RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780227|ref|YP_003064640.1|
pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus
Liberibacter asiaticus str. psy62]
         (426 letters)



>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
           fructose-6-phosphate bindi magnesium binding, citrate
           binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
          Length = 989

 Score =  185 bits (472), Expect = 1e-47
 Identities = 78/377 (20%), Positives = 144/377 (38%), Gaps = 82/377 (21%)

Query: 31  KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
           K+A +T+GG AP +++ +  +      I    ++     GY GL+    + + E   Q+ 
Sbjct: 212 KIAIITSGGDAPGMNAAVRAVT--RAGIFYGCKVYACYEGYTGLVKGGDM-LKELQWQDV 268

Query: 91  EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
             LLS GG+ IG +R K              ++      + ++++ +G+  L   GGD +
Sbjct: 269 RGLLSIGGTIIGTARCKEF------------RERWGRLQACYNMVSNGIDALVVCGGDGS 316

Query: 151 NTTACDL-----------------LRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTA 193
            T A                     +   E + N+T+VGL  +IDND+     ++GA ++
Sbjct: 317 LTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSS 376

Query: 194 AQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSP 253
            +      D I    ++  R+ ++ EVMGR+CGWL   S       I             
Sbjct: 377 LERIIELVDYIDATAASHSRAFVV-EVMGRHCGWLGLMSG------IA------------ 417

Query: 254 DFKGIDGVYLPEMSFNLEVEIERLSKVMEK-----KGSVAIFVSEGACRDVIMDNRLSSG 308
              G D +++PE   +     + L KV  +     +    + V+EGA     +D++L+  
Sbjct: 418 --TGADYIFIPERPPSESNWKDDLKKVCLRHREKGRRKTTVIVAEGA-----IDDQLN-- 468

Query: 309 EKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKM 368
                            + S         I  + + + + G+  R     + D  L    
Sbjct: 469 ----------------PITSEEVKDVLVEIGLD-TRITRLGHVQRGGAPCAFDRFLATVQ 511

Query: 369 VVLAVDSAISGISGVTG 385
            V AV + +     +  
Sbjct: 512 GVDAVRAVLESTPAIPS 528



 Score =  132 bits (332), Expect = 2e-31
 Identities = 51/279 (18%), Positives = 89/279 (31%), Gaps = 56/279 (20%)

Query: 30  HKVAFLTAGGIAP----CLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITED 85
             +A +  G                 +   +++         R G+ GL+    +     
Sbjct: 599 LNIAIIHVGAPTSALNPATRVATLNSLAKGHRV------FAIRNGFAGLIRHGAVRELN- 651

Query: 86  MRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTI 145
              + E   + GGS IG +R                   + +   A++  Q     L  I
Sbjct: 652 -WIDVEDWHNTGGSEIGTNR---------------SLPSDDMGTVAYYFQQYKFDGLIII 695

Query: 146 GGDDTNTTACDLLRYL-KEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNI 204
           GG +  T   +L     +   +NI +  LP T+ N++     SLG+ T     + + D +
Sbjct: 696 GGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAV 755

Query: 205 SNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLP 264
               SA+ R   + EV G   G+L +Y+                        G   VY P
Sbjct: 756 KQSASASRRRTFVVEVQGGYSGYLASYAGLI--------------------TGALAVYTP 795

Query: 265 EMSFNLEVEIERLSKVMEK--------KGSVAIFVSEGA 295
           E   NL+   E +  +           +       +E A
Sbjct: 796 ENPINLQTVQEDIELLTRTYEEDDGKNRSGKIFIHNEKA 834


>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
           fructose-6-phosphate bindi magnesium binding, citrate
           binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
          Length = 941

 Score =  183 bits (467), Expect = 4e-47
 Identities = 65/377 (17%), Positives = 132/377 (35%), Gaps = 80/377 (21%)

