HHsearch alignment for GI: 254780229 and conserved domain: COG1201
>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=96.01 E-value=0.024 Score=39.40 Aligned_cols=62 Identities=27% Similarity=0.448 Sum_probs=43.7
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHH-HHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf 8999998514895599428787703899-9999999967-------982899601058999999864435
Q gi|254780229|r 409 QHSAVIDVINGKNLIIEGPPGTGKSQTI-TNIIAAAMLH-------GKKILFCAQKMAAIEVVRHRLEKA 470 (1775)
Q Consensus 409 Q~~av~~~~~g~~~vi~GPPGTGKSQTI-aNlIa~~la~-------Gk~VLfVaeK~aALdVV~~RL~~~ 470 (1775)
T Consensus 27 Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 27 QRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 9999999858984699868999737999999999998606888888569999570788878999999999