RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus Liberibacter asiaticus str. psy62] (426 letters) >3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989 Score = 185 bits (472), Expect = 1e-47 Identities = 78/377 (20%), Positives = 144/377 (38%), Gaps = 82/377 (21%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 K+A +T+GG AP +++ + + I ++ GY GL+ + + E Q+ Sbjct: 212 KIAIITSGGDAPGMNAAVRAVT--RAGIFYGCKVYACYEGYTGLVKGGDM-LKELQWQDV 268 Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150 LLS GG+ IG +R K ++ + ++++ +G+ L GGD + Sbjct: 269 RGLLSIGGTIIGTARCKEF------------RERWGRLQACYNMVSNGIDALVVCGGDGS 316 Query: 151 NTTACDL-----------------LRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTA 193 T A + E + N+T+VGL +IDND+ ++GA ++ Sbjct: 317 LTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSS 376 Query: 194 AQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSP 253 + D I ++ R+ ++ EVMGR+CGWL S I Sbjct: 377 LERIIELVDYIDATAASHSRAFVV-EVMGRHCGWLGLMSG------IA------------ 417 Query: 254 DFKGIDGVYLPEMSFNLEVEIERLSKVMEK-----KGSVAIFVSEGACRDVIMDNRLSSG 308 G D +++PE + + L KV + + + V+EGA +D++L+ Sbjct: 418 --TGADYIFIPERPPSESNWKDDLKKVCLRHREKGRRKTTVIVAEGA-----IDDQLN-- 468 Query: 309 EKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKM 368 + S I + + + + G+ R + D L Sbjct: 469 ----------------PITSEEVKDVLVEIGLD-TRITRLGHVQRGGAPCAFDRFLATVQ 511 Query: 369 VVLAVDSAISGISGVTG 385 V AV + + + Sbjct: 512 GVDAVRAVLESTPAIPS 528 Score = 132 bits (332), Expect = 2e-31 Identities = 51/279 (18%), Positives = 89/279 (31%), Gaps = 56/279 (20%) Query: 30 HKVAFLTAGGIAP----CLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITED 85 +A + G + +++ R G+ GL+ + Sbjct: 599 LNIAIIHVGAPTSALNPATRVATLNSLAKGHRV------FAIRNGFAGLIRHGAVRELN- 651 Query: 86 MRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTI 145 + E + GGS IG +R + + A++ Q L I Sbjct: 652 -WIDVEDWHNTGGSEIGTNR---------------SLPSDDMGTVAYYFQQYKFDGLIII 695 Query: 146 GGDDTNTTACDLLRYL-KEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNI 204 GG + T +L + +NI + LP T+ N++ SLG+ T + + D + Sbjct: 696 GGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLNTLSGYCDAV 755 Query: 205 SNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLP 264 SA+ R + EV G G+L +Y+ G VY P Sbjct: 756 KQSASASRRRTFVVEVQGGYSGYLASYAGLI--------------------TGALAVYTP 795 Query: 265 EMSFNLEVEIERLSKVMEK--------KGSVAIFVSEGA 295 E NL+ E + + + +E A Sbjct: 796 ENPINLQTVQEDIELLTRTYEEDDGKNRSGKIFIHNEKA 834 >3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 941 Score = 183 bits (467), Expect = 4e-47 Identities = 65/377 (17%), Positives = 132/377 (35%), Gaps = 80/377 (21%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 + +T+GG +P ++ + ++ I ++ GY+GL+ + I E + Sbjct: 183 TIGVMTSGGDSPGMNPFVRAVVRA--GIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDV 240 Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150 L GG+ IG +R K ++ + + +++ G+ L GGD + Sbjct: 241 RGWLVEGGTNIGTARCKEF------------RERSGRLKACKNMIDMGIDALIVCGGDGS 288 Query: 151 NTTACDL-----------------LRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTA 193 T A + + N+ + G +IDND+ ++GA ++ Sbjct: 289 LTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSS 348 Query: 194 AQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSP 253 D I ++ R+ I+ EVMGR+CGWL + Sbjct: 349 