Query gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 346
No_of_seqs 131 out of 603
Neff 5.8
Searched_HMMs 33803
Date Mon May 23 20:48:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780228.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2kih_A Matrix protein 2; S31N 48.1 15 0.00043 15.4 3.5 36 263-303 5-42 (43)
2 >2g8l_A 287AA long hypothetica 12.8 59 0.0018 11.6 0.4 11 251-261 56-66 (80)
3 >3bkd_A Transmembrane domain o 10.8 77 0.0023 10.9 2.5 17 263-280 1-17 (26)
4 >1kf6_D Fumarate reductase 13 10.2 81 0.0024 10.7 5.0 69 75-156 5-81 (119)
5 >2j7u_A RNA dependent RNA poly 6.8 1.2E+02 0.0035 9.7 2.4 30 124-153 73-102 (110)
6 >2bb6_A TCII, TC II, transcoba 6.5 63 0.0019 11.4 -1.5 19 30-48 37-55 (117)
7 >2q04_A Acetoin utilization pr 6.1 1.4E+02 0.004 9.4 1.2 17 207-223 72-88 (211)
8 >1lns_A X-prolyl dipeptidyl am 5.8 40 0.0012 12.7 -2.8 7 14-20 25-31 (82)
9 >1p42_A UDP-3-O-[3-hydroxymyri 5.8 35 0.001 13.0 -3.2 7 60-66 21-27 (39)
10 >2ond_A Cleavage stimulation f 5.5 1.5E+02 0.0046 9.0 0.5 11 290-300 2-12 (29)
No 1
>>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* (A:)
Probab=48.06 E-value=15 Score=15.35 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q ss_conf 32099999999999999999999999987998--610024789
Q gi|254780228|r 263 TKNFFIIVIGLTIGAIYVRSMTLLMLKQGILN--KYKYLEHGS 303 (346)
Q Consensus 263 T~dpfIV~~g~~~gilglRslt~yFv~~g~l~--~f~yLe~ga 303 (346)
|+||.+ .+++++||+-+- ...+..+.- -|+.+|||+
T Consensus 5 ssdplv-~aasiiGilHli----LWildrlffkciyrr~kygl 42 (43)
T 2kih_A 5 SSDPLV-VAANIIGILHLI----LWILDRLFFKSIYRFFEHGL 42 (43)
T ss_dssp -CCHHH-HHHHHHHHHHHH----HHHHHHHHCCCHHHHHHHHC
T ss_pred CCCCHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCC
T ss_conf 886099-999999999999----99999999999999984046
No 2
>>2g8l_A 287AA long hypothetical protein; 3258004, structural genomics, PSI, protein structure initiative, joint center for structural genomics; 2.04A {Pyrococcus horikoshii} (A:1-80)
Probab=12.79 E-value=59 Score=11.57 Aligned_cols=11 Identities=0% Similarity=-0.034 Sum_probs=8.5
Q ss_pred HHHHHHHHHHH
Q ss_conf 75411134552
Q gi|254780228|r 251 LSLDGVISSFA 261 (346)
Q Consensus 251 FA~DSVpAafA 261 (346)
|.=|||||+.+
T Consensus 56 ~~E~SIPAi~G 66 (80)
T 2g8l_A 56 YNENAIPAIAG 66 (80)
T ss_dssp SSTTCCHHHHH
T ss_pred CCCCCCHHHHH
T ss_conf 36888769999
No 3
>>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral protein, membrane protein; HET: MSE BOG; 2.05A {Synthetic} (A:)
Probab=10.79 E-value=77 Score=10.87 Aligned_cols=17 Identities=6% Similarity=0.313 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 320999999999999999
Q gi|254780228|r 263 TKNFFIIVIGLTIGAIYV 280 (346)
Q Consensus 263 T~dpfIV~~g~~~gilgl 280 (346)
|+||.++ +++++||+-+
T Consensus 1 ssdplvv-aasiigilhl 17 (26)
T 3bkd_A 1 SSDPLVV-AASIMGILHL 17 (26)
T ss_dssp CCCHHHH-HHHHHHHHHH
T ss_pred CCCCCHH-HHHHHHHHHH
T ss_conf 9984013-9999999999
No 4
>>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} (D:)
Probab=10.20 E-value=81 Score=10.74 Aligned_cols=69 Identities=20% Similarity=0.357 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC--------HHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 999998999999999999999999999999984200689988740250--------146677764112899999999999
Q gi|254780228|r 75 SSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSP--------QDYLKIISQAHVPISGFGGTFLMM 146 (346)
Q Consensus 75 p~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~--------~~y~~~l~~~~~~I~~~gG~fLl~ 146 (346)
+||-.+.-.+||..||= ||=.- -+.|+-.+.+.+..| ..|++.+.=+++|+-..+ .|.+
T Consensus 5 ~pKRS~EPi~WgLFgAG-Gm~~A----------l~~Pv~Ili~gillPlG~~~~~a~sy~~i~aFa~s~iG~l~--ll~~ 71 (119)
T 1kf6_D 5 NPKRSDEPVFWGLFGAG-GMWSA----------IIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVF--LFLM 71 (119)
T ss_dssp SCCCCSHHHHHHHHHHH-HHHHH----------HTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHH--HHHH
T ss_pred CCCCCCCCCHHEEECCC-CHHHH----------HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHH
T ss_conf 98877898512124466-02799----------99889999999998623578663589999999860899999--9999
Q ss_pred HHHHHHHCCC
Q ss_conf 9999851155
Q gi|254780228|r 147 VSLTFFFNSQ 156 (346)
Q Consensus 147 ~~lk~~~~~~ 156 (346)
+.+-++..-+
T Consensus 72 i~lplWh~~H 81 (119)
T 1kf6_D 72 IVLPLWCGLH 81 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 5
>>2j7u_A RNA dependent RNA polymerase; nucleoside binding site, flavivirus, high-throughput assay, viral protein; HET: PGE; 1.85A {Dengue virus} PDB: 2j7w_A* (A:126-235)
Probab=6.79 E-value=1.2e+02 Score=9.74 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=14.0
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 466777641128999999999999999851
Q gi|254780228|r 124 DYLKIISQAHVPISGFGGTFLMMVSLTFFF 153 (346)
Q Consensus 124 ~y~~~l~~~~~~I~~~gG~fLl~~~lk~~~ 153 (346)
.+|..=-+.--|-+-+|+-||=+-++-++.
