HHsearch alignment for GI: 254780229 and conserved domain: COG1222

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].

Probab=95.45  E-value=0.011  Score=43.05  Aligned_cols=46  Identities=28%  Similarity=0.556  Sum_probs=27.0

Q ss_pred             HHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Q ss_conf             85148955994287877038999999999967982899601058999999864
Q gi|254780229|r  415 DVINGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRL  467 (1775)
Q Consensus       415 ~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aALdVV~~RL  467 (1775)
T Consensus       181 GI~PPKGVLLYGPPGTGKT-----LLAkAVA~~T~AtF--IrvvgSElVqKYi  226 (406)
T COG1222         181 GIDPPKGVLLYGPPGTGKT-----LLAKAVANQTDATF--IRVVGSELVQKYI  226 (406)
T ss_pred             CCCCCCCEEEECCCCCCHH-----HHHHHHHHCCCCEE--EEECCHHHHHHHH
T ss_conf             9999971276689997588-----99999872058669--9942199999983