEEEEEEECCCCCCCEEC
T ss_conf             029999999751798469999363786531131-------7999999857864688888


No 43 
>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}
Probab=34.49  E-value=11  Score=14.53  Aligned_cols=27  Identities=11%  Similarity=0.116  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf             999999998639988999488257899
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTT  153 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~  153 (426)
                      .+.+++.|+++||+.++.+-|+..+.-
T Consensus         4 ~~~i~e~L~~~GV~~vFgipG~~~~~~   30 (180)
T d1q6za2           4 HGTTYELLRRQGIDTVFGNPGSNALPF   30 (180)
T ss_dssp             HHHHHHHHHHTTCCEEEECCCGGGHHH
T ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf             999999999889999999894768999


No 44 
>d1u6ka1 c.127.1.1 (A:2-283) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=31.92  E-value=12  Score=14.26  Aligned_cols=49  Identities=10%  Similarity=0.053  Sum_probs=37.5

Q ss_pred             CHHHHHHHHHH----HHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             74569999999----9863998899948825789999999999851899628852
Q gi|254780227|r  123 DENPLEVSAHH----LMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL  173 (426)
Q Consensus       123 ~~~~~~~~~~~----l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi  173 (426)
                      ++++.++.+++    +++.+=|-.|+|+=|...-+-..-.|.+++.  +||+|.|
T Consensus        44 ~pe~~e~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~--giP~ivI   96 (282)
T d1u6ka1          44 DPECVEAAVEMALDIAEDFEPDFIVYGGPNPAAPGPSKAREMLADS--EYPAVII   96 (282)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCSEEEEECSCTTSHHHHHHHHHHHTS--SSCEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHC--CCCEEEE
T ss_conf             9788888998888788851999899978988899957799999756--9987997


No 45 
>d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011 {Haemophilus influenzae [TaxId: 727]}
Probab=30.71  E-value=12  Score=14.13  Aligned_cols=27  Identities=19%  Similarity=-0.017  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHCCCCEEEEEC---CHHHHH
Q ss_conf             699999999863998899948---825789
Q gi|254780227|r  126 PLEVSAHHLMQSGVTILHTIG---GDDTNT  152 (426)
Q Consensus       126 ~~~~~~~~l~~~~Id~Li~IG---GdgS~~  152 (426)
                      ....+.+.|++.+...++.-=   .|-|++
T Consensus        60 ~v~~~~~~l~~~~~~~~~~Kv~s~~DStlR   89 (412)
T d1yzya1          60 QSLRAYQWLKENGCTQFYFKYCSTFDSTAK   89 (412)
T ss_dssp             HHHHHHHHHHHTTCCSEEEECCTTCCCCTT
T ss_pred             HHHHHHHHHHHCCCCEEEEEEEECCCCCCC
T ss_conf             999999999863897158999731337776


No 46 
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=30.45  E-value=13  Score=14.10  Aligned_cols=97  Identities=10%  Similarity=0.039  Sum_probs=63.3

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             63379998368775148999999999999856997899983836601079913046269888874640787400336788
Q gi|254780227|r   28 VAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVK  107 (426)
Q Consensus        28 ~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR~~  107 (426)
                      +.+|||++.....-|-...+..|+-+.++.+  |+++.-+        ..     .+.                      
T Consensus         2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~--G~~v~~~--------~~-----~~~----------------------   44 (316)
T d1tjya_           2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKAL--GIDVTYD--------GP-----TEP----------------------   44 (316)
T ss_dssp             CCCEEEEECSSSSSHHHHHHHHHHHHHHHHH--TCEEEEC--------CC-----SSC----------------------
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--CCEEEEE--------EC-----CCC----------------------
T ss_conf             7889999938999989999999999999981--9979999--------79-----999----------------------


Q ss_pred             CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             8653011101234567456999999998639988999488257899999999998518996288522223477
Q gi|254780227|r  108 LTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND  180 (426)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDND  180 (426)
                                     +.+.....++++...+.|++|+...+.+.... .+.+ +..  .+++++.+.-.+.++
T Consensus        45 ---------------d~~~q~~~i~~~i~~~~dgIIi~~~~~~~~~~-~~~~-a~~--~gi~vv~~d~~~~~~   98 (316)
T d1tjya_          45 ---------------SVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCP-ALKR-AMQ--RGVKILTWDSDTKPE   98 (316)
T ss_dssp             ---------------CHHHHHHHHHHHHHTTCSEEEECCSSSSTTHH-HHHH-HHH--TTCEEEEESSCCCGG
T ss_pred             ---------------CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH-HHHH-HHC--CCCCCEECCCCCCCC
T ss_conf             ---------------99999999999996599866411443201245-5665-421--465411114533222


