RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780227|ref|YP_003064640.1|
pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus
Liberibacter asiaticus str. psy62]
(426 letters)
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural
genomics, PSI-2, protein structure initiative; 2.00A
{Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
(A:1-148,A:302-364)
Length = 211
Score = 115 bits (290), Expect = 9e-27
Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 10/160 (6%)
Query: 27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIY-YRFGYQGLLLDDKITITED 85
M A + +GG+ +++ +I K K IY R G G L +D I ++
Sbjct: 1 MAAKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQE 60
Query: 86 MRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTI 145
L G+ R KL + ++++ E +
Sbjct: 61 SDAAISALRYTPSGAFGSCRYKLKS---------LEQNRREYERLIEVFKAHDIGYFFYN 111
Query: 146 GGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH 185
GG D+ T + + Y I + +PKT+DND+ H
Sbjct: 112 GGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPARH 151
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma
brucei} PDB: 3f5m_A* (A:28-234,A:388-429)
Length = 249
Score = 106 bits (266), Expect = 6e-24
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 17/159 (10%)
Query: 23 LEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITI 82
+ + + +T GGI P L+ +I + + +I +RFGY GL T
Sbjct: 64 IHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTA 123
Query: 83 TEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTIL 142
E R + YGG+ +G+SR + L + GV IL
Sbjct: 124 IELHRGRVTNIHHYGGTILGSSR-----------------GPQDPKEMVDTLERLGVNIL 166
Query: 143 HTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181
T+GGD T A + + K + +I+V G+PKTIDND+
Sbjct: 167 FTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDL 205
>2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase;
HET: FBP; 2.11A {Borrelia burgdorferi B31}
(A:1-211,A:433-504)
Length = 283
Score = 102 bits (255), Expect = 1e-22
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 29 AHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQ 88
A + + +GG AP ++I + + K P ++L ++ G GLL +DKI +TE +
Sbjct: 72 ALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLIN 131
Query: 89 NAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGD 148
+ + GG I +S + E + ++ + + IGGD
Sbjct: 132 S---YRNTGGFDIVSSGRTKI------------ETEEHYNKALFVAKENNLNAIIIIGGD 176
Query: 149 DTNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181
D+NT A L Y K+ NI V+G+PKTID D+
Sbjct: 177 DSNTNAAILAEYFKKNGENIQVIGVPKTIDADL 209
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET:
FBP ADP; 2.40A {Escherichia coli} (A:1-132,A:254-306)
Length = 185
Score = 89.5 bits (222), Expect = 7e-19
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 23/152 (15%)
Query: 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQN 89
K+ LT+GG AP +++ I ++ + + E++ GY GL D + + R +
Sbjct: 3 KKIGVLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLD---RYS 57
Query: 90 AEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDD 149
+++ GG+ +G++R +DEN V+ +L + G+ L IGGD
Sbjct: 58 VSDMINRGGTFLGSARFPE------------FRDENIRAVAIENLKKRGIDALVVIGGDG 105
Query: 150 TNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181
+ A L +GLP TIDNDI
Sbjct: 106 SYMGAMRL------TEMGFPCIGLPGTIDNDI 131
>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A
{Bacillus stearothermophilus} (A:1-131,A:251-305)
Length = 186
Score = 89.5 bits (222), Expect = 8e-19
Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 23/152 (15%)
Query: 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQN 89
++ LT+GG +P +++ I ++ I E+ GY GL+ + + +
Sbjct: 2 KRIGVLTSGGDSPGMNAAIRSVVRK--AIYHGVEVYGVYHGYAGLIAGNIKKLE---VGD 56
