RPSBLAST alignment for GI: 254780228 and conserved domain: TIGR03716

>gnl|CDD|163428 TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed. Length = 215
 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 22/101 (21%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 244 LEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEHGS 303
           +E++D + S+D ++++ A++  F+++ +G  IG + +R    + +K  +L ++  LE  +
Sbjct: 102 VELMDIAFSVDSILAAVALSGQFWVVFLGGIIGILIMRFAATIFVK--LLERFPELETAA 159

Query: 304 YYSIFVLSVIMFLQTIVD-----IPEIFTGTSSTILIFLSI 339
           +  I  + V + L+T+       +   F  ++   LIF  +
Sbjct: 160 FLLIGWIGVKLLLETLAHPSIPILHIEFPHSALWKLIFWGV 200