RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780228|ref|YP_003064641.1| hypothetical protein
CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62]
         (346 letters)



>gnl|CDD|32724 COG2899, COG2899, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 346

 Score =  301 bits (773), Expect = 2e-82
 Identities = 139/333 (41%), Positives = 225/333 (67%), Gaps = 5/333 (1%)

Query: 14  FRWAILVTVAGFLCGLGIGWQFTHTLSGTISTVYICIILAVVEISLSFENAILNAKNLQK 73
           F W+ +VTV        +G+++  T+    + ++IC +LAV+EISLSF+NAI+NA  L+ 
Sbjct: 7   FGWSFIVTVIALALAAWLGYEYGGTM---WTALFICAVLAVLEISLSFDNAIVNAAILKD 63

Query: 74  MSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAH 133
           MS  WQKRFLTWGILIAVFGMR++FP++IV + + ++PI AM LA+  P+ Y KII+ AH
Sbjct: 64  MSPFWQKRFLTWGILIAVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAH 123

Query: 134 VPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKIFIVLSIIFGISNI 193
             I+ FGGTFL+MV L FFF+ +  +HW+ ++E  ++ + ++ G+++ + ++++   S +
Sbjct: 124 PQIAAFGGTFLLMVFLDFFFDHERDVHWLKWIERPLARIGRLGGVEVIVAIALLLLFSRL 183

Query: 194 LP-TNEMYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNLFLYLEIIDASLS 252
           L  + +  + + +    ++ +  ++ +  +L +        GK GL  FLYLE++DAS S
Sbjct: 184 LTASADRGTVLIAGLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVLDASFS 243

Query: 253 LDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEHGSYYSIFVLSV 312
            DGVI +FAIT +  II +GL IGA++VRS+T+ ++++G L++Y YLEHG++Y+I  L+V
Sbjct: 244 FDGVIGAFAITTDPVIIALGLGIGAMFVRSITIYLVEKGTLDEYVYLEHGAHYAIGALAV 303

Query: 313 IMFLQT-IVDIPEIFTGTSSTILIFLSIYSSIK 344
           IM L T    IPE+ TG    + I LS++SS++
Sbjct: 304 IMLLSTDRFHIPEVVTGLVGAVFIGLSLWSSVR 336


>gnl|CDD|113115 pfam04332, DUF475, Protein of unknown function (DUF475).  Predicted
           to be an integral membrane protein with multiple
           membrane spans.
          Length = 294

 Score =  247 bits (632), Expect = 4e-66
 Identities = 118/289 (40%), Positives = 186/289 (64%), Gaps = 7/289 (2%)

Query: 61  FENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIY 120
           F+NA++NA  L++MS  WQK FLT GILIAVFGMR+IFP++IV + + ++PIEAM LA+ 
Sbjct: 1   FDNAVVNASILKRMSPFWQKMFLTIGILIAVFGMRLIFPLVIVAVSAGLDPIEAMKLALE 60

Query: 121 SPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKI 180
           +P  Y ++++ AH  I+ FGG FL+MV L FFF+ +  + W+ ++E  ++ + K+  I  
Sbjct: 61  NPDRYEELLTAAHPSIAAFGGMFLLMVFLDFFFDDR-DIKWLKWIERPLARIGKLDAISA 119

Query: 181 FIVLSIIFGISNIL--PTNEMYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTH---GK 235
            IV  ++   +     P  +  + + +    ++ +  ++    +   D S        GK
Sbjct: 120 IIVFVLLLIFAFFFTAPAEQFQTVLFAGLLGLLTYLLVDGFGRLFEPDGSPTGAVRAAGK 179

Query: 236 HGLNLFLYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNK 295
            GL LFLYLE++DAS S DGVI +FAIT +  II +GL IGA++VRS+T+ ++++G L+ 
Sbjct: 180 AGLALFLYLEVLDASFSFDGVIGAFAITNDIVIIALGLGIGAMFVRSLTVYLVRKGTLDD 239

Query: 296 YKYLEHGSYYSIFVLSVIMFLQT-IVDIPEIFTGTSSTILIFLSIYSSI 343
           Y YLEHG++Y+I  L+VIM L    ++IPE+ TG    + I  S++SS+
Sbjct: 240 YVYLEHGAHYAIGALAVIMLLSIRRIEIPEVVTGLVGVVFIGASLWSSV 288


