HHsearch alignment for GI: 254780228 and conserved domain: COG2899
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=100.00 E-value=0 Score=633.55 Aligned_cols=335 Identities=41% Similarity=0.801 Sum_probs=323.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 79987669999999999999998763365302467789999999999999869899999999862999999899999999
Q gi|254780228|r 9 SLIHHFRWAILVTVAGFLCGLGIGWQFTHTLSGTISTVYICIILAVVEISLSFENAILNAKNLQKMSSIWQKRFLTWGIL 88 (346)
Q Consensus 9 ~~~~~f~ws~~~~~lal~f~~~i~~~~g~~~~~~~~a~~i~~~L~vLE~sLSvDNafV~a~If~~fp~~~q~rvL~~GIl 88 (346)
T Consensus 2 ~~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~---~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk~MS~~Wqk~FLT~GIl 78 (346)
T COG2899 2 TAFRYFGWSFIVTVIALALAAWLGYEYGGT---MWTALFICAVLAVLEISLSFDNAIVNAAILKDMSPFWQKRFLTWGIL 78 (346)
T ss_pred CHHHHCCHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 417642549999999999987775762473---49999999999996301021187861898875369999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 99999999999999999842006899887402501466777641128999999999999999851155444200134445
Q gi|254780228|r 89 IAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIA 168 (346)
Q Consensus 89 gAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~I~~~gG~fLl~~~lk~~~~~~~e~~w~~~~E~~ 168 (346)
T Consensus 79 IAVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd~erd~hWl~~iE~~ 158 (346)
T COG2899 79 IAVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAHPQIAAFGGTFLLMVFLDFFFDHERDVHWLKWIERP 158 (346)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99976488777889888617790899998706937789999855830556400899999988731840013366668789
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 555212110136789998765320237664-0101000000124332100011103554434311234699999999998
Q gi|254780228|r 169 MSHLSKIKGIKIFIVLSIIFGISNILPTNE-MYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNLFLYLEII 247 (346)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpl~~~li~IE~~ 247 (346)
T Consensus 159 ~arig~~~~v~vi~~~~lll~~s~~l~~~~~~~~~l~Agl~GlltyLlV~~vg~l~~~~~~~~~~a~kaGla~FLYLEVL 238 (346)
T COG2899 159 LARIGRLGGVEVIVAIALLLLFSRLLTASADRGTVLIAGLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVL 238 (346)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH
T ss_conf 98744778702089999999999883475544304297799999999999842285428888766521325678889887
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHH
Q ss_conf 87875411134552132099999999999999999999999987998610024789999999999999842-20288258
Q gi|254780228|r 248 DASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEHGSYYSIFVLSVIMFLQT-IVDIPEIF 326 (346)
Q Consensus 248 D~~FA~DSVpAafAIT~dpfIV~~g~~~gilglRslt~yFv~~g~l~~f~yLe~ga~~~l~~igvkmll~~-~~~iPe~~ 326 (346)
T Consensus 239 DAsFSFDGViGAFAiT~d~vIIalGLgIGAmfVRSiTi~LV~kgTL~~y~yLEHGAhyAI~~Laviml~s~~~~hIpEvv 318 (346)
T COG2899 239 DASFSFDGVIGAFAITTDPVIIALGLGIGAMFVRSITIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLSTDRFHIPEVV 318 (346)
T ss_pred HHHCCCCCEEEEEEECCCCHHHEECCCHHHEEEEEEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEHHHHH
T ss_conf 31001265233320015720310003213034251588988637287778775035899999999999851004237899
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999974239
Q gi|254780228|r 327 TGTSSTILIFLSIYSSIKNK 346 (346)
Q Consensus 327 s~~i~~~~i~~~i~~Si~~k 346 (346)
T Consensus 319 TgL~Ga~fIgls~~sSv~~N 338 (346)
T COG2899 319 TGLVGAVFIGLSLWSSVRYN 338 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 87667999999999999986