No 47 
>d2d6fa2 c.88.1.1 (A:84-435) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.96  E-value=13  Score=14.05  Aligned_cols=61  Identities=15%  Similarity=0.097  Sum_probs=38.6

Q ss_pred             CHHHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             7456999999998---63998899948825789999999999851899628852222347722211
Q gi|254780227|r  123 DENPLEVSAHHLM---QSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH  185 (426)
Q Consensus       123 ~~~~~~~~~~~l~---~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td  185 (426)
                      +.+++.++++.++   +.+.|++|+.-|-|||.-.+.+....-+.  +.|||-.=.-+--+-+++|
T Consensus        66 ~~~~w~~la~~i~~~~~~~~dG~VVtHGTDTl~~TA~~Ls~~l~~--~kPVVlTGa~rp~~~~~sD  129 (352)
T d2d6fa2          66 KPEYWVETARAVYGEIKDGADGVVVAHGTDTMHYTSAALSFMLRT--PVPVVFTGAQRSSDRPSSD  129 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCSEEEEECCTTTHHHHHHHHHHHEEC--SSCEEEECCSSCTTSTTCT
T ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCC--CCCEEEECCCCCCCCCCCC
T ss_conf             999999999999986035677499965832699999999987266--9998996555246676762


No 48 
>d1ig3a2 c.100.1.1 (A:10-178) Thiamin pyrophosphokinase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.33  E-value=13  Score=13.98  Aligned_cols=127  Identities=13%  Similarity=0.047  Sum_probs=71.1

Q ss_pred             CHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC----------CCE--ECCCCC
Q ss_conf             21210348763379998368775148999999999999856997899983836601079----------913--046269
Q gi|254780227|r   19 VLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLD----------DKI--TITEDM   86 (426)
Q Consensus        19 ~~~~~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~----------~~~--~l~~l~   86 (426)
                      |..++..+-. .+.+++..-.|-|.   ....+..      +-.-.+..-+|..-|++-          +.+  +++..+
T Consensus        18 p~~~~~~~~~-~~~aliiLN~pi~~---~~~~lw~------~a~~~I~aDGGAN~L~d~~~~~~~~~~PD~IiGDfDSi~   87 (169)
T d1ig3a2          18 PLEPLLPTGN-LKYCLVVLNQPLDA---RFRHLWK------KALLRACADGGANHLYDLTEGERESFLPEFVSGDFDSIR   87 (169)
T ss_dssp             TTGGGSSSCC-CCEEEEECSSCCCT---THHHHHH------HCSEEEEETTHHHHHHHTCTTCGGGCCCSEEEECTTSSC
T ss_pred             CCCCCCCCCC-CCEEEEEECCCCCH---HHHHHHH------HCCEEEEECCHHHHHHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf             5334689887-47799990898488---8999997------478799974779999987532023799998976688898


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH------CCCCEEEEECC-----HHHHHHHH
Q ss_conf             88887464078740033678886530111012345674569999999986------39988999488-----25789999
Q gi|254780227|r   87 RQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQ------SGVTILHTIGG-----DDTNTTAC  155 (426)
Q Consensus        87 ~~~v~~~~~~GGt~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~Id~Li~IGG-----dgS~~~a~  155 (426)
                      .+..+.+...|-.++... .               ++..+++++++-+.+      .+++.++++|+     |=++....
T Consensus        88 ~~~~~~~~~~g~~ii~~~-d---------------QD~TD~eKAl~~~~~~~~~~~~~~~~I~vlG~~GGR~DH~lanl~  151 (169)
T d1ig3a2          88 PEVKEYYTKKGCDLISTP-D---------------QDHTDFTKCLQVLQRKIEEKELQVDVIVTLGGLGGRFDQIMASVN  151 (169)
T ss_dssp             HHHHHHHHHTTCEEEECC-C---------------TTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSSCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEEECC-C---------------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf             578899986597587786-6---------------575669999999997414431699879999278882879999999