T Consensus 73 eFGkAKGSRaIwYMwLgaRfLEfealGFLN 102 (110)
T 2j7u_A 73 EFGKAKGSRAIWYMWLGARYLEFEALGFLN 102 (110)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 323565331034556556776635201526
No 6
>>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* (A:1-75,A:267-308)
Probab=6.51 E-value=63 Score=11.42 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=6.8
Q ss_pred HHHHHCCCCHHHHHHHHHH
Q ss_conf 9876336530246778999
Q gi|254780228|r 30 GIGWQFTHTLSGTISTVYI 48 (346)
Q Consensus 30 ~i~~~~g~~~~~~~~a~~i 48 (346)
|++.+..+..+++-.+.|+
T Consensus 37 yVgLRLSs~~~~~kEa~YL 55 (117)
T 2bb6_A 37 YVGLRLSSLQAGAKEAHYL 55 (117)
T ss_dssp HHHHHTSSEECTTHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHH
T ss_conf 9986505664546799999
No 7
>>2q04_A Acetoin utilization protein; ZP_00540088.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.33A {Exiguobacterium sibiricum 255-15} (A:)
Probab=6.08 E-value=1.4e+02 Score=9.36 Aligned_cols=17 Identities=12% Similarity=0.004 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHHHCC
Q ss_conf 00124332100011103
Q gi|254780228|r 207 TAAIIIFYGINFLESVL 223 (346)
Q Consensus 207 ~~~~~~~~~~~~~~~~~ 223 (346)
+.|.++|+--+-+.|..
T Consensus 72 IVGYvTf~yPDp~ERWs 88 (211)
T 2q04_A 72 IIGYVTFLYPDPYETWS 88 (211)
T ss_dssp EEEEEEEECCCTTSGGG
T ss_pred EEEEEEEECCCCHHHHC
T ss_conf 99999742897032230
No 8
>>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} (A:1-47,A:108-142)
Probab=5.83 E-value=40 Score=12.66 Aligned_cols=7 Identities=43% Similarity=1.403 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 6699999
Q gi|254780228|r 14 FRWAILV 20 (346)
Q Consensus 14 f~ws~~~ 20 (346)
||||.||
T Consensus 25 frwsvfw 31 (82)
T 1lns_A 25 FRWSVFW 31 (82)
T ss_dssp CCCCTTS
T ss_pred CCCCCCC
T ss_conf 9842230
No 9
>>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; alpha+beta fold, hydrophobic tunnel, hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} (A:178-216)
Probab=5.80 E-value=35 Score=13.03 Aligned_cols=7 Identities=29% Similarity=0.686 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 6989999
Q gi|254780228|r 60 SFENAIL 66 (346)
Q Consensus 60 SvDNafV 66 (346)
|.|||+|
T Consensus 21 SLeNAiV 27 (39)
T 1p42_A 21 SLKNTLV 27 (39)
T ss_dssp CTTTCEE
T ss_pred CCCCCEE
T ss_conf 5234368
No 10
>>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} (A:280-308)
Probab=5.47 E-value=1.5e+02 Score=8.99 Aligned_cols=11 Identities=18% Similarity=0.718 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 87998610024
Q gi|254780228|r 290 QGILNKYKYLE 300 (346)
Q Consensus 290 ~g~l~~f~yLe 300 (346)
+-+.|||+||+
T Consensus 2 a~LvDRYkflD 12 (29)
T 2ond_A 2 ALLVDRYKFXD 12 (29)
T ss_dssp HHHHTTTCBTT
T ss_pred HHHHHHHHCCC
T ss_conf 99999987146
Done!