HHsearch alignment for GI: 254780229 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=95.55 E-value=0.027 Score=38.85 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=36.1
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHH-HHHCCCEEEEEECCHHH-H-HHHHHHHHHCCCCCEEEE
Q ss_conf 895599428787703899999999-99679828996010589-9-999986443584413654
Q gi|254780229|r 419 GKNLIIEGPPGTGKSQTITNIIAA-AMLHGKKILFCAQKMAA-I-EVVRHRLEKAGLGEFCLE 478 (1775)
Q Consensus 419 g~~~vi~GPPGTGKSQTIaNlIa~-~la~Gk~VLfVaeK~aA-L-dVV~~RL~~~gLg~~cle 478 (1775)
T Consensus 39 ~~~l~i~G~~gsGKTH-LLqa~~~~~~~~~~~~~yi~~~~~~~~~~~~l~~l~~--~d~l~iD 98 (229)
T PRK06893 39 QPFFYIWGGKSSGKSH-LLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQ--QDLVCLD 98 (229)
T ss_pred CCEEEEECCCCCCHHH-HHHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHH--CCEEEEE
T ss_conf 9879998999998899-9999999999718985999737756406999987654--7979996