Q ss_pred             HHHHHHHHCCCCCEEEEE
Q ss_conf             999999851899628852
Q gi|254780227|r  156 DLLRYLKEKNYNITVVGL  173 (426)
Q Consensus       156 ~L~e~~~~~~~~i~vigi  173 (426)
                      .|.++.+  -.+++||-+
T Consensus       152 ~L~~~~~--~~~~~VIll  167 (169)
T d1ig3a2         152 TLFQATH--ITPVPIIII  167 (169)
T ss_dssp             HHHHGGG--TCSSCEEEE
T ss_pred             HHHHHHC--CCCCCEEEE
T ss_conf             9997024--799847983


No 49 
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=27.98  E-value=14  Score=13.83  Aligned_cols=50  Identities=14%  Similarity=0.015  Sum_probs=24.2

Q ss_pred             HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf             999863998899948825789999999999851899628852222347722211463356599
Q gi|254780227|r  132 HHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAA  194 (426)
Q Consensus       132 ~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~  194 (426)
                      +.+.++..++++.-||.+.......... .            .+-+.+++|..=.|+|++--+
T Consensus        37 ~~~~~~~~~gvilsgg~~~~~~~~~~~~-i------------~~~~~~~~PiLGIClG~Q~l~   86 (188)
T d1wl8a1          37 EEIKAMNPKGIIFSGGPSLENTGNCEKV-L------------EHYDEFNVPILGICLGHQLIA   86 (188)
T ss_dssp             HHHHHTCCSEEEECCCSCTTCCTTHHHH-H------------HTGGGTCSCEEEETHHHHHHH
T ss_pred             HHHHHHCCCEEEECCCCCCCCCCCCCCC-C------------CCCCCCCCCEEEHHHHHHHHH
T ss_conf             9986423662442167641034543101-1------------101112201222256665466


No 50 
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.77  E-value=12  Score=14.29  Aligned_cols=43  Identities=14%  Similarity=0.211  Sum_probs=25.9

Q ss_pred             HHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             210348763379998368775148999999999999856997899983836
Q gi|254780227|r   21 SFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGY   71 (426)
Q Consensus        21 ~~~~~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~~~G~   71 (426)
                      +.|++.|.-|||.|..|||.=    +++..  ..++.  .+.++++++.-+
T Consensus         2 ~il~~~~~gkKv~vA~SGGvD----Ssvll--~lL~~--~g~~v~~~~~~~   44 (188)
T d1k92a1           2 TILKHLPVGQRIGIAFSGGLD----TSAAL--LWMRQ--KGAVPYAYTANL   44 (188)
T ss_dssp             CEECSCCTTSEEEEECCSSHH----HHHHH--HHHHH--TTCEEEEEEEEC
T ss_pred             CCCCCCCCCCEEEEEECCCHH----HHHHH--HHHHH--CCCCCEEEEEEC
T ss_conf             410138999989999579779----99999--99998--599473985105


No 51 
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.53  E-value=14  Score=13.78  Aligned_cols=81  Identities=20%  Similarity=0.099  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999863998899948825789999999999851899628852222347722211463356599999999999998
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISN  206 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l~~  206 (426)
                      -+.+++.|+++||+.++.+-|+..+.-...|.    + ..+|.+|...         -|      .++-+.|..-.    
T Consensus         6 ~~~i~~~L~~~Gv~~vFgipG~~~~~l~~al~----~-~~~i~~i~~~---------~E------~~A~~~A~gya----   61 (180)
T d1pvda2           6 GKYLFERLKQVNVNTVFGLPGDFNLSLLDKIY----E-VEGMRWAGNA---------NE------LNAAYAADGYA----   61 (180)
T ss_dssp             HHHHHHHHHHTTCCEEEECCCTTTHHHHHGGG----G-STTCEECCCS---------CH------HHHHHHHHHHH----
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH----H-HCCEEEEEEC---------CC------CHHHHHHHHHH----
T ss_conf             99999999987999999907802799999998----7-2663786542---------56------42467888776----