Query: 31  KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
            +  +T+GG +P ++  +  ++     I    ++     GY+GL+   +  I E    + 
Sbjct: 183 TIGVMTSGGDSPGMNPFVRAVVRA--GIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDV 240

Query: 91  EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
              L  GG+ IG +R K              ++ +    +  +++  G+  L   GGD +
Sbjct: 241 RGWLVEGGTNIGTARCKEF------------RERSGRLKACKNMIDMGIDALIVCGGDGS 288

Query: 151 NTTACDL-----------------LRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTA 193
            T A                     +     + N+ + G   +IDND+     ++GA ++
Sbjct: 289 LTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSS 348

Query: 194 AQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSP 253
                   D I    ++  R+ I+ EVMGR+CGWL   +                     
Sbjct: 349 LDRICRAIDYIDATANSHSRAFIV-EVMGRHCGWLGLLAGLA------------------ 389

Query: 254 DFKGIDGVYLPEMSFNLEVEIERLSKVMEK-----KGSVAIFVSEGACRDVIMDNRLSSG 308
                D + +PE   +     +++  ++ K     K    + V+EGA  +          
Sbjct: 390 --TSADYILIPEKPASSREWQDQMCDIVGKHRARGKRKTIVIVAEGAISN--------DL 439

Query: 309 EKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKM 368
             I  D    +L++++ +                + V   G+  R   + + D       
Sbjct: 440 SPISCDQVKDVLVNRLGL---------------DTRVTTLGHVQRGGTAVAFDRIYATLQ 484

Query: 369 VVLAVDSAISGISGVTG 385
            V AV++ +   +    
Sbjct: 485 GVEAVNAVLECDADTPS 501



 Score =  131 bits (332), Expect = 2e-31
 Identities = 56/306 (18%), Positives = 100/306 (32%), Gaps = 55/306 (17%)

Query: 3   EFLSYISNLDMWILTGVLSFLEKDMVAHKVAFLTAGGIAP----CLSSIIGMLINHYNKI 58
           EF+ ++ N         +          K+A +  G  A      + S+    ++  +  
Sbjct: 545 EFVEHMKNFISTNSADHVPPSLPLEKRKKIAIINVGAPAGGMNSAVYSMATYCMSRGHVP 604

Query: 59  LPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRG 118
                      G+ GL   + +        + E   S GGS IG +R             
Sbjct: 605 ------YAIHNGFSGLARHESVRSIN--WLDIEGWGSLGGSEIGTNRTLPN--------- 647

Query: 119 LIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYL-KEKNYNITVVGLPKTI 177
                +  + + A+   + G   L  +GG +   +   L R      +  I +V +P TI
Sbjct: 648 -----DADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATI 702

Query: 178 DNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYL 237
            N++     SLG+ T       + D I    +AT   + + EV G N G++  ++     
Sbjct: 703 SNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQ---- 758

Query: 238 NMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK--------KGSVAI 289
             +                G    Y+PE   +L      ++ + E         K    I
Sbjct: 759 --LAC--------------GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLI 802

Query: 290 FVSEGA 295
             SE A
Sbjct: 803 LKSENA 808


>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
           PSI-2, protein structure initiative; 2.00A {Nitrosospira
           multiformis atcc 25196} PDB: 3k2q_A
          Length = 419

 Score =  181 bits (459), Expect = 4e-46
 Identities = 78/362 (21%), Positives = 135/362 (37%), Gaps = 35/362 (9%)

Query: 27  MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIY-YRFGYQGLLLDDKITITED 85
           M A    +  +GG+   +++    +I    K   K   IY  R G  G L +D I   ++
Sbjct: 1   MAAKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQE 60

Query: 86  MRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTI 145
                  L        G+ R KL +     +     + E  +EV   H     +      
Sbjct: 61  SDAAISALRYTPSGAFGSCRYKLKSLEQNRR-----EYERLIEVFKAH----DIGYFFYN 111

