HHsearch alignment for GI: 254780229 and conserved domain: COG1204
>COG1204 Superfamily II helicase [General function prediction only].
Probab=95.48 E-value=0.097 Score=33.08 Aligned_cols=78 Identities=23% Similarity=0.287 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHHH-HHHHHHC-CCEEEEEECCHHHHHHHHHHHH-HCCCCCEEEEC
Q ss_conf 7734689999985148-95599428787703899999-9999967-9828996010589999998644-35844136540
Q gi|254780229|r 404 DSDSSQHSAVIDVING-KNLIIEGPPGTGKSQTITNI-IAAAMLH-GKKILFCAQKMAAIEVVRHRLE-KAGLGEFCLEL 479 (1775)
Q Consensus 404 ~aDsSQ~~av~~~~~g-~~~vi~GPPGTGKSQTIaNl-Ia~~la~-Gk~VLfVaeK~aALdVV~~RL~-~~gLg~~cleL 479 (1775)
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKT-lIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~ 109 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKT-LIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGIS 109 (766)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCHH-HHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 7557899874111257986799767888669-999999999998559838999075999999999866688659779996
Q ss_pred CCC
Q ss_conf 266
Q gi|254780229|r 480 HSH 482 (1775)
Q Consensus 480 Hs~ 482 (1775)
T Consensus 110 TgD 112 (766)
T COG1204 110 TGD 112 (766)
T ss_pred CCC
T ss_conf 488