Q ss_pred             HHHHCCCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             775166616999976987428999987401
Q gi|254780227|r  207 ERSATPRSLIIHEVMGRNCGWLTAYSAHCY  236 (426)
Q Consensus       207 ~A~s~~~~~~iVEvMGR~aG~LAl~~ala~  236 (426)
                        +.+.+.+.++ +-|  .|.+-+.++++.
T Consensus        62 --r~t~~~~v~~-t~G--pG~~N~~~gl~~   86 (180)
T d1pvda2          62 --RIKGMSCIIT-TFG--VGELSALNGIAG   86 (180)
T ss_dssp             --HHHSCEEEEE-ETT--HHHHHHHHHHHH
T ss_pred             --HCCCCCEEEE-CCC--CCCCHHHHHHHH
T ss_conf             --4048752552-356--664205588999


No 52 
>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
Probab=27.04  E-value=14  Score=13.72  Aligned_cols=41  Identities=22%  Similarity=0.156  Sum_probs=28.5

Q ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             999999986399889994882578999999999985189962885
Q gi|254780227|r  128 EVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG  172 (426)
Q Consensus       128 ~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vig  172 (426)
                      +.+++.|++++|+.++.+-|+..+.-...|.    .+..+|++|.
T Consensus         7 ~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~----~~~~~i~~i~   47 (174)
T d2ez9a2           7 AAVIKVLEAWGVDHLYGIPGGSINSIMDALS----AERDRIHYIQ   47 (174)
T ss_dssp             HHHHHHHHHTTCCEEEECCCGGGHHHHHHHH----HTTTTSEEEE
T ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHHHHHHH----HCCCCCEEEE
T ss_conf             9999999987999999988775899999999----6079828999


No 53 
>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]}
Probab=26.80  E-value=15  Score=13.69  Aligned_cols=76  Identities=11%  Similarity=0.128  Sum_probs=42.1

Q ss_pred             HHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHC-CCC-CCC-CCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf             99999998569978999838366010799130462698888746407-874-003-367888653011101234567456
Q gi|254780227|r   50 MLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSY-GGS-PIG-NSRVKLTNFSDCIKRGLIKKDENP  126 (426)
Q Consensus        50 ~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~-GGt-~Lg-tsR~~~~~~~~~~~~~~~~~~~~~  126 (426)
                      ..++.+..+.  -.-+-+-+|-.|=       ....+...+..+.+. |-. +.+ |+|..               +...
T Consensus        23 ~~~~~L~~~~--p~~vsVT~~aggs-------~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~---------------n~~~   78 (275)
T d1b5ta_          23 NSIDRLSSLK--PKFVSVTYGANSG-------ERDRTHSIIKGIKDRTGLEAAPHLTCIDA---------------TPDE   78 (275)
T ss_dssp             HHHHHHHTTC--CSEEEECCCSSHH-------HHHHHHHHHHHHHHHHCCCEEEEECSTTC---------------CHHH
T ss_pred             HHHHHHHCCC--CCEEEECCCCCCC-------CHHHHHHHHHHHHHHCCCCCEEEECCCCC---------------CHHH
T ss_conf             9999985579--9979934699996-------63539999999975138871566520156---------------1767


Q ss_pred             HHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             99999999863998899948825
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDD  149 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdg  149 (426)
                      ++..+..+..+||+.+++++||-
T Consensus        79 l~~~l~~~~~~GI~niL~l~GD~  101 (275)
T d1b5ta_          79 LRTIARDYWNNGIRHIVALRGDL  101 (275)
T ss_dssp             HHHHHHHHHHTTCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHCEEEEECCCC
T ss_conf             99999889997317277745777


No 54 
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=26.20  E-value=15  Score=13.63  Aligned_cols=110  Identities=13%  Similarity=0.159  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             56999999998639988999488257899999999998518996288522223477222114633565999999999999
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNI  204 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA~~~~a~~i~~l  204 (426)
                      +..+.+.+.+...+.|.+|.=||+.++         .++ ..++|||-||-|            |||     +.+++   
T Consensus        38 ~av~~~~~~~~~~~~DviISRG~ta~~---------ir~-~~~iPVV~I~vs------------~~D-----il~al---   87 (186)
T d2pjua1          38 KAVTYIRKKLANERCDAIIAAGSNGAY---------LKS-RLSVPVILIKPS------------GYD-----VLQFL---   87 (186)
T ss_dssp             HHHHHHHHHTTTSCCSEEEEEHHHHHH---------HHT-TCSSCEEEECCC------------HHH-----HHHHH---
T ss_pred             HHHHHHHHHHHCCCCCEEEECCHHHHH---------HHH-HCCCCEEEECCC------------HHH-----HHHHH---
T ss_conf             899999999870899899979638999---------998-689987997088------------768-----99999---