Query: 90 AEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDD 149
++ GG+ + +R K E + L + G+ L IGGD
Sbjct: 57 VGDIIHRGGTILYTARCPE------------FKTEEGQKKGIEQLKKHGIQGLVVIGGDG 104
Query: 150 TNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181
+ A L + VG+P TIDNDI
Sbjct: 105 SYQGAKKL------TEHGFPCVGVPGTIDNDI 130
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus
bulgaricus, transferase; 1.85A {Lactobacillus
delbrueckii subsp} (A:1-131,A:253-303)
Length = 182
Score = 89.1 bits (221), Expect = 1e-18
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 23/152 (15%)
Query: 30 HKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQN 89
++ LT+GG AP +++ + + I E+ R+G+ GL+ D + ++
Sbjct: 2 KRIGILTSGGDAPGMNAAVRAVT--RVAIANGLEVFGIRYGFAGLVAGDIFPLE---SED 56
Query: 90 AEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDD 149
L++ G+ + ++R +E L + G+ + IGGD
Sbjct: 57 VAHLINVSGTFLYSARYPE------------FAEEEGQLAGIEQLKKHGIDAVVVIGGDG 104
Query: 150 TNTTACDLLRYLKEKNYNITVVGLPKTIDNDI 181
+ A L + +GLP TIDNDI
Sbjct: 105 SYHGALQL------TRHGFNSIGLPGTIDNDI 130
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma
brucei} PDB: 3f5m_A* (A:235-387,A:441-487)
Length = 200
Score = 88.6 bits (219), Expect = 1e-18
Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 35/180 (19%)
Query: 186 QSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNY 245
++ G TA + + E + + + ++MGR+ G++ A +A
Sbjct: 3 RTFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVA---------- 52
Query: 246 IDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRL 305
+ +PE + + + L + S I V+EG +D
Sbjct: 53 ---------SAQANICLVPENPISEQEVMSLLERRFCHSRSCVIIVAEGFGQDWGR---- 99
Query: 306 SSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIV----QKSG---YFARSAPSG 358
D+ G+ L ++G +K +KA +S K Y R+ P G
Sbjct: 100 ---GSGGYDASGNKKLI--DIGVILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPG 154
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural
genomics, PSI-2, protein structure initiative; 2.00A
{Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
(A:149-301)
Length = 153
Score = 76.2 bits (187), Expect = 8e-15
Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 27/172 (15%)
Query: 187 SLGALTAAQVSACFFDNISNERSAT---PRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDR 243
G + A+ A S + ++ + + EVMGR+ GW+ A
Sbjct: 5 CPGFGSVAKYIAVSTLEASFDVASMSATSTKVFVLEVMGRHAGWIAAAG----------- 53
Query: 244 NYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDN 303
G SP+ + + PE+SF+ + + ++ ++K G ++ VSEG D+
Sbjct: 54 ----GLASSPEREIPVVILFPEISFDKQKFLAKVDSCVKKFGYCSVVVSEGV----KGDD 105
Query: 304 RLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAE-RSIVQKSGYFARS 354
++ RD+FGH L V A + + V + Y R+
Sbjct: 106 GKFLSDQGVRDAFGHAQLG--GVAPVVASMVKEGLGLKYHWGV--ADYLQRA 153
>2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase;
HET: FBP; 2.11A {Borrelia burgdorferi B31}
(A:212-315,A:388-432,A:505-555)
Length = 200
Score = 75.3 bits (185), Expect = 1e-14
Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 29/122 (23%)
Query: 184 IHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDR 243
I S G +A ++ + N+ + +T + ++MGR+ + A
Sbjct: 3 IEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSASHVALECALK-------- 54
Query: 244 NYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVM---------EKKGSVAIFVSEG 294
+ + E + + + M + V EG
Sbjct: 55 ------------THPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEG 102
Query: 295 AC 296
Sbjct: 103 LI 104
>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A
{Bacillus stearothermophilus} (A:132-250,A:306-319)
Length = 133
Score = 74.9 bits (184), Expect = 2e-14
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 24/141 (17%)
Query: 187 SLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYI 246