LDRICRAIDYIDATANSHSRAFIV-EVMGRHCGWLGLLAGLA------------------ 389 Query: 254 DFKGIDGVYLPEMSFNLEVEIERLSKVMEK-----KGSVAIFVSEGACRDVIMDNRLSSG 308 D + +PE + +++ ++ K K + V+EGA + Sbjct: 390 --TSADYILIPEKPASSREWQDQMCDIVGKHRARGKRKTIVIVAEGAISN--------DL 439 Query: 309 EKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKM 368 I D +L++++ + + V G+ R + + D Sbjct: 440 SPISCDQVKDVLVNRLGL---------------DTRVTTLGHVQRGGTAVAFDRIYATLQ 484 Query: 369 VVLAVDSAISGISGVTG 385 V AV++ + + Sbjct: 485 GVEAVNAVLECDADTPS 501 Score = 131 bits (332), Expect = 2e-31 Identities = 56/306 (18%), Positives = 100/306 (32%), Gaps = 55/306 (17%) Query: 3 EFLSYISNLDMWILTGVLSFLEKDMVAHKVAFLTAGGIAP----CLSSIIGMLINHYNKI 58 EF+ ++ N + K+A + G A + S+ ++ + Sbjct: 545 EFVEHMKNFISTNSADHVPPSLPLEKRKKIAIINVGAPAGGMNSAVYSMATYCMSRGHVP 604 Query: 59 LPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRG 118 G+ GL + + + E S GGS IG +R Sbjct: 605 ------YAIHNGFSGLARHESVRSIN--WLDIEGWGSLGGSEIGTNRTLPN--------- 647 Query: 119 LIKKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYL-KEKNYNITVVGLPKTI 177 + + + A+ + G L +GG + + L R + I +V +P TI Sbjct: 648 -----DADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATI 702 Query: 178 DNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYL 237 N++ SLG+ T + D I +AT + + EV G N G++ ++ Sbjct: 703 SNNVPGTEYSLGSDTCLNSFMEYCDVIKQSAAATRNRVFVVEVQGGNSGYIATHAQ---- 758 Query: 238 NMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEK--------KGSVAI 289 + G Y+PE +L ++ + E K I Sbjct: 759 --LAC--------------GAQISYVPEEGISLAQLEMDINSLKESFANDQGKTKSGRLI 802 Query: 290 FVSEGA 295 SE A Sbjct: 803 LKSENA 808 >3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Length = 419 Score = 181 bits (459), Expect = 4e-46 Identities = 78/362 (21%), Positives = 135/362 (37%), Gaps = 35/362 (9%) Query: 27 MVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIY-YRFGYQGLLLDDKITITED 85 M A + +GG+ +++ +I K K IY R G G L +D I ++ Sbjct: 1 MAAKNAFYAQSGGVTAVINASAAGVIEAARKQSGKIGRIYAGRNGIIGALTEDLIDTGQE 60 Query: 86 MRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTI 145 L G+ R KL + + + E +EV H + Sbjct: 61 SDAAISALRYTPSGAFGSCRYKLKSLEQNRR-----EYERLIEVFKAH----DIGYFFYN 111 Query: 146 GGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNIS 205 GG D+ T + + Y I + +PKT+DND+ G + A+ A S Sbjct: 112 GGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKYIAVSTLEAS 171 Query: 206 NERSATPRS---LIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVY 262 + ++ + + + EVMGR+ GW+ A SP+ + + Sbjct: 172 FDVASMSATSTKVFVLEVMGRHAGWIAAAGGLAS---------------SPEREIPVVIL 216 Query: 263 LPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLD 322 PE+SF+ + + ++ ++K G ++ VSEG D+ ++ RD+FGH L Sbjct: 217 FPEISFDKQKFLAKVDSCVKKFGYCSVVVSEGV----KGDDGKFLSDQGVRDAFGHAQLG 272 Query: 323 KMNVGSWFADKFANMIKAE-RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGIS 381 V A + + V A + D+ M AV+ A+ G + Sbjct: 273 --GVAPVVASMVKEGLGLKYHWGVADYLQRAARHIASKTDVEQAYAMGQAAVEFAVQGHN 330 Query: 382 GV 383 V Sbjct: 331 SV 332 >2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase; HET: FBP; 2.11A {Borrelia burgdorferi B31} SCOP: c.89.1.1 PDB: 1kzh_A* Length = 555 Score = 169 bits (430), Expect = 9e-43 Identities = 77/416 (18%), Positives = 151/416 (36%), Gaps = 71/416 (17%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 + + +GG