BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780227|ref|YP_003064640.1|
pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Candidatus
Liberibacter asiaticus str. psy62]
         (426 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 426

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/426 (100%), Positives = 426/426 (100%)

Query: 1   MVEFLSYISNLDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILP 60
           MVEFLSYISNLDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILP
Sbjct: 1   MVEFLSYISNLDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKILP 60

Query: 61  KAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLI 120
           KAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLI
Sbjct: 61  KAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVKLTNFSDCIKRGLI 120

Query: 121 KKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND 180
           KKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND
Sbjct: 121 KKDENPLEVSAHHLMQSGVTILHTIGGDDTNTTACDLLRYLKEKNYNITVVGLPKTIDND 180

Query: 181 IIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMI 240
           IIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMI
Sbjct: 181 IIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRNCGWLTAYSAHCYLNMI 240

Query: 241 QDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVI 300
           QDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVI
Sbjct: 241 QDRNYIDGFIFSPDFKGIDGVYLPEMSFNLEVEIERLSKVMEKKGSVAIFVSEGACRDVI 300

Query: 301 MDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKSGYFARSAPSGSE 360
           MDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKSGYFARSAPSGSE
Sbjct: 301 MDNRLSSGEKIKRDSFGHILLDKMNVGSWFADKFANMIKAERSIVQKSGYFARSAPSGSE 360

Query: 361 DLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILR 420
           DLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILR
Sbjct: 361 DLSLIKKMVVLAVDSAISGISGVTGEDERENNILRIIKFEDIRGGRVFDTNTPWFSDILR 420

Query: 421 HTGQKS 426
           HTGQKS
Sbjct: 421 HTGQKS 426


>gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 346

 Score = 26.2 bits (56), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 28/110 (25%)

Query: 10  NLDMWILTGVLSFLEKDMVAHKVAFLTAGGIAPCLSSIIGMLI------------NHYNK 57
           N D++   G LSF + +  A  +  +   GI P + +I+  L              H+N 
Sbjct: 241 NKDVFGFVG-LSFYKNN--ADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQHFNS 297

Query: 58  ILPKAELIYYRFGYQGLLLDDKITITEDMRQNAEQLLSYGGSPIGNSRVK 107
           +L   E + +             +++++M     QL  YG  PI N   K
Sbjct: 298 VLGLREYVSF-------------SVSDEMMAPDSQLFQYGLIPISNEERK 334


>gi|254781211|ref|YP_003065624.1| hypothetical protein CLIBASIA_05590 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 234

 Score = 25.8 bits (55), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 24  EKDMVAHKVAFLTAGGIAPCLSSIIGMLINHYNKI 58
           E ++ AH  AF  AG  A     ++  L++H  KI
Sbjct: 75  EAEVTAHIEAFKEAGVDARVAQKVVDKLVDHGRKI 109


>gi|254780226|ref|YP_003064639.1| translation-associated GTPase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 367

 Score = 25.4 bits (54), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 170 VVGLPKTIDNDIIPIHQSLGALTAAQV 196
           V  L +++D+D IPI +SL  LTA  +
Sbjct: 179 VRSLLESLDSDAIPIFKSLNLLTAKPI 205


>gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 864

 Score = 23.5 bits (49), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 165 NYNITVVGLPKTIDNDIIPIHQSLGALTAAQVSACFFDNISNERSATPRSLIIHEVMGRN 224
           N N  +     ++  DI+ I + LG    + V       I+N++ A+  + ++ + +GRN
Sbjct: 296 NVNTILTSELASLSKDIV-IARELGPNADSFVKQMIVQTIANDQEASAGNKVLKDWLGRN 354


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.138    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 281,220
Number of Sequences: 1233
Number of extensions: 12041
Number of successful extensions: 28
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 6
length of query: 426
length of database: 328,796
effective HSP length: 76
effective length of query: 350
effective length of database: 235,088
effective search space: 82280800
effective search space used: 82280800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)