BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780228|ref|YP_003064641.1| hypothetical protein
CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62]
         (346 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 346

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/346 (100%), Positives = 346/346 (100%)

Query: 1   MKSNSLYASLIHHFRWAILVTVAGFLCGLGIGWQFTHTLSGTISTVYICIILAVVEISLS 60
           MKSNSLYASLIHHFRWAILVTVAGFLCGLGIGWQFTHTLSGTISTVYICIILAVVEISLS
Sbjct: 1   MKSNSLYASLIHHFRWAILVTVAGFLCGLGIGWQFTHTLSGTISTVYICIILAVVEISLS 60

Query: 61  FENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIY 120
           FENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIY
Sbjct: 61  FENAILNAKNLQKMSSIWQKRFLTWGILIAVFGMRIIFPIMIVCIVSTINPIEAMNLAIY 120

Query: 121 SPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKI 180
           SPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKI
Sbjct: 121 SPQDYLKIISQAHVPISGFGGTFLMMVSLTFFFNSQNKLHWIHFLEIAMSHLSKIKGIKI 180

Query: 181 FIVLSIIFGISNILPTNEMYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNL 240
           FIVLSIIFGISNILPTNEMYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNL
Sbjct: 181 FIVLSIIFGISNILPTNEMYSFVSSSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNL 240

Query: 241 FLYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLE 300
           FLYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLE
Sbjct: 241 FLYLEIIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLKQGILNKYKYLE 300

Query: 301 HGSYYSIFVLSVIMFLQTIVDIPEIFTGTSSTILIFLSIYSSIKNK 346
           HGSYYSIFVLSVIMFLQTIVDIPEIFTGTSSTILIFLSIYSSIKNK
Sbjct: 301 HGSYYSIFVLSVIMFLQTIVDIPEIFTGTSSTILIFLSIYSSIKNK 346


>gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 523

 Score = 25.4 bits (54), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 10/44 (22%), Positives = 28/44 (63%)

Query: 246 IIDASLSLDGVISSFAITKNFFIIVIGLTIGAIYVRSMTLLMLK 289
           I+D   SLD V+++  + ++F ++ I + + A+ + +++  M++
Sbjct: 138 ILDLVFSLDSVVTAIGMVQHFSVMAIAVAVSALMMMAVSQPMIR 181


>gi|254780278|ref|YP_003064691.1| phosphoglyceromutase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 212

 Score = 23.5 bits (49), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 311 SVIMFLQ--TIVDIPEIFTGTSSTILIFLSIYSSIKNK 346
           S+IM L+  T+ DIP++  GT    +  L   +SI +K
Sbjct: 164 SLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201


>gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 430

 Score = 23.1 bits (48), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 34  QFTHTLSGTISTVYICIILAVVEISLSFENAI 65
           +FTHTL+G+   V  C+I A++E  L+ + ++
Sbjct: 377 KFTHTLNGSGVAVGRCLI-AILENYLNADGSV 407


>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 947

 Score = 23.1 bits (48), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 205 SSTAAIIIFYGINFLESVLSSDSSNNVTHGKHGLNLF 241
           +  A I +    +FLE+++ SD + N+     GL+ F
Sbjct: 320 TPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCF 356


>gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 384

 Score = 22.7 bits (47), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 225 SDSSNNVTHGKHGLNLFLYLEIIDASLSLDGV 256
           SD S  V H  +     +Y EI+D  +S DG 
Sbjct: 54  SDISQEVRHLLNQHFSIIYPEIVDEKISCDGT 85


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.141    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,008
Number of Sequences: 1233
Number of extensions: 8658
Number of successful extensions: 53
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 17
length of query: 346
length of database: 328,796
effective HSP length: 75
effective length of query: 271
effective length of database: 236,321
effective search space: 64042991
effective search space used: 64042991
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 39 (19.6 bits)