Query: 146 GGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS 205
           GG D+  T   + +      Y I  + +PKT+DND+       G  + A+  A      S
Sbjct: 112 GGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVSTLEAS 171

Query: 206 NERSATPRS---LIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVY 262
            + ++   +   + + EVMGR+ GW+ A                     SP+ +    + 
Sbjct: 172 FDVASMSATSTKVFVLEVMGRHAGWIAAAGGLAS---------------SPEREIPVVIL 216

Query: 263 LPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLD 322
            PE+SF+ +  + ++   ++K G  ++ VSEG       D+     ++  RD+FGH  L 
Sbjct: 217 FPEISFDKQKFLAKVDSCVKKFGYCSVVVSEGV----KGDDGKFLSDQGVRDAFGHAQLG 272

Query: 323 KMNVGSWFADKFANMIKAE-RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGIS 381
              V    A      +  +    V      A    +   D+     M   AV+ A+ G +
Sbjct: 273 --GVAPVVASMVKEGLGLKYHWGVADYLQRAARHIASKTDVEQAYAMGQAAVEFAVQGHN 330

Query: 382 GV 383
            V
Sbjct: 331 SV 332


>2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase; HET: FBP;
           2.11A {Borrelia burgdorferi B31} SCOP: c.89.1.1 PDB:
           1kzh_A*
          Length = 555

 Score =  169 bits (430), Expect = 9e-43
 Identities = 77/416 (18%), Positives = 151/416 (36%), Gaps = 71/416 (17%)

Query: 31  KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
            +  + +GG AP   ++I  + +   K  P ++L  ++ G  GLL +DKI +TE +  + 
Sbjct: 74  NIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINS- 132

Query: 91  EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
               + GG  I +S            R  I+ +E+  +       ++ +  +  IGGDD+
Sbjct: 133 --YRNTGGFDIVSSG-----------RTKIETEEHYNKALFVA-KENNLNAIIIIGGDDS 178

Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH--QSLGALTAAQVSACFFDNISNER 208
           NT A  L  Y K+   NI V+G+PKTID D+   H   S G  +A ++ +    N+  + 
Sbjct: 179 NTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDA 238

Query: 209 SATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDF------------- 255
            +T +     ++MGR+   +    A   L    +   +   + +                
Sbjct: 239 MSTKKYWHFVKLMGRSASHVALECA---LKTHPNICIVSEEVLAKKKTLSEIIDEMVSVI 295

Query: 256 -------KGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSG 308
                       V +PE       E++ L   +           +G   + + +  ++  
Sbjct: 296 LKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKL 355

Query: 309 EK---------------------IKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQK 347
                                  ++RD  G+  + ++     F +   + +   +   + 
Sbjct: 356 SDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEY 415

Query: 348 S----------GYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNI 393
                      GY  RSA   + D      +   AV   ++G++G     +  N  
Sbjct: 416 KGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLK 471


>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
           PDB: 3f5m_A*
          Length = 487

 Score =  169 bits (430), Expect = 9e-43
 Identities = 84/360 (23%), Positives = 141/360 (39%), Gaps = 52/360 (14%)

Query: 31  KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
            +  +T GGI P L+ +I  +      +     +I +RFGY GL      T  E  R   
Sbjct: 99  TIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRV 158

Query: 91  EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
             +  YGG+ +G+SR                      +     L + GV IL T+GGD T
Sbjct: 159 TNIHHYGGTILGSSR-----------------GPQDPKEMVDTLERLGVNILFTVGGDGT 201

Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210
              A  + +  K +  +I+V G+PKTIDND+   H++ G  TA + +         E  +
Sbjct: 202 QRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVS 261

Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270
               + + ++MGR+ G++ A +A                         +   +PE   + 
Sbjct: 262 ANYGVGVVKLMGRDSGFIAAQAAVAS-------------------AQANICLVPENPISE 302