++G TA D I + ++ R+ +I EVMGR+ G + +S
Sbjct: 5 TIGFDTALNTVIDAIDKIRDTATSHERTYVI-EVMGRHAGDIALWSGLA----------- 52
Query: 247 DGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRL 305
G + + +PE +++ I RL + E+ K I V+EG V ++
Sbjct: 53 ---------GGAETILIPEADYDMNDVIARLKRGHERGKKHSIIIVAEGVGSGVDFGRQI 103
Query: 306 S--SGEKIKRDSFGHILLDKM 324
+G + + GH++ +M
Sbjct: 104 QEATGFETRVTVLGHVIDQRM 124
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET:
FBP ADP; 2.40A {Escherichia coli} (A:133-253,A:307-320)
Length = 135
Score = 74.1 bits (182), Expect = 3e-14
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 24/136 (17%)
Query: 187 SLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYI 246
++G TA D + + S+ R ++ EVMGR CG LT +A
Sbjct: 5 TIGFFTALSTVVEAIDRLRDTSSSHQRISVV-EVMGRYCGDLTLAAAIA----------- 52
Query: 247 DGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMDNRL 305
G + V +PE+ F+ E + + + K K + ++E C + + +
Sbjct: 53 ---------GGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEHMCDVDELAHFI 103
Query: 306 S--SGEKIKRDSFGHI 319
+G + + GHI
Sbjct: 104 EKETGRETRATVLGHI 119
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus
bulgaricus, transferase; 1.85A {Lactobacillus
delbrueckii subsp} (A:132-252)
Length = 121
Score = 68.8 bits (168), Expect = 1e-12
Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 24/139 (17%)
Query: 184 IHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDR 243
++G TA + D I + S+ R I+ VMGRNCG +
Sbjct: 2 TDATIGYDTACMTAMDAIDKIRDTASSHHRVFIV-NVMGRNCGDIAMRVGVA-------- 52
Query: 244 NYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK-KGSVAIFVSEGACRDVIMD 302
G D + +PE +++E RL + E K + V+EG
Sbjct: 53 ------------CGADAIVIPERPYDVEEIANRLKQAQESGKDHGLVVVAEGVMTADQFM 100
Query: 303 NRLS--SGEKIKRDSFGHI 319
L ++ + GH+
Sbjct: 101 AELKKYGDFDVRANVLGHM 119
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
class II, ligase; 3.23A {Methanococcus maripaludis S2}
(A:550-614)
Length = 65
Score = 32.0 bits (72), Expect = 0.15
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 269 NLEVEIE 275
N+EV+IE
Sbjct: 1 NVEVKIE 7
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
class II, ligase; 3.23A {Methanococcus maripaludis S2}
(B:550-611)
Length = 62
Score = 31.6 bits (71), Expect = 0.20
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 269 NLEVEIE 275
N+EV+IE
Sbjct: 1 NVEVKIE 7
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 30.5 bits (69), Expect = 0.40
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 18/37 (48%)
Query: 57 KILP---KAELIYYRFGYQGLLLDDKITITEDMRQNA 90
++ E+++YR G+ M Q A
Sbjct: 4 DVMSIESLVEVVFYR----GMT----------M-QVA 25
>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl
coenzyme A, isocitrate lyase, persistence, GLCB,
structural genomics, PSI; 2.10A {Mycobacterium
tuberculosis} (A:580-741)
Length = 162
Score = 29.1 bits (65), Expect = 0.96
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 81 TITEDMRQNAEQLLSYGGSPI--GNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQ 136
I E++ N + +L Y + G K+ + D L+ +D L +S+ L
Sbjct: 14 EIREEVDNNCQSILGYVVRWVDQGVGCSKVPDIHDV---ALM-EDRATLRISSQLLAN 67
>3hl3_A Glucose-1-phosphate thymidylyltransferase; IDP01254,
sucrose, structural genomics, center for structural
genomics of infectious diseases; HET: SUC; 2.76A
{Bacillus anthracis} (A:)
Length = 269
Score = 29.1 bits (63), Expect = 1.2
Identities = 18/127 (14%), Positives = 34/127 (26%)
Query: 173 LPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYS 232
++ ++ I + F N +S+ E G
Sbjct: 118 EDFVGNDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQNRKII 177
Query: 233 AHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVS 292
+Y I+ D K + + S E+EI ++ K+G +
