HHsearch alignment for GI: 254780229 and conserved domain: COG1204

>COG1204 Superfamily II helicase [General function prediction only].
Probab=95.48  E-value=0.097  Score=33.08  Aligned_cols=78  Identities=23%  Similarity=0.287  Sum_probs=54.3

Q ss_pred             CCCHHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHHH-HHHHHHC-CCEEEEEECCHHHHHHHHHHHH-HCCCCCEEEEC
Q ss_conf             7734689999985148-95599428787703899999-9999967-9828996010589999998644-35844136540
Q gi|254780229|r  404 DSDSSQHSAVIDVING-KNLIIEGPPGTGKSQTITNI-IAAAMLH-GKKILFCAQKMAAIEVVRHRLE-KAGLGEFCLEL  479 (1775)
Q Consensus       404 ~aDsSQ~~av~~~~~g-~~~vi~GPPGTGKSQTIaNl-Ia~~la~-Gk~VLfVaeK~aALdVV~~RL~-~~gLg~~cleL  479 (1775)
T Consensus        31 el~~~qq~av~~~~~~~~N~li~aPTgsGKT-lIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~  109 (766)
T COG1204          31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKT-LIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGIS  109 (766)
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCCCCHH-HHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             7557899874111257986799767888669-999999999998559838999075999999999866688659779996


Q ss_pred             CCC
Q ss_conf             266
Q gi|254780229|r  480 HSH  482 (1775)
Q Consensus       480 Hs~  482 (1775)
T Consensus       110 TgD  112 (766)
T COG1204         110 TGD  112 (766)
T ss_pred             CCC
T ss_conf             488