Q ss_pred             HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             98775166616999976987428999987401433231011111110001457652328786559899999999985028
Q gi|254780227|r  205 SNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEKK  284 (426)
Q Consensus       205 ~~~A~s~~~~~~iVEvMGR~aG~LAl~~ala~ga~~~~i~~~~~~~~~~~~~~~d~iliPE~~~~~~~~~~~i~~~~~~~  284 (426)
                       ..|...++++.+|---.--.|. ...+.+- +                    .+   +....+.-++..+..-+..+..
T Consensus        88 -~~a~~~~~kiavV~~~~~~~~~-~~~~~ll-~--------------------~~---i~~~~~~~~~e~~~~v~~l~~~  141 (186)
T d2pjua1          88 -AKAGKLTSSIGVVTYQETIPAL-VAFQKTF-N--------------------LR---LDQRSYITEEDARGQINELKAN  141 (186)
T ss_dssp             -HHTTCTTSCEEEEEESSCCHHH-HHHHHHH-T--------------------CC---EEEEEESSHHHHHHHHHHHHHT
T ss_pred             -HHHHHHCCCEEEEECCCCCHHH-HHHHHHH-C--------------------CC---EEEEEECCHHHHHHHHHHHHHC
T ss_conf             -9999758978999177625699-9999995-9--------------------96---4899963889999999999987


Q ss_pred             CCEEEE
Q ss_conf             953899
Q gi|254780227|r  285 GSVAIF  290 (426)
Q Consensus       285 ~~~vIV  290 (426)
                      |+-+||
T Consensus       142 G~~vVV  147 (186)
T d2pjua1         142 GTEAVV  147 (186)
T ss_dssp             TCCEEE
T ss_pred             CCCEEE
T ss_conf             998999


No 55 
>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}
Probab=26.07  E-value=15  Score=13.61  Aligned_cols=40  Identities=10%  Similarity=0.035  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             9999999986399889994882578999999999985189962885
Q gi|254780227|r  127 LEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVG  172 (426)
Q Consensus       127 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vig  172 (426)
                      .+.+++.|++++|+.++.+-|...+.-...|.    +.  ++.+|.
T Consensus         7 ~~~i~~~L~~~GV~~vFg~pG~~~~~~~~al~----~~--~i~~i~   46 (188)
T d2ji7a2           7 FHVLIDALKMNDIDTMYGVVGIPITNLARMWQ----DD--GQRFYS   46 (188)
T ss_dssp             HHHHHHHHHHTTCCEEEECCCTTTHHHHHHHH----HT--TCEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH----HC--CCEEEE
T ss_conf             99999999987999999948887899999997----37--997998


No 56 
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}
Probab=24.55  E-value=16  Score=13.43  Aligned_cols=34  Identities=12%  Similarity=0.020  Sum_probs=22.8

Q ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             4876337999836877514899999999999985699789998
Q gi|254780227|r   25 KDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYY   67 (426)
Q Consensus        25 ~~~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~~~~~~v~G~   67 (426)
                      +-+|..|||||--    || |  ++++++.++..  |.++.-+
T Consensus         2 ~~~~~mkIgii~~----~G-n--~~s~~~al~~~--G~~~~~v   35 (202)
T d1q7ra_           2 YFQSNMKIGVLGL----QG-A--VREHVRAIEAC--GAEAVIV   35 (202)
T ss_dssp             CCCCCCEEEEESC----GG-G--CHHHHHHHHHT--TCEEEEE
T ss_pred             CCCCCCEEEEEEC----CC-C--HHHHHHHHHHC--CCCEEEE
T ss_conf             7546987999978----99-8--99999999987--9929998


No 57 
>d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId: 41114]}
Probab=24.43  E-value=16  Score=13.42  Aligned_cols=24  Identities=4%  Similarity=-0.065  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf             569999999986399889994882
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGGD  148 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGGd  148 (426)
                      ..++++.+.+++.+||++++....
T Consensus        26 ~R~~klr~~M~e~~iDallit~~~   49 (156)
T d1kp0a1          26 RRZBRLRAWMAKSBIDAVLFTSYH   49 (156)
T ss_dssp             HHHHHHHHHHHHHTCSEEEECSHH
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             999999999998799999986844