AP ++I + + K P ++L ++ G GLL +DKI +TE + + Sbjct: 74 NIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINS- 132 Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150 + GG I +S R I+ +E+ + ++ + + IGGDD+ Sbjct: 133 --YRNTGGFDIVSSG-----------RTKIETEEHYNKALFVA-KENNLNAIIIIGGDDS 178 Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH--QSLGALTAAQVSACFFDNISNER 208 NT A L Y K+ NI V+G+PKTID D+ H S G +A ++ + N+ + Sbjct: 179 NTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDA 238 Query: 209 SATPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDF------------- 255 +T + ++MGR+ + A L + + + + Sbjct: 239 MSTKKYWHFVKLMGRSASHVALECA---LKTHPNICIVSEEVLAKKKTLSEIIDEMVSVI 295 Query: 256 -------KGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSG 308 V +PE E++ L + +G + + + ++ Sbjct: 296 LKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKL 355 Query: 309 EK---------------------IKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQK 347 ++RD G+ + ++ F + + + + + Sbjct: 356 SDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEY 415 Query: 348 S----------GYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVTGEDERENNI 393 GY RSA + D + AV ++G++G + N Sbjct: 416 KGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLK 471 >2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Length = 487 Score = 169 bits (430), Expect = 9e-43 Identities = 84/360 (23%), Positives = 141/360 (39%), Gaps = 52/360 (14%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 + +T GGI P L+ +I + + +I +RFGY GL T E R Sbjct: 99 TIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRV 158 Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150 + YGG+ +G+SR + L + GV IL T+GGD T Sbjct: 159 TNIHHYGGTILGSSR-----------------GPQDPKEMVDTLERLGVNILFTVGGDGT 201 Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210 A + + K + +I+V G+PKTIDND+ H++ G TA + + E + Sbjct: 202 QRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVS 261 Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270 + + ++MGR+ G++ A +A + +PE + Sbjct: 262 ANYGVGVVKLMGRDSGFIAAQAAVAS-------------------AQANICLVPENPISE 302 Query: 271 EVEIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWF 330 + + L + S I V+EG +D + D+ G+ L ++G Sbjct: 303 QEVMSLLERRFCHSRSCVIIVAEGFGQDWGRGSG-------GYDASGNKKLI--DIGVIL 353 Query: 331 ADKFANMIKAERSIVQKS-------GYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGV 383 +K +KA +S S Y R+ P + D + LAV A++G +G Sbjct: 354 TEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGATGC 413 >1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Length = 320 Score = 138 bits (350), Expect = 2e-33 Identities = 77/357 (21%), Positives = 134/357 (37%), Gaps = 81/357 (22%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 K+ LT+GG AP +++ I ++ + + E++ GY GL D + + + Sbjct: 4 KIGVLTSGGDAPGMNAAIRGVV--RSALTEGLEVMGIYDGYLGLYEDRMVQLDRY---SV 58 Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150 +++ GG+ +G++R +DEN V+ +L + G+ L IGGD + Sbjct: 59 SDMINRGGTFLGSARFP------------EFRDENIRAVAIENLKKRGIDALVVIGGDGS 106 Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210 A + +GLP TIDNDI ++G TA D + + S+ Sbjct: 107 YMGAM------RLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS 160 Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270 R + + EVMGR CG LT +A G + V +PE+ F+ Sbjct: 161 