HHsearch alignment for GI: 254780229 and conserved domain: COG1643
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=95.59 E-value=0.099 Score=32.99 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHHHHHCC--CCCEEEE
Q ss_conf 67734689999985148955994287877038999999999967982899601--0589999998644358--4413654
Q gi|254780229|r 403 DDSDSSQHSAVIDVINGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQ--KMAAIEVVRHRLEKAG--LGEFCLE 478 (1775)
Q Consensus 403 ~~aDsSQ~~av~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVae--K~aALdVV~~RL~~~g--Lg~~cle 478 (1775)
T Consensus 49 LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY 128 (845)
T COG1643 49 LPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGY 128 (845)
T ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 98188899999999869789986799887587889999960016687599658438999999999999838986765437