No 58 
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}
Probab=24.20  E-value=16  Score=13.39  Aligned_cols=28  Identities=29%  Similarity=0.392  Sum_probs=17.9

Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             9999999851899628852222347722
Q gi|254780227|r  155 CDLLRYLKEKNYNITVVGLPKTIDNDII  182 (426)
Q Consensus       155 ~~L~e~~~~~~~~i~vigiPKTIDNDi~  182 (426)
                      ..|.+..++.+...-|||.|+..|+...
T Consensus        41 ~~l~~ii~e~~i~~iVvGlP~~~dG~~~   68 (98)
T d1iv0a_          41 EALLDFVRREGLGKLVVGLPLRTDLKES   68 (98)
T ss_dssp             HHHHHHHHHHTCCEEEEECCCCCCSSSC
T ss_pred             HHHHHHHHHHCCCEEECCCCCCCCCCCC
T ss_conf             9999999863301057166322379837


No 59 
>d1nnsa_ c.88.1.1 (A:) Asparaginase type II {Escherichia coli [TaxId: 562]}
Probab=23.86  E-value=16  Score=13.35  Aligned_cols=68  Identities=13%  Similarity=0.066  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf             4569999999986--399889994882578999999999985189962885222234772221146335659
Q gi|254780227|r  124 ENPLEVSAHHLMQ--SGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTA  193 (426)
Q Consensus       124 ~~~~~~~~~~l~~--~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdTA  193 (426)
                      ++++..+.+.+++  .+.|++|++-|-|||.-.+......-  +.+.|||-.=.-.--|.+.+|-..=+-.|
T Consensus        63 ~~~~~~l~~~i~~~~~~~dG~Vv~HGTDTm~~tA~~L~~~~--~~~kpVV~TGa~~p~~~~~sD~~~Nl~~A  132 (326)
T d1nnsa_          63 DNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLDLTV--KCDKPVVMVGAMRPSTSMSADGPFNLYNA  132 (326)
T ss_dssp             HHHHHHHHHHHHHHGGGCSEEEEECCSSSHHHHHHHHHHHC--CCCSCEEEECCSSCTTSTTCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHH--CCCCCEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf             99999999999986434784799558685999999999975--42886799502340578773137889999


No 60 
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]}
Probab=23.77  E-value=17  Score=13.34  Aligned_cols=53  Identities=15%  Similarity=0.186  Sum_probs=28.2

Q ss_pred             HHHHHHHHHCCCCEEEEE-------CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             999999986399889994-------882578999999999985189962885222234772
Q gi|254780227|r  128 EVSAHHLMQSGVTILHTI-------GGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI  181 (426)
Q Consensus       128 ~~~~~~l~~~~Id~Li~I-------GGdgS~~~a~~L~e~~~~~~~~i~vigiPKTIDNDi  181 (426)
                      +..++..-..|-|.-+.|       .|-+++.+|..|+++.++.++++-+.| =.|+|.|-
T Consensus        69 ~~~lr~alAmGaD~avli~~~~~~~~~~d~~ata~~la~~~~~~~~DLIl~G-~~s~D~~t  128 (246)
T d1efpb_          69 AETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAG-KQAIDNDM  128 (246)
T ss_dssp             HHHHHHHHHHTCSEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEE-SCCTTTCC
T ss_pred             HHHHHHHHHHCCCHHEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-EEECCCCC
T ss_conf             8999988860577004886035534465899999999998750089899997-33023466