HQR-ISVVEVMGRYCGDLTLAAAIAG--------------------GCEFVVVPEVEFSR 199 Query: 271 EVEIERLSK-VMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW 329 E + + + + K + ++E C Sbjct: 200 EDLVNEIKAGIAKGKKHAIVAITEHMCD-------------------------------- 227 Query: 330 FADKFANMIKAE---RSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGV 383 D+ A+ I+ E + G+ R D L +M A+D ++G G Sbjct: 228 -VDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGGR 283 >1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} Length = 319 Score = 118 bits (296), Expect = 3e-27 Identities = 68/355 (19%), Positives = 116/355 (32%), Gaps = 75/355 (21%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 ++ LT+GG AP +++ + + I E+ R+G+ GL+ D + ++ Sbjct: 3 RIGILTSGGDAPGMNAAVRAVTRV--AIANGLEVFGIRYGFAGLVAGDIFPLE---SEDV 57 Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150 L++ G+ + ++R +E L + G+ + IGGD + Sbjct: 58 AHLINVSGTFLYSAR------------YPEFAEEEGQLAGIEQLKKHGIDAVVVIGGDGS 105 Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210 A + + +GLP TIDNDI ++G TA + D I + S+ Sbjct: 106 YHGAL------QLTRHGFNSIGLPGTIDNDIPYTDATIGYDTACMTAMDAIDKIRDTASS 159 Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270 R + I VMGRNCG + G D + +PE +++ Sbjct: 160 HHR-VFIVNVMGRNCGDIAMRVGVA--------------------CGADAIVIPERPYDV 198 Query: 271 EVEIERLSKVMEKK-GSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW 329 E RL + E + V+EG Sbjct: 199 EEIANRLKQAQESGKDHGLVVVAEGVMTA------------------------------D 228 Query: 330 FADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGVT 384 G+ R D L K+ AV + G G+ Sbjct: 229 QFMAELKKYGDFDVRANVLGHMQRGGTPTVSDRVLASKLGSEAVHLLLEGKGGLA 283 >3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Bacillus stearothermophilus} SCOP: c.89.1.1 PDB: 4pfk_A* 6pfk_A 1mto_A* Length = 319 Score = 115 bits (289), Expect = 2e-26 Identities = 67/354 (18%), Positives = 122/354 (34%), Gaps = 75/354 (21%) Query: 31 KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAELIYYRFGYQGLLLDDKITITEDMRQNA 90 ++ LT+GG +P +++ I ++ E+ GY GL+ + + + Sbjct: 3 RIGVLTSGGDSPGMNAAIRSVVRKAIY--HGVEVYGVYHGYAGLIAGNIKKLE---VGDV 57 Query: 91 EQLLSYGGSPIGNSRVKLTNFSDCIKRGLIKKDENPLEVSAHHLMQSGVTILHTIGGDDT 150 ++ GG+ + +R + K+G L + G+ L IGGD + Sbjct: 58 GDIIHRGGTILYTARCPEFKTEEGQKKG------------IEQLKKHGIQGLVVIGGDGS 105 Query: 151 NTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSA 210 A L + VG+P TIDNDI ++G TA D I + + Sbjct: 106 YQGAKKL------TEHGFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKIRDTAT- 158 Query: 211 TPRSLIIHEVMGRNCGWLTAYSAHCYLNMIQDRNYIDGFIFSPDFKGIDGVYLPEMSFNL 270 + + EVMGR+ G + +S G + + +PE +++ Sbjct: 159 SHERTYVIEVMGRHAGDIALWSGLA--------------------GGAETILIPEADYDM 198 Query: 271 EVEIERLSKVMEKKGSVAIF-VSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSW 329 I RL + E+ +I V+EG V ++ + Sbjct: 199 NDVIARLKRGHERGKKHSIIIVAEGVGSGVDFGRQIQEATGFE----------------- 241 Query: 330 FADKFANMIKAERSIVQKSGYFARSAPSGSEDLSLIKKMVVLAVDSAISGISGV 383 + V G+ R + D L ++ AV+ + G G Sbjct: 242 -------------TRVTVLGHVQRGGSPTAFDRVLASRLGARAVELLLEGKGGR 282 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 52.3 bits (125), Expect = 2e-07 Identities = 83/521 (15%), Positives = 156/521 (29%), Gaps = 213/521 (40%) Query: 4 FLSYISN----------LDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLIN 53 FL Y+S+ +L L+ E +L I ++ L+ Sbjct: 64 FLGYVSSLVEPSKVGQFDQ--VLNLCLTEFENC-------YLEGNDI----HALAAKLLQ 110 Query: 54 HYNKILPKAELI---YYRFGYQGLLLDDKIT------ITEDMRQNAEQLLS-YGGSPIGN 103 + L K + + Y + + + + QL++ +GG GN Sbjct: 111 ENDTTLVKTKELIKNYITARI---MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--GN 165 Query: 104 SRVKLTNFSD--CIKRGLIKKDENPLEVSAHHLMQ-----SGVTILHTIGGDDTNTTACD 156 + D L+ + ++ SA L + + T G + Sbjct: 166 TDDYFEELRDLYQTYHVLV---GDLIKFSAETLSELIRTTLDAEKVFTQG--------LN 214 Query: 157 LLRYLK------EKNYNITV-VGLPKTIDNDIIPIHQ----------------------- 186 +L +L+ +K+Y +++ + P +I + Q Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCP------LIGVIQLAHYVVTAKLLGFTPGELRSYLK 268 Query: 187 -----SLGALTAAQVSAC-----FFDNISNE---------RS--ATPR-SL---IIHEVM 221 S G +TA ++ FF ++ R A P SL I+ + + Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328 Query: 222 GRNCGWLTAYSAHCYLNMIQD--RNYIDGFIFSPDFKGIDGV--YLPEMSFNLEVEIERL 277 N G L+ I + + + ++ + +LP Sbjct: 329 ENNEG-----VPSPMLS-ISNLTQEQVQDYV--------NKTNSHLPA------------ 362 Query: 278 SKVMEKKGSVAI------FVSEGACRDVI-MDNRLSSGEKIKRDSFGHILLDKMNVGSWF 330 K+ +++ V G + + ++ L K K S G LD+ + Sbjct: 363 ----GKQVEISLVNGAKNLVVSGPPQSLYGLNLTL---RKAKAPS-G---LDQSRI---- 407 Query: 331 ADKFANMIKAERSIVQKSGYFAR----SAPSGSEDL----SLIKKMVVLAVDSAISGISG 382 F+ ER K + R ++P S L LI K D + +S Sbjct: 408 --PFS-----ER----KLKFSNRFLPVASPFHSHLLVPASDLINK------DLVKNNVS- 449 Query: 383 VTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILRHTG 423 +D ++I V+DT SD LR Sbjct: 450 FNAKD------IQI---------PVYDTFDG--SD-LRVLS 472 Score = 39.9 bits (93), Expect = 0.001 Identities = 50/312 (16%), Positives = 84/312 (26%), Gaps = 151/312 (48%) Query: 2 VEFLSYISNLDMWILTGVLS-------FLEKDMVAHKVAFLTAG-GIAPCLSSIIGM--- 50 + L +I GV L ++ + G+ + SI + Sbjct: 300 ITVL-------FFI--GVRCYEAYPNTSLPPSILEDSLE---NNEGVPSPMLSISNLTQE 347 Query: 51 ----LINHYNKILPKAELIYYRFGYQGLLLDDKITIT-EDMRQN------AEQLLSYG-- 97 +N N LP ++ I+ + +N + L YG Sbjct: 348 QVQDYVNKTNSHLPA---------------GKQVEISLVNGAKNLVVSGPPQSL--YGLN 390 Query: 98 --------GSPIGNSRVKLTNFSDCIKRGLIKKDENP-LEVSA----HHLMQSGVT--IL 142 S + SR+ FS +R L K N L V++ H L + I Sbjct: 391 LTLRKAKAPSGLDQSRIP---FS---ERKL--KFSNRFLPVASPFHSHLL--VPASDLIN 440 Query: 143 HTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDNDIIPIH--------QSLGALTAA 194 + ++ + A D+ IP++ + L Sbjct: 441 KDLVKNNVSFNAKDIQ-----------------------IPVYDTFDGSDLRVLSG---- 473 Query: 195 QVSACFFDNISNERSATPR--SLIIHEVMGRNCGW--LTAYSA-HCYLNMIQDRNYIDGF 249 +I + R II W T + A H I +D Sbjct: 474 --------SI------SERIVDCIIRLP----VKWETTTQFKATH-----I-----LD-- 503 Query: 250 IFSPDFKGIDGV 261 F P G G+ Sbjct: 504 -FGPG--GASGL 512 Score = 32.2 bits (73), Expect = 0.22 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 35/105 (33%) Query: 54 HYNKILPKA-ELIYYRFGYQGLLL---DDKI----TIT-EDMRQNAEQLLSYGGSPIGNS 104 H L A +LI + D +I T D+R + + Sbjct: 430 HL---LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE--------- 477 Query: 105 RVKLTNFSDCIKRGLIKKD-ENPLEVSAHHLMQ------SGVTIL 142 ++ DCI R + E + A H++ SG+ +L Sbjct: 478 --RIV---DCIIRLPV--KWETTTQFKATHILDFGPGGASGLGVL 515 Score = 29.9 bits (67), Expect = 1.0 Identities = 50/277 (18%), Positives = 113/277 (40%), Gaps = 71/277 (25%) Query: 46 SIIGMLINHYNKILPKAELIYY--------RFGYQGLL----LDDKITITEDMRQNAEQL 93 SI+ ++IN+ P I++ R Y ++ +D K+ + ++ E Sbjct: 1660 