Query: 271 EVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWF 330
           +  +  L +      S  I V+EG  +D    +          D+ G+  L   ++G   
Sbjct: 303 QEVMSLLERRFCHSRSCVIIVAEGFGQDWGRGSG-------GYDASGNKKLI--DIGVIL 353

Query: 331 ADKFANMIKAERSIVQKS-------GYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGV 383
            +K    +KA +S    S        Y  R+ P  + D      +  LAV  A++G +G 
Sbjct: 354 TEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGC 413


>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
           2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
          Length = 320

 Score =  138 bits (350), Expect = 2e-33
 Identities = 77/357 (21%), Positives = 134/357 (37%), Gaps = 81/357 (22%)

Query: 31  KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
           K+  LT+GG AP +++ I  ++   + +    E++    GY GL  D  + +      + 
Sbjct: 4   KIGVLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLDRY---SV 58

Query: 91  EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
             +++ GG+ +G++R                +DEN   V+  +L + G+  L  IGGD +
Sbjct: 59  SDMINRGGTFLGSARFP------------EFRDENIRAVAIENLKKRGIDALVVIGGDGS 106

Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210
              A       +        +GLP TIDNDI     ++G  TA        D + +  S+
Sbjct: 107 YMGAM------RLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS 160

Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270
             R + + EVMGR CG LT  +A                       G + V +PE+ F+ 
Sbjct: 161 HQR-ISVVEVMGRYCGDLTLAAAIAG--------------------GCEFVVVPEVEFSR 199

Query: 271 EVEIERLSK-VMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW 329
           E  +  +   + + K    + ++E  C                                 
Sbjct: 200 EDLVNEIKAGIAKGKKHAIVAITEHMCD-------------------------------- 227

Query: 330 FADKFANMIKAE---RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGV 383
             D+ A+ I+ E    +     G+  R       D  L  +M   A+D  ++G  G 
Sbjct: 228 -VDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGR 283


>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus
           bulgaricus, transferase; 1.85A {Lactobacillus
           delbrueckii subsp}
          Length = 319

 Score =  118 bits (296), Expect = 3e-27
 Identities = 68/355 (19%), Positives = 116/355 (32%), Gaps = 75/355 (21%)

Query: 31  KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
           ++  LT+GG AP +++ +  +      I    E+   R+G+ GL+  D   +     ++ 
Sbjct: 3   RIGILTSGGDAPGMNAAVRAVTRV--AIANGLEVFGIRYGFAGLVAGDIFPLE---SEDV 57

Query: 91  EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
             L++  G+ + ++R                 +E         L + G+  +  IGGD +
Sbjct: 58  AHLINVSGTFLYSAR------------YPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGS 105

Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210
              A       +   +    +GLP TIDNDI     ++G  TA   +    D I +  S+
Sbjct: 106 YHGAL------QLTRHGFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASS 159

Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270
             R + I  VMGRNCG +                            G D + +PE  +++
Sbjct: 160 HHR-VFIVNVMGRNCGDIAMRVGVA--------------------CGADAIVIPERPYDV 198

Query: 271 EVEIERLSKVMEKK-GSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW 329
           E    RL +  E       + V+EG                                   
Sbjct: 199 EEIANRLKQAQESGKDHGLVVVAEGVMTA------------------------------D 228

Query: 330 FADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVT 384
                              G+  R       D  L  K+   AV   + G  G+ 
Sbjct: 229 QFMAELKKYGDFDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGLA 283


>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A
           {Bacillus stearothermophilus} SCOP: c.89.1.1 PDB:
           4pfk_A* 6pfk_A 1mto_A*
          Length = 319

 Score =  115 bits (289), Expect = 2e-26
 Identities = 67/354 (18%), Positives = 122/354 (34%), Gaps = 75/354 (21%)