Sbjct: 178 EIEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEITDINNWYLKRGVLTYNEM 237
Query: 293 EGACRDV 299
G D
Sbjct: 238 SGWWTDA 244
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens}
(A:147-257)
Length = 111
Score = 27.8 bits (61), Expect = 2.7
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 87 RQNAEQLLSYGGSPIGNSRVKLTNFSDCIKR-GLIKKDENPLEVSAHHLMQSGVTILHTI 145
R+ +E+LL +P G V+ + + + D H+ ++ + I
Sbjct: 11 RRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYI 70
Query: 146 GGDDTNTTACDLLRYLKEKNYNITVV 171
+ L+ Y + +
Sbjct: 71 TSRTQFNSLQQLVAYYSKHADGLCHR 96
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine
kinase, phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} (A:64-174)
Length = 111
Score = 27.8 bits (61), Expect = 2.7
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 87 RQNAEQLLSYGGSPIGNSRVKLTNFSDCIKR-GLIKKDENPLEVSAHHLMQSGVTILHTI 145
R+ +E+LL +P G V+ + + + D H+ ++ + I
Sbjct: 11 RRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYI 70
Query: 146 GGDDTNTTACDLLRYLKEKNYNITVV 171
+ L+ Y + +
Sbjct: 71 TSRTQFNSLQQLVAYYSKHADGLCHR 96
>1gef_A Holliday junction resolvase; HJC, hydrolase; 2.00A
{Pyrococcus furiosus} (A:)
Length = 123
Score = 27.1 bits (60), Expect = 3.9
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 340 AERSIVQK---SGYFA-RSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNILR 395
AER +++ G+ RSA S DL L ++ ++ + ++ R
Sbjct: 8 AERELIKLLEKHGFAVVRSAGSKKVDLVAGNGKKYLCIEVKVTKKDHLYVGKR---DMGR 64
Query: 396 IIKFEDIRGGRVF 408
+I+F GG
Sbjct: 65 LIEFSRRFGGIPV 77
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP;
1.8A {Lactobacillus sanfranciscensis}
(A:1-113,A:263-319)
Length = 170
Score = 27.0 bits (59), Expect = 5.5
Identities = 16/142 (11%), Positives = 42/142 (29%), Gaps = 19/142 (13%)
Query: 11 LDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELI---YY 67
+ +++ + + + + L+ G + + ++ K + +LI
Sbjct: 44 IALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV-TNVDPETKTIKVKDLITNEEK 102
Query: 68 RFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPL 127
Y L++ I E M + + + G D + N
Sbjct: 103 TEAYDKLIMTTAIITDEYMHSSNRDIFAAG---------------DSAAVHYNPTNSNAY 147
Query: 128 EVSAHHLMQSGVTILHTIGGDD 149
A + ++ G + + D
Sbjct: 148 IPLATNAVRQGRLVGLNLTEDK 169
>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A
{Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A*
(A:1-106,A:189-283)
Length = 201
Score = 26.3 bits (57), Expect = 7.9
Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 14/105 (13%)
Query: 87 RQNAEQLLSYGGSPIGNSRVKLTNFSDC---IKRGLIKKDENPLEVSAHHLMQSGVTILH 143
+ ++ G+ G V T ++ + + L + AH L + IL
Sbjct: 68 AEMRHRIGQLMGTSQGGMWVG-TFHGLAHRLLRAHHMDANFAELLLRAHELWLNKPHILQ 126
Query: 144 TIGGD----------DTNTTACDLLRYLKEKNYNITVVGLPKTID 178
DTN +R L + +VG
Sbjct: 127 HYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSI 171
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid
decarboxylase, X-RAY diffraction, structural genomics,
NPPSFA; 2.15A {Aquifex aeolicus} (A:)
Length = 189
Score = 26.2 bits (57), Expect = 8.7
Identities = 6/62 (9%), Positives = 17/62 (27%)
Query: 154 ACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPR 213
LL+ L+E ++++ +V + + + +
Sbjct: 17 GIKLLQVLEELDFSVDLVISRNAKVVLKEEHSLTFEEVLKGLKNVRIHEENDFTSPLASG 76
Query: 214 SL 215
S
Sbjct: 77 SR 78
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.321 0.138 0.402
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,191,160
Number of extensions: 142669
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 26
Length of query: 426
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 335
Effective length of database: 1,879,794
Effective search space: 629730990
Effective search space used: 629730990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)