SILDIVINN-----PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714 Query: 94 LSY-----GG--SPIGNSRVKLT-----NFSDCIKRGLIKKDENPLEVSAHHLMQSGVTI 141 SY G S ++ LT F D +GLI D + H L + Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT---FAGHSLGEYAA-- 1769 Query: 142 LHTIGGDDTNTTACDLLRYLKEKNYNITV-VGLPKTIDNDIIPIHQSLGALTAAQVSACF 200 L ++ + + +++ Y +T+ V +P+ +++ + + A+ +V+A F Sbjct: 1770 LASLADVMSIESLVEVVFY-----RGMTMQVAVPR---DELGRSNYGMIAINPGRVAASF 1821 Query: 201 FDNISNERSATPRSLIIHEVMGRNCGWLTA---YSAHCYLNMIQDRNYIDGFIFSPDFKG 257 S ++ V G+ GWL Y+ ++++ Y+ + D + Sbjct: 1822 --------SQEALQYVVERV-GKRTGWLVEIVNYN-------VENQQYVA----AGDLRA 1861 Query: 258 IDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEG 294 +D V ++F ++++++ ++E + S+++ EG Sbjct: 1862 LDTV-TNVLNF---IKLQKID-IIELQKSLSLEEVEG 1893 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 31.1 bits (69), Expect = 0.44 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 11/66 (16%) Query: 273 EIERLSKVMEKKGSVAIFVSEGACRDVIMDNRLSSGEKIKRDSFGHILLDKMNVGSWFAD 332 E++ SKVME++ E A +D+ N+ S E+++++ + + DK +++ Sbjct: 100 ELDAASKVMEQEW------REKAKKDLEEWNQRQS-EQVEKNKINNRIADK----AFYQQ 148 Query: 333 KFANMI 338 A++I Sbjct: 149 PDADII 154 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} Length = 508 Score = 29.7 bits (66), Expect = 1.4 Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 56/177 (31%) Query: 170 VVGLPKTIDNDIIPIHQSLGALTAAQVSACFFD---NISNERSATPRSLIIHEVMGRNCG 226 V+G P T+ D++ Q L A + D N+ +++ +S+ I ++ RN Sbjct: 239 VIGTPGTV-MDLMKRRQ----LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQ 293 Query: 227 WLTAYSAHCYLNMIQDR--NYIDGFIFSPD------------FKGIDGVYL----PEMSF 268 + +SA +R Y + F +P+ +GI +Y+ E + Sbjct: 294 -IVLFSA-----TFSERVEKYAERF--APNANEIRLKTEELSVEGIKQLYMDCQSEEHKY 345 Query: 269 NLEVEI-------------------ERLSKVMEKKG-SVAIFVS--EGACRDVIMDN 303 N+ VE+ E +++ M G +VA EGA RD IMD+ Sbjct: 346 NVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDS 402 >1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A, isocitrate lyase, persistence, GLCB, structural genomics, PSI; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.13.1 PDB: 1n8w_A* 2gq3_A* Length = 741 Score = 26.8 bits (59), Expect = 9.5 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 16/143 (11%) Query: 6 SYISNLDMWILTGVLSFLEKDMVAH-KVAFLTAGGIAPCLSSIIGMLINHYNKILPKAEL 64 MW +T +++ + + +A + TA +P +++ + + + + L Sbjct: 508 RAQVGKGMWTMTELMADMVETKIAQPRAGASTAWVPSPTAATLHALHYHQVDVAAVQQGL 567 Query: 65 IYYRFGYQGLLLDDKIT---------ITEDMRQNAEQLLSYGGSPI--GNSRVKLTNFSD 113 R LL + I E++ N + +L Y + G K+ + D Sbjct: 568 AGKRRATIEQLLTIPLAKELAWAPDEIREEVDNNCQSILGYVVRWVDQGVGCSKVPDIHD 627 Query: 114 CIKRGLIKKDENPLEVSAHHLMQ 136 L+ +D L +S+ L Sbjct: 628 V---ALM-EDRATLRISSQLLAN 646 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.138 0.402 Gapped Lambda K H 0.267 0.0528 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,669,377 Number of extensions: 172760 Number of successful extensions: 579 Number of sequences better than 10.0: 1 Number of HSP's gapped: 532 Number of HSP's successfully gapped: 28 Length of query: 426 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 331 Effective length of database: 3,390,050 Effective search space: 1122106550 Effective search space used: 1122106550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.6 bits)