Query: 31  KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90
           ++  LT+GG +P +++ I  ++          E+     GY GL+  +   +      + 
Sbjct: 3   RIGVLTSGGDSPGMNAAIRSVVRKAIY--HGVEVYGVYHGYAGLIAGNIKKLE---VGDV 57

Query: 91  EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150
             ++  GG+ +  +R       +  K+G               L + G+  L  IGGD +
Sbjct: 58  GDIIHRGGTILYTARCPEFKTEEGQKKG------------IEQLKKHGIQGLVVIGGDGS 105

Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210
              A  L        +    VG+P TIDNDI     ++G  TA        D I +  + 
Sbjct: 106 YQGAKKL------TEHGFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTAT- 158

Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270
           +     + EVMGR+ G +  +S                        G + + +PE  +++
Sbjct: 159 SHERTYVIEVMGRHAGDIALWSGLA--------------------GGAETILIPEADYDM 198

Query: 271 EVEIERLSKVMEKKGSVAIF-VSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW 329
              I RL +  E+    +I  V+EG    V    ++      +                 
Sbjct: 199 NDVIARLKRGHERGKKHSIIIVAEGVGSGVDFGRQIQEATGFE----------------- 241

Query: 330 FADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGV 383
                        + V   G+  R     + D  L  ++   AV+  + G  G 
Sbjct: 242 -------------TRVTVLGHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGR 282


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 83/521 (15%), Positives = 156/521 (29%), Gaps = 213/521 (40%)

Query: 4   FLSYISN----------LDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLIN 53
           FL Y+S+              +L   L+  E         +L    I     ++   L+ 
Sbjct: 64  FLGYVSSLVEPSKVGQFDQ--VLNLCLTEFENC-------YLEGNDI----HALAAKLLQ 110

Query: 54  HYNKILPKAELI---YYRFGYQGLLLDDKIT------ITEDMRQNAEQLLS-YGGSPIGN 103
             +  L K + +   Y        +            +   + +   QL++ +GG   GN
Sbjct: 111 ENDTTLVKTKELIKNYITARI---MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--GN 165

Query: 104 SRVKLTNFSD--CIKRGLIKKDENPLEVSAHHLMQ-----SGVTILHTIGGDDTNTTACD 156
           +        D       L+    + ++ SA  L +          + T G         +
Sbjct: 166 TDDYFEELRDLYQTYHVLV---GDLIKFSAETLSELIRTTLDAEKVFTQG--------LN 214

Query: 157 LLRYLK------EKNYNITV-VGLPKTIDNDIIPIHQ----------------------- 186
           +L +L+      +K+Y +++ +  P      +I + Q                       
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCP------LIGVIQLAHYVVTAKLLGFTPGELRSYLK 268

Query: 187 -----SLGALTAAQVSAC-----FFDNISNE---------RS--ATPR-SL---IIHEVM 221
                S G +TA  ++       FF ++            R   A P  SL   I+ + +
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328

Query: 222 GRNCGWLTAYSAHCYLNMIQD--RNYIDGFIFSPDFKGIDGV--YLPEMSFNLEVEIERL 277
             N G          L+ I +  +  +  ++        +    +LP             
Sbjct: 329 ENNEG-----VPSPMLS-ISNLTQEQVQDYV--------NKTNSHLPA------------ 362

Query: 278 SKVMEKKGSVAI------FVSEGACRDVI-MDNRLSSGEKIKRDSFGHILLDKMNVGSWF 330
                K+  +++       V  G  + +  ++  L    K K  S G   LD+  +    
Sbjct: 363 ----GKQVEISLVNGAKNLVVSGPPQSLYGLNLTL---RKAKAPS-G---LDQSRI---- 407

Query: 331 ADKFANMIKAERSIVQKSGYFAR----SAPSGSEDL----SLIKKMVVLAVDSAISGISG 382
              F+     ER    K  +  R    ++P  S  L     LI K      D   + +S 
Sbjct: 408 --PFS-----ER----KLKFSNRFLPVASPFHSHLLVPASDLINK------DLVKNNVS- 449

