HHsearch alignment for GI: 254780229 and conserved domain: COG3598
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=94.86 E-value=0.092 Score=33.31 Aligned_cols=59 Identities=25% Similarity=0.390 Sum_probs=39.9
Q ss_pred HHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC-----------EEEEEEC---CHHHHHHHHHHHHHCCCCCE
Q ss_conf 514895599428787703899999999996798-----------2899601---05899999986443584413
Q gi|254780229|r 416 VINGKNLIIEGPPGTGKSQTITNIIAAAMLHGK-----------KILFCAQ---KMAAIEVVRHRLEKAGLGEF 475 (1775)
Q Consensus 416 ~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk-----------~VLfVae---K~aALdVV~~RL~~~gLg~~ 475 (1775)
T Consensus 86 fr~g~~~~~~gdsg~GKt-tllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPa 158 (402)
T COG3598 86 FRKGYVSILYGDSGVGKT-TLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPA 158 (402)
T ss_pred HHCCEEEEEECCCCCCHH-HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 651705898448862376-8999999999864777453355888079998226868899999999987099857