No 61 
>d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]}
Probab=23.70  E-value=17  Score=13.33  Aligned_cols=82  Identities=17%  Similarity=0.255  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEECCCCCHHHHHHHHHCCCCCC-C-CCCCCCCCCCHHHHCCCC
Q ss_conf             48999999999999856997899983836601079913046269888874640787400-3-367888653011101234
Q gi|254780227|r   43 CLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPI-G-NSRVKLTNFSDCIKRGLI  120 (426)
Q Consensus        43 G~N~~I~~iv~~a~~~~~~~~v~G~~~G~~GL~~~~~~~l~~l~~~~v~~~~~~GGt~L-g-tsR~~~~~~~~~~~~~~~  120 (426)
                      ++.+ ++..++.+..+.+  .-+-+-+|-.|-...       .+......+.+.|-..+ + |+|..             
T Consensus        27 ~~~~-l~~~~~~L~~~~p--~fisVT~~~~g~~~~-------~tl~~a~~l~~~G~~~i~Hlt~r~~-------------   83 (292)
T d1v93a_          27 GEEA-LFRTLEELKAFRP--AFVSITYGAMGSTRE-------RSVAWAQRIQSLGLNPLAHLTVAGQ-------------   83 (292)
T ss_dssp             HHHH-HHHHHHHHHTTCC--SEEEECCCGGGTTHH-------HHHHHHHHHHHTTCCEEEEECCTTS-------------
T ss_pred             HHHH-HHHHHHHHHCCCC--CEEEECCCCCCCCCH-------HHHHHHHHHHHCCCCCEEEEEECCC-------------
T ss_conf             8999-9999999734799--989945899984505-------0999999998679871333463176-------------


Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECCHH
Q ss_conf             56745699999999863998899948825
Q gi|254780227|r  121 KKDENPLEVSAHHLMQSGVTILHTIGGDD  149 (426)
Q Consensus       121 ~~~~~~~~~~~~~l~~~~Id~Li~IGGdg  149 (426)
                        +...++..+..+..+||+.+++++||.
T Consensus        84 --n~~~l~~~l~~~~~~GI~niLal~GD~  110 (292)
T d1v93a_          84 --SRKEVAEVLHRFVESGVENLLALRGDP  110 (292)
T ss_dssp             --CHHHHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             --HHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf             --088899999999980968674326898


No 62 
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}
Probab=22.92  E-value=17  Score=13.23  Aligned_cols=26  Identities=12%  Similarity=0.018  Sum_probs=14.8

Q ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf             99999998639988999488257899
Q gi|254780227|r  128 EVSAHHLMQSGVTILHTIGGDDTNTT  153 (426)
Q Consensus       128 ~~~~~~l~~~~Id~Li~IGGdgS~~~  153 (426)
                      +.+++.|+++||+.++.+-|+..+.-
T Consensus         8 ~~i~~~L~~~GV~~vFgipG~~~~~l   33 (184)
T d2djia2           8 LAVMKILESWGADTIYGIPSGTLSSL   33 (184)
T ss_dssp             HHHHHHHHHTTCCEEEECCCTTTHHH
T ss_pred             HHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf             99999999879989999787607999


No 63 
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Probab=22.36  E-value=18  Score=13.16  Aligned_cols=115  Identities=11%  Similarity=-0.008  Sum_probs=55.5

Q ss_pred             EEEEEEECCCCCHHHH-HHHHHHHHHHHHHCCCCEEEEEC--CHHH-CCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             3799983687751489-99999999999856997899983--8366-010799130462698888746407874003367
Q gi|254780227|r   30 HKVAFLTAGGIAPCLS-SIIGMLINHYNKILPKAELIYYR--FGYQ-GLLLDDKITITEDMRQNAEQLLSYGGSPIGNSR  105 (426)
Q Consensus        30 krI~IltsGG~aPG~N-~~I~~iv~~a~~~~~~~~v~G~~--~G~~-GL~~~~~~~l~~l~~~~v~~~~~~GGt~LgtsR  105 (426)
                      |||.|.|+ |.  |+| ..-.++.+.+..  +|++|..+-  +|.+ -+++....++..+                ..+.
T Consensus         1 kkili~~~-Gt--GGHv~~a~al~~~L~~--~G~eV~~i~~~~~~~~~~~~~~~~~~~~~----------------~~~~   59 (351)
T d1f0ka_           1 KRLMVMAG-GT--GGHVFPGLAVAHHLMA--QGWQVRWLGTADRMEADLVPKHGIEIDFI----------------RISG   59 (351)
T ss_dssp             CEEEEECC-SS--HHHHHHHHHHHHHHHT--TTCEEEEEECTTSTHHHHGGGGTCEEEEC----------------CCCC
T ss_pred             CEEEEECC-CC--HHHHHHHHHHHHHHHH--CCCEEEEEEECCCCHHHCCCCCCCCEEEE----------------ECCC
T ss_conf             97999838-85--8989999999999985--89989999958832432235049957999----------------7888