Query: 383 VTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILRHTG 423
              +D      ++I          V+DT     SD LR   
Sbjct: 450 FNAKD------IQI---------PVYDTFDG--SD-LRVLS 472



 Score = 39.9 bits (93), Expect = 0.001
 Identities = 50/312 (16%), Positives = 84/312 (26%), Gaps = 151/312 (48%)

Query: 2   VEFLSYISNLDMWILTGVLS-------FLEKDMVAHKVAFLTAG-GIAPCLSSIIGM--- 50
           +  L        +I  GV          L   ++   +       G+   + SI  +   
Sbjct: 300 ITVL-------FFI--GVRCYEAYPNTSLPPSILEDSLE---NNEGVPSPMLSISNLTQE 347

Query: 51  ----LINHYNKILPKAELIYYRFGYQGLLLDDKITIT-EDMRQN------AEQLLSYG-- 97
                +N  N  LP                  ++ I+  +  +N       + L  YG  
Sbjct: 348 QVQDYVNKTNSHLPA---------------GKQVEISLVNGAKNLVVSGPPQSL--YGLN 390

Query: 98  --------GSPIGNSRVKLTNFSDCIKRGLIKKDENP-LEVSA----HHLMQSGVT--IL 142
                    S +  SR+    FS   +R L  K  N  L V++    H L     +  I 
Sbjct: 391 LTLRKAKAPSGLDQSRIP---FS---ERKL--KFSNRFLPVASPFHSHLL--VPASDLIN 440

Query: 143 HTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH--------QSLGALTAA 194
             +  ++ +  A D+                        IP++        + L      
Sbjct: 441 KDLVKNNVSFNAKDIQ-----------------------IPVYDTFDGSDLRVLSG---- 473

Query: 195 QVSACFFDNISNERSATPR--SLIIHEVMGRNCGW--LTAYSA-HCYLNMIQDRNYIDGF 249
                   +I      + R    II         W   T + A H     I     +D  
Sbjct: 474 --------SI------SERIVDCIIRLP----VKWETTTQFKATH-----I-----LD-- 503

Query: 250 IFSPDFKGIDGV 261
            F P   G  G+
Sbjct: 504 -FGPG--GASGL 512



 Score = 32.2 bits (73), Expect = 0.22
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 35/105 (33%)

Query: 54  HYNKILPKA-ELIYYRFGYQGLLL---DDKI----TIT-EDMRQNAEQLLSYGGSPIGNS 104
           H    L  A +LI        +     D +I    T    D+R  +  +           
Sbjct: 430 HL---LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE--------- 477

Query: 105 RVKLTNFSDCIKRGLIKKD-ENPLEVSAHHLMQ------SGVTIL 142
             ++    DCI R  +    E   +  A H++       SG+ +L
Sbjct: 478 --RIV---DCIIRLPV--KWETTTQFKATHILDFGPGGASGLGVL 515



 Score = 29.9 bits (67), Expect = 1.0
 Identities = 50/277 (18%), Positives = 113/277 (40%), Gaps = 71/277 (25%)

Query: 46   SIIGMLINHYNKILPKAELIYY--------RFGYQGLL----LDDKITITEDMRQNAEQL 93
            SI+ ++IN+     P    I++        R  Y  ++    +D K+   +  ++  E  
Sbjct: 1660 SILDIVINN-----PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714

Query: 94   LSY-----GG--SPIGNSRVKLT-----NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTI 141
             SY      G  S    ++  LT      F D   +GLI  D      + H L +     
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT---FAGHSLGEYAA-- 1769

Query: 142  LHTIGGDDTNTTACDLLRYLKEKNYNITV-VGLPKTIDNDIIPIHQSLGALTAAQVSACF 200
            L ++    +  +  +++ Y       +T+ V +P+   +++   +  + A+   +V+A F
Sbjct: 1770 LASLADVMSIESLVEVVFY-----RGMTMQVAVPR---DELGRSNYGMIAINPGRVAASF 1821

