RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62] (346 letters) >gnl|CDD|32724 COG2899, COG2899, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 346 Score = 301 bits (773), Expect = 2e-82 Identities = 139/333 (41%), Positives = 225/333 (67%), Gaps = 5/333 (1%) Query: 14 FRWAILVTVAGFLCGLGIGWQFTHTLSGTISTVYICIILAVVEISLSFENAILNAKNLQK 73 F W+ +VTV +G+++ T+ + ++IC +LAV+EISLSF+NAI+NA L+ Sbjct: 7 FGWSFIVTVIALALAAWLGYEYGGTM---WTALFICAVLAVLEISLSFDNAIVNAAILKD 63 Query: 74 MSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIYSPQDYLKIISQAH 133 MS WQKRFLTWGILIAVFGMR++FP++IV + + ++PI AM LA+ P+ Y KII+ AH Sbjct: 64 MSPFWQKRFLTWGILIAVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAH 123 Query: 134 VPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKIFIVLSIIFGISNI 193 I+ FGGTFL+MV L FFF+ + +HW+ ++E ++ + ++ G+++ + ++++ S + Sbjct: 124 PQIAAFGGTFLLMVFLDFFFDHERDVHWLKWIERPLARIGRLGGVEVIVAIALLLLFSRL 183 Query: 194 LP-TNEMYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNLFLYLEIIDASLS 252 L + + + + + ++ + ++ + +L + GK GL FLYLE++DAS S Sbjct: 184 LTASADRGTVLIAGLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVLDASFS 243 Query: 253 LDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEHGSYYSIFVLSV 312 DGVI +FAIT + II +GL IGA++VRS+T+ ++++G L++Y YLEHG++Y+I L+V Sbjct: 244 FDGVIGAFAITTDPVIIALGLGIGAMFVRSITIYLVEKGTLDEYVYLEHGAHYAIGALAV 303 Query: 313 IMFLQT-IVDIPEIFTGTSSTILIFLSIYSSIK 344 IM L T IPE+ TG + I LS++SS++ Sbjct: 304 IMLLSTDRFHIPEVVTGLVGAVFIGLSLWSSVR 336 >gnl|CDD|113115 pfam04332, DUF475, Protein of unknown function (DUF475). Predicted to be an integral membrane protein with multiple membrane spans. Length = 294 Score = 247 bits (632), Expect = 4e-66 Identities = 118/289 (40%), Positives = 186/289 (64%), Gaps = 7/289 (2%) Query: 61 FENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIY 120 F+NA++NA L++MS WQK FLT GILIAVFGMR+IFP++IV + + ++PIEAM LA+ Sbjct: 1 FDNAVVNASILKRMSPFWQKMFLTIGILIAVFGMRLIFPLVIVAVSAGLDPIEAMKLALE 60 Query: 121 SPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKI 180 +P Y ++++ AH I+ FGG FL+MV L FFF+ + + W+ ++E ++ + K+ I Sbjct: 61 NPDRYEELLTAAHPSIAAFGGMFLLMVFLDFFFDDR-DIKWLKWIERPLARIGKLDAISA 119 Query: 181 FIVLSIIFGISNIL--PTNEMYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTH---GK 235 IV ++ + P + + + + ++ + ++ + D S GK Sbjct: 120 IIVFVLLLIFAFFFTAPAEQFQTVLFAGLLGLLTYLLVDGFGRLFEPDGSPTGAVRAAGK 179 Query: 236 HGLNLFLYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNK 295 GL LFLYLE++DAS S DGVI +FAIT + II +GL IGA++VRS+T+ ++++G L+ Sbjct: 180 AGLALFLYLEVLDASFSFDGVIGAFAITNDIVIIALGLGIGAMFVRSLTVYLVRKGTLDD 239 Query: 296 YKYLEHGSYYSIFVLSVIMFLQT-IVDIPEIFTGTSSTILIFLSIYSSI 343 Y YLEHG++Y+I L+VIM L ++IPE+ TG + I S++SS+ Sbjct: 240 YVYLEHGAHYAIGALAVIMLLSIRRIEIPEVVTGLVGVVFIGASLWSSV 288 >gnl|CDD|146399 pfam03741, TerC, Integral membrane protein TerC family. This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions. Length = 184 Score = 43.2 bits (103), Expect = 1e-04 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 242 LYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEH 301 + +E+ D SLD V ++ IT + FI++ G + +R + L+ K ++ ++ YL++ Sbjct: 110 IQIELADLVFSLDSVPAAVGITDDPFIVITGNIFAILGLRFLAFLLAK--LIERFPYLKY 167 Query: 302 GSYYSIFVLSVIMFL 316 + + + V + L Sbjct: 168 LAAAILGFIGVKLLL 182 Score = 30.9 bits (71), Expect = 0.52 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Query: 50 IILAVVEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTI 109 + L ++EISLS +NA + A +K+ QK+ L WGI+ A+ +RII ++ ++ Sbjct: 1 LTLYLLEISLSVDNAFVIALIFRKLPPEQQKKALFWGIIGALV-LRIILILLGSALLELF 59 Query: 110 NPI 112 + I Sbjct: 60 DWI 62 >gnl|CDD|31202 COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]. Length = 254 Score = 35.9 bits (83), Expect = 0.015 Identities = 16/95 (16%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 245 EIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLEHGSY 304 E+ D SLD VI++ + + F++V + + +R L+ + +L ++ L++ + Sbjct: 141 ELADLVFSLDSVIAAVGMAGHPFVMVTAVIFAILVMRFAAFLLAR--LLERHPTLKYLAL 198 Query: 305 YSIFVLSVIMFLQTIVDIPEIFTGTSSTILIFLSI 339 + + V + L+ + + + S+ Sbjct: 199 VILLFIGVKLILEGLAHFGFHIPKGYLYLAVGFSV 233 Score = 27.8 bits (62), Expect = 4.0 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 50 IILAVVEISLSFENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTI 109 + L ++EI L +NAI+ A K+ +K+ L G+ A +RII I +++ Sbjct: 21 LTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGA-LVLRIILLASISWLLTLT 79 Query: 110 NPI 112 P+ Sbjct: 80 QPL 82 >gnl|CDD|34750 COG5149, TOA1, Transcription initiation factor IIA, large chain [Transcription]. Length = 293 Score = 33.2 bits (75), Expect = 0.10 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 43 ISTVYICIILAVV-EISLSFENAILNAKNLQKMSSIWQKRF 82 + VY +IL V+ FE ++ L+++ ++WQ + Sbjct: 6 VGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKL 46 >gnl|CDD|39584 KOG4383, KOG4383, KOG4383, Uncharacterized conserved protein [Function unknown]. Length = 1354 Score = 27.4 bits (60), Expect = 5.8 Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 305 YSIFVLSVIMFLQTIVDIPEIFTGTSSTILIFLSI 339 + +LSVI+FL +P IF+ + +L I Sbjct: 1095 QAQLLLSVIIFLSCFFFLPIIFSHSDIILLSCFCI 1129 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.329 0.141 0.414 Gapped Lambda K H 0.267 0.0696 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,178,219 Number of extensions: 236832 Number of successful extensions: 1157 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1132 Number of HSP's successfully gapped: 126 Length of query: 346 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 251 Effective length of database: 4,210,882 Effective search space: 1056931382 Effective search space used: 1056931382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 58 (26.2 bits)