Q ss_pred             CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             88865301110123456745699999999863998899948825789999999999851899628852
Q gi|254780227|r  106 VKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGL  173 (426)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~e~~~~~~~~i~vigi  173 (426)
                      ...........  ........+......+++.+-+.++..+++-+......-      ...++|++.+
T Consensus        60 ~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a------~~~~ip~~~~  119 (351)
T d1f0ka_          60 LRGKGIKALIA--APLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAA------WSLGIPVVLH  119 (351)
T ss_dssp             CTTCCHHHHHT--CHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHH------HHTTCCEEEE
T ss_pred             CCCCCHHHHHH--HHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH------HHCCCCEEEC
T ss_conf             67777799999--998877767777887631344300110322113445455------4056434632


No 64 
>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}
Probab=21.61  E-value=18  Score=13.06  Aligned_cols=39  Identities=15%  Similarity=0.074  Sum_probs=22.7

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH-CCCCEEEEE
Q ss_conf             76337999836877514899999999999985-699789998
Q gi|254780227|r   27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKI-LPKAELIYY   67 (426)
Q Consensus        27 ~~~krI~IltsGG~aPG~N~~I~~iv~~a~~~-~~~~~v~G~   67 (426)
                      |+ |||+||. ||+++==.-.+.+.-.-++.+ ..+++++-+
T Consensus         1 M~-~kI~vl~-GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i   40 (96)
T d1iowa1           1 MT-DKIAVLL-GGTSAEREVSLNSGAAVLAGLREGGIDAYPV   40 (96)
T ss_dssp             CC-CEEEEEC-CCSSTTHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CC-CEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf             98-4599995-7576224768866999999998759257640


No 65 
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]}
Probab=21.31  E-value=18  Score=13.02  Aligned_cols=23  Identities=13%  Similarity=-0.026  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             56999999998639988999488
Q gi|254780227|r  125 NPLEVSAHHLMQSGVTILHTIGG  147 (426)
Q Consensus       125 ~~~~~~~~~l~~~~Id~Li~IGG  147 (426)
                      ..++++.+.+++++||+|++...
T Consensus        25 ~Rl~klr~~m~~~giDalli~~~   47 (155)
T d1chma1          25 NRQARLRAHLAAENIDAAIFTSY   47 (155)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECSH
T ss_pred             HHHHHHHHHHHHCCCCEEEEECC
T ss_conf             99999999999869999999441


No 66 
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]}
Probab=20.63  E-value=19  Score=12.93  Aligned_cols=24  Identities=0%  Similarity=-0.040  Sum_probs=11.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             75148999999999999856997899
Q gi|254780227|r   40 IAPCLSSIIGMLINHYNKILPKAELI   65 (426)
Q Consensus        40 ~aPG~N~~I~~iv~~a~~~~~~~~v~   65 (426)
                      |+.|=-+....+.+.+...  |++|.
T Consensus        10 P~~gH~~p~l~la~~L~~r--GH~Vt   33 (450)
T d2c1xa1          10 PFSTHAAPLLAVVRRLAAA--APHAV   33 (450)
T ss_dssp             CSSSSHHHHHHHHHHHHHH--CTTSE
T ss_pred             HHHHHHHHHHHHHHHHHHC--CCCEE
T ss_conf             6575899999999999977--99689


No 67 
>d1lbaa_ d.118.1.1 (A:) Bacteriophage T7 lysozyme (Zn amidase) {Bacteriophage T7 [TaxId: 10760]}
Probab=20.10  E-value=20  Score=12.86  Aligned_cols=35  Identities=14%  Similarity=0.033  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf             99999999998518996288522223477222114633565
Q gi|254780227|r  152 TTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALT  192 (426)
Q Consensus       152 ~~a~~L~e~~~~~~~~i~vigiPKTIDNDi~~td~tiGfdT  192 (426)
                      ..+..|..++..+...-.|+|-     +|+..+. ||||+-
T Consensus        97 ~al~~L~~~l~~~~p~~~I~gH-----~d~~~k~-CPGf~~  131 (146)
T d1lbaa_          97 QSLRSLLVTLLAKYEGAVLRAH-----HEVAPKA-CPSFDL  131 (146)
T ss_dssp             HHHHHHHHHHHHHSTTCEEEEG-----GGTSSSC-TTSBCH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEC-----CCCCCCC-CCCCCH
T ss_conf             9999999999976899899805-----6889988-969589


Done!