Query gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 346
No_of_seqs 131 out of 603
Neff 5.8
Searched_HMMs 23785
Date Mon May 23 23:42:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780228.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kih_A Matrix protein 2; S31N, 43.1 12 0.00052 14.9 3.5 36 263-303 5-42 (43)
2 1yew_A Particulate methane mon 16.1 38 0.0016 11.8 3.1 29 7-38 150-178 (382)
3 2ke4_A CDC42-interacting prote 11.0 53 0.0022 10.9 1.1 14 71-84 8-21 (98)
4 3bkd_A Transmembrane domain of 9.2 62 0.0026 10.5 2.5 17 263-280 1-17 (26)
5 1kf6_D Fumarate reductase 13 k 6.8 82 0.0034 9.8 5.0 68 75-155 5-80 (119)
6 2q04_A Acetoin utilization pro 6.3 91 0.0038 9.5 1.2 12 73-84 41-53 (211)
7 2oo9_A E3 ubiquitin-protein li 4.8 1.3E+02 0.0054 8.5 0.2 19 248-266 13-31 (46)
8 1nmr_A Poly(A)-binding protein 4.6 1.4E+02 0.0058 8.4 1.6 17 67-83 11-27 (85)
9 2odb_B Serine/threonine-protei 4.5 1.4E+02 0.0058 8.3 0.4 10 71-80 23-32 (35)
10 3h90_A Ferrous-iron efflux pum 4.5 1.4E+02 0.0058 8.3 2.3 66 80-164 3-68 (283)
No 1
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A*
Probab=43.13 E-value=12 Score=14.88 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q ss_conf 32099999999999999999999999987998--610024789
Q gi|254780228|r 263 TKNFFIIVIGLTIGAIYVRSMTLLMLKQGILN--KYKYLEHGS 303 (346)
Q Consensus 263 T~dpfIV~~g~~~gilglRslt~yFv~~g~l~--~f~yLe~ga 303 (346)
|+||.+ .+++++||+-+- ...+..+.- -|+.+|||+
T Consensus 5 ssdplv-~aasiigilhli----lwildrlffkciyrr~kygl 42 (43)
T 2kih_A 5 SSDPLV-VAANIIGILHLI----LWILDRLFFKSIYRFFEHGL 42 (43)
T ss_dssp -CCHHH-HHHHHHHHHHHH----HHHHHHHHCCCHHHHHHHHC
T ss_pred CCCCHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCC
T ss_conf 886099-999999999999----99999999999999986036
No 2
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str}
Probab=16.09 E-value=38 Score=11.83 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 57799876699999999999999987633653
Q gi|254780228|r 7 YASLIHHFRWAILVTVAGFLCGLGIGWQFTHT 38 (346)
Q Consensus 7 ~~~~~~~f~ws~~~~~lal~f~~~i~~~~g~~ 38 (346)
++-+=+...|.++|.++|+ +|++|+....
T Consensus 150 tyg~~~~~~Wh~~W~~~g~---~Wl~~W~~rp 178 (382)
T 1yew_A 150 NYNEGNTYFWHAFWFAIGV---AWIGYWSRRP 178 (382)
T ss_dssp TTTHHHHHHHHHHHHHHHH---HHHHHHHSSC
T ss_pred CCCCCCEEEEHHHHHHHHH---HHHHHHHHCC
T ss_conf 0254645741249999999---9888887545
No 3
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=10.97 E-value=53 Score=10.91 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=8.2
Q ss_pred HHHCCHHHHHHHHH
Q ss_conf 86299999989999
Q gi|254780228|r 71 LQKMSSIWQKRFLT 84 (346)
Q Consensus 71 f~~fp~~~q~rvL~ 84 (346)
|+++||.+|++.|-
T Consensus 8 fs~lPPeqRrkkL~ 21 (98)
T 2ke4_A 8 FSHLPPEQQRKRLQ 21 (98)
T ss_dssp SSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
T ss_conf 55698699999999
No 4
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral protein, membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=9.22 E-value=62 Score=10.51 Aligned_cols=17 Identities=6% Similarity=0.313 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 320999999999999999
Q gi|254780228|r 263 TKNFFIIVIGLTIGAIYV 280 (346)
Q Consensus 263 T~dpfIV~~g~~~gilgl 280 (346)
|+||.++ +++++|++-+
T Consensus 1 ssdplv~-aasiigilhl 17 (26)
T 3bkd_A 1 SSDPLVV-AASIMGILHL 17 (26)
T ss_dssp CCCHHHH-HHHHHHHHHH
T ss_pred CCCCEEE-HHHHHHHHHH
T ss_conf 9996421-8999999999
No 5
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D*
Probab=6.84 E-value=82 Score=9.76 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC--------CCHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 9999989999999999999999999999999842006899887402--------50146677764112899999999999
Q gi|254780228|r 75 SSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIY--------SPQDYLKIISQAHVPISGFGGTFLMM 146 (346)
Q Consensus 75 p~~~q~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~--------~~~~y~~~l~~~~~~I~~~gG~fLl~ 146 (346)
.||-.+.-.+||..||= ||-.-+. .|.-.+.+.+. +...|++.+.=++.|+-..+ -+.+
T Consensus 5 ~pKRS~EPi~WgLFgAG-G~~~Al~----------~PvlIll~gillPlG~~~~~a~sy~~i~aFa~s~iG~l~--ll~~ 71 (119)
T 1kf6_D 5 NPKRSDEPVFWGLFGAG-GMWSAII----------APVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVF--LFLM 71 (119)
T ss_dssp SCCCCSHHHHHHHHHHH-HHHHHHT----------HHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHH--HHHH
T ss_pred CCCCCCCCCHHEEECCC-CHHHHHH----------HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHH
T ss_conf 98877898513114466-0279999----------889999999998635678653489999999860799999--9999
Q ss_pred HHHHHHHCC
Q ss_conf 999985115
Q gi|254780228|r 147 VSLTFFFNS 155 (346)
Q Consensus 147 ~~lk~~~~~ 155 (346)
+.+-++..-
T Consensus 72 i~lplWh~~ 80 (119)
T 1kf6_D 72 IVLPLWCGL 80 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 6
>2q04_A Acetoin utilization protein; ZP_00540088.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.33A {Exiguobacterium sibiricum 255-15}
Probab=6.30 E-value=91 Score=9.48 Aligned_cols=12 Identities=17% Similarity=0.061 Sum_probs=6.3
Q ss_pred HC-CHHHHHHHHH
Q ss_conf 29-9999989999
Q gi|254780228|r 73 KM-SSIWQKRFLT 84 (346)
Q Consensus 73 ~f-p~~~q~rvL~ 84 (346)
.| ||+.||++|.
