HHsearch alignment for GI: 254780229 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=97.52 E-value=0.00018 Score=61.45 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH-HHHCCCEEEEEE
Q ss_conf 8999998514895599428787703899999999-996798289960
Q gi|254780229|r 409 QHSAVIDVINGKNLIIEGPPGTGKSQTITNIIAA-AMLHGKKILFCA 454 (1775)
Q Consensus 409 Q~~av~~~~~g~~~vi~GPPGTGKSQTIaNlIa~-~la~Gk~VLfVa 454 (1775)
T Consensus 91 ~La~~~fi~~~~Nvil~G~~GtGKT-hLA~Alg~~A~~~G~~v~f~~ 136 (258)
T PRK09183 91 SLRSLSFIERNENIVLLGPSGVGKT-HLAIALGYEAVRAGIKVRFTT 136 (258)
T ss_pred HHHCCCHHHCCCCEEEECCCCCCHH-HHHHHHHHHHHHCCCEEEEEE
T ss_conf 8825816655886799899998689-999999999998799399978