Query: 201  FDNISNERSATPRSLIIHEVMGRNCGWLTA---YSAHCYLNMIQDRNYIDGFIFSPDFKG 257
                    S      ++  V G+  GWL     Y+       ++++ Y+     + D + 
Sbjct: 1822 --------SQEALQYVVERV-GKRTGWLVEIVNYN-------VENQQYVA----AGDLRA 1861

Query: 258  IDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEG 294
            +D V    ++F   ++++++  ++E + S+++   EG
Sbjct: 1862 LDTV-TNVLNF---IKLQKID-IIELQKSLSLEEVEG 1893


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 31.1 bits (69), Expect = 0.44
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 11/66 (16%)

Query: 273 EIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFAD 332
           E++  SKVME++        E A +D+   N+  S E+++++   + + DK    +++  
Sbjct: 100 ELDAASKVMEQEW------REKAKKDLEEWNQRQS-EQVEKNKINNRIADK----AFYQQ 148

Query: 333 KFANMI 338
             A++I
Sbjct: 149 PDADII 154


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
           termination, ATP-binding, cytoplasm, hydrolase,
           membrane; 2.80A {Schizosaccharomyces pombe}
          Length = 508

 Score = 29.7 bits (66), Expect = 1.4
 Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 56/177 (31%)

Query: 170 VVGLPKTIDNDIIPIHQSLGALTAAQVSACFFD---NISNERSATPRSLIIHEVMGRNCG 226
           V+G P T+  D++   Q    L A  +     D   N+ +++    +S+ I  ++ RN  
Sbjct: 239 VIGTPGTV-MDLMKRRQ----LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQ 293

Query: 227 WLTAYSAHCYLNMIQDR--NYIDGFIFSPD------------FKGIDGVYL----PEMSF 268
            +  +SA        +R   Y + F  +P+             +GI  +Y+     E  +
Sbjct: 294 -IVLFSA-----TFSERVEKYAERF--APNANEIRLKTEELSVEGIKQLYMDCQSEEHKY 345

Query: 269 NLEVEI-------------------ERLSKVMEKKG-SVAIFVS--EGACRDVIMDN 303
           N+ VE+                   E +++ M   G +VA      EGA RD IMD+
Sbjct: 346 NVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDS 402


>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A,
           isocitrate lyase, persistence, GLCB, structural
           genomics, PSI; 2.10A {Mycobacterium tuberculosis} SCOP:
           c.1.13.1 PDB: 1n8w_A* 2gq3_A*
          Length = 741

 Score = 26.8 bits (59), Expect = 9.5
 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 16/143 (11%)

Query: 6   SYISNLDMWILTGVLSFLEKDMVAH-KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAEL 64
                  MW +T +++ + +  +A  +    TA   +P  +++  +  +  +    +  L
Sbjct: 508 RAQVGKGMWTMTELMADMVETKIAQPRAGASTAWVPSPTAATLHALHYHQVDVAAVQQGL 567

Query: 65  IYYRFGYQGLLLDDKIT---------ITEDMRQNAEQLLSYGGSPI--GNSRVKLTNFSD 113
              R      LL   +          I E++  N + +L Y    +  G    K+ +  D
Sbjct: 568 AGKRRATIEQLLTIPLAKELAWAPDEIREEVDNNCQSILGYVVRWVDQGVGCSKVPDIHD 627

Query: 114 CIKRGLIKKDENPLEVSAHHLMQ 136
                L+ +D   L +S+  L  
Sbjct: 628 V---ALM-EDRATLRISSQLLAN 646


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0528    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,669,377
Number of extensions: 172760
Number of successful extensions: 579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 28
Length of query: 426
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 331
Effective length of database: 3,390,050
Effective search space: 1122106550
Effective search space used: 1122106550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)