HHsearch alignment for GI: 254780229 and conserved domain: COG1224
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription].
Probab=96.24 E-value=0.0092 Score=43.74 Aligned_cols=59 Identities=37% Similarity=0.633 Sum_probs=41.4
Q ss_pred HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH-HHH
Q ss_conf 1489559942878770389999999999679828996010589999998644358441365402661108999999-999
Q gi|254780229|r 417 INGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAIEVVRHRLEKAGLGEFCLELHSHKVHKRAILDD-LRK 495 (1775)
Q Consensus 417 ~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aALdVV~~RL~~~gLg~~cleLHs~ka~k~~vl~~-L~~ 495 (1775)
T Consensus 63 ~aGrgiLi~GppgTGKT-AlA~gIa~eL--G~dvPF~~is-------------------gsEiYS~E~kKTE~L~qa~Rr 120 (450)
T COG1224 63 MAGRGILIVGPPGTGKT-ALAMGIAREL--GEDVPFVAIS-------------------GSEIYSLEVKKTEALTQALRR 120 (450)
T ss_pred CCCCEEEEECCCCCCHH-HHHHHHHHHH--CCCCCCEEEC-------------------CCEEEEECCCHHHHHHHHHHH
T ss_conf 66617999789997688-9999999985--8999821501-------------------332233100088999999998
Q ss_pred HH
Q ss_conf 98
Q gi|254780229|r 496 RI 497 (1775)
Q Consensus 496 ~l 497 (1775)
T Consensus 121 aI 122 (450)
T COG1224 121 AI 122 (450)
T ss_pred HH
T ss_conf 64