HHsearch alignment for GI: 254780229 and conserved domain: PRK11054
>PRK11054 helD DNA helicase IV; Provisional.
Probab=97.63 E-value=0.00024 Score=60.17 Aligned_cols=64 Identities=25% Similarity=0.370 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHHHH
Q ss_conf 773468999998514895599428787703899999999996798----289960105899999986443
Q gi|254780229|r 404 DSDSSQHSAVIDVINGKNLIIEGPPGTGKSQTITNIIAAAMLHGK----KILFCAQKMAAIEVVRHRLEK 469 (1775)
Q Consensus 404 ~aDsSQ~~av~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk----~VLfVaeK~aALdVV~~RL~~ 469 (1775)
T Consensus 196 PLn~~Qr~Avi~-~ed~~LVLAGA-GSGKT~vLt~RiayLI~~g~~~P~~ILaLTFT~kAA~EMreRl~~ 263 (684)
T PRK11054 196 PLNPSQARAVVN-GEDSLLVLAGA