T Consensus 41 aFR~p~~Q~~AL~ 53 (211)
T 2q04_A 41 AFRQPAEQHEALV 53 (211)
T ss_dssp SSSCHHHHHHHHH
T ss_pred HCCCCHHHHHHHH
T ss_conf 1289589999999
No 7
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=4.80 E-value=1.3e+02 Score=8.55 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHCCCHH
Q ss_conf 8787541113455213209
Q gi|254780228|r 248 DASLSLDGVISSFAITKNF 266 (346)
Q Consensus 248 D~~FA~DSVpAafAIT~dp 266 (346)
..-+|.|-|.-+..|++|-
T Consensus 13 ~~GYs~~~v~rAL~Ia~Nn 31 (46)
T 2oo9_A 13 SQGYSYQDIQKALVIAQNN 31 (46)
T ss_dssp HTTBCHHHHHHHHHHTTTC
T ss_pred HCCCCHHHHHHHHHHHHCC
T ss_conf 8677699999999998621
No 8
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=4.56 E-value=1.4e+02 Score=8.37 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=11.5
Q ss_pred HHHHHHHCCHHHHHHHH
Q ss_conf 99998629999998999
Q gi|254780228|r 67 NAKNLQKMSSIWQKRFL 83 (346)
Q Consensus 67 ~a~If~~fp~~~q~rvL 83 (346)
.+..+.+.||..||+.|
T Consensus 11 ~~~~la~~~p~eqk~~L 27 (85)
T 1nmr_A 11 LSTVLANLTPEQQKNVL 27 (85)
T ss_dssp THHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHH
T ss_conf 99988348999999998
No 9
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structural genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=4.51 E-value=1.4e+02 Score=8.34 Aligned_cols=10 Identities=20% Similarity=0.627 Sum_probs=0.0
Q ss_pred HHHCCHHHHH
Q ss_conf 8629999998
Q gi|254780228|r 71 LQKMSSIWQK 80 (346)
Q Consensus 71 f~~fp~~~q~ 80 (346)
|..+|++||+
T Consensus 23 f~GLP~eW~~ 32 (35)
T 2odb_B 23 FVGLPPQWQN 32 (35)
T ss_dssp EESCCHHHHH
T ss_pred EECCCHHHHH
T ss_conf 8459989999
No 10
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=4.51 E-value=1.4e+02 Score=8.34 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89999999999999999999999999842006899887402501466777641128999999999999999851155444
Q gi|254780228|r 80 KRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKL 159 (346)
Q Consensus 80 ~rvL~~GIlgAvf~mR~iF~~liv~~~~~~~~~~~~~la~~~~~~y~~~l~~~~~~I~~~gG~fLl~~~lk~~~~~~~e~ 159 (346)
+|.+.+++.+.. ..+.+=++.....-+ .+.+.++.+.+.-....++.+.+.+.-..+.++.
T Consensus 3 ~r~~~~~~~~n~----~l~~~k~~~g~~tgS---------------~allaDa~hs~~D~~~~~i~l~~~~~s~r~~d~~ 63 (283)
T 3h90_A 3 SRAAIAATAMAS----LLLLIKIFAWWYTGS---------------VSILAALVDSLVDIGASLTNLLVVRYSLQPADDN 63 (283)
T ss_dssp CTHHHHHHHHHH----TTHHHHHHSSCSSSS---------------SCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 789999999999----999999999999807---------------9999999999999999999999999826998756
Q ss_pred CCHHH
Q ss_conf 20013
Q gi|254780228|r 160 HWIHF 164 (346)
Q Consensus 160 ~w~~~ 164 (346)
|+.+.
T Consensus 64 ~pyG~ 68 (283)
T 3h90_A 64 HSFGH 68 (283)
T ss_dssp CSSCS
T ss_pred CCCCC
T ss_conf 99840
Done!