>gnl|CDD|146399 pfam03741, TerC, Integral membrane protein TerC family.  This
           family contains a number of integral membrane proteins
           that also contains the TerC protein. TerC has been
           implicated in resistance to tellurium. This protein may
           be involved in efflux of tellurium ions. The
           tellurite-resistant Escherichia coli strain KL53 was
           found during testing of the group of clinical isolates
           for antibiotics and heavy metal ion resistance.
           Determinant of the tellurite resistance of the strain
           was located on a large conjugative plasmid. Analyses
           showed, the genes terB, terC, terD and terE are
           essential for conservation of the resistance. The
           members of the family contain a number of conserved
           aspartates that could be involved in binding to metal
           ions.
          Length = 184

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 242 LYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEH 301
           + +E+ D   SLD V ++  IT + FI++ G     + +R +  L+ K  ++ ++ YL++
Sbjct: 110 IQIELADLVFSLDSVPAAVGITDDPFIVITGNIFAILGLRFLAFLLAK--LIERFPYLKY 167

Query: 302 GSYYSIFVLSVIMFL 316
            +   +  + V + L
Sbjct: 168 LAAAILGFIGVKLLL 182



 Score = 30.9 bits (71), Expect = 0.52
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 50  IILAVVEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTI 109
           + L ++EISLS +NA + A   +K+    QK+ L WGI+ A+  +RII  ++   ++   
Sbjct: 1   LTLYLLEISLSVDNAFVIALIFRKLPPEQQKKALFWGIIGALV-LRIILILLGSALLELF 59

Query: 110 NPI 112
           + I
Sbjct: 60  DWI 62


>gnl|CDD|31202 COG0861, TerC, Membrane protein TerC, possibly involved in
           tellurium resistance [Inorganic ion transport and
           metabolism].
          Length = 254

 Score = 35.9 bits (83), Expect = 0.015
 Identities = 16/95 (16%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 245 EIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEHGSY 304
           E+ D   SLD VI++  +  + F++V  +    + +R    L+ +  +L ++  L++ + 
Sbjct: 141 ELADLVFSLDSVIAAVGMAGHPFVMVTAVIFAILVMRFAAFLLAR--LLERHPTLKYLAL 198

Query: 305 YSIFVLSVIMFLQTIVDIPEIFTGTSSTILIFLSI 339
             +  + V + L+ +             + +  S+
Sbjct: 199 VILLFIGVKLILEGLAHFGFHIPKGYLYLAVGFSV 233



 Score = 27.8 bits (62), Expect = 4.0
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 50  IILAVVEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTI 109
           + L ++EI L  +NAI+ A    K+    +K+ L  G+  A   +RII    I  +++  
Sbjct: 21  LTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGA-LVLRIILLASISWLLTLT 79

Query: 110 NPI 112
            P+
Sbjct: 80  QPL 82


>gnl|CDD|34750 COG5149, TOA1, Transcription initiation factor IIA, large chain
          [Transcription].
          Length = 293

 Score = 33.2 bits (75), Expect = 0.10
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 43 ISTVYICIILAVV-EISLSFENAILNAKNLQKMSSIWQKRF 82
          +  VY  +IL V+      FE   ++   L+++ ++WQ + 
Sbjct: 6  VGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKL 46


>gnl|CDD|39584 KOG4383, KOG4383, KOG4383, Uncharacterized conserved protein
            [Function unknown].
          Length = 1354

 Score = 27.4 bits (60), Expect = 5.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 305  YSIFVLSVIMFLQTIVDIPEIFTGTSSTILIFLSI 339
             +  +LSVI+FL     +P IF+ +   +L    I
Sbjct: 1095 QAQLLLSVIIFLSCFFFLPIIFSHSDIILLSCFCI 1129


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.329    0.141    0.414 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,178,219
Number of extensions: 236832
Number of successful extensions: 1157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1132
Number of HSP's successfully gapped: 126
Length of query: 346
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 251
Effective length of database: 4,210,882
Effective search space: 1056931382
Effective search space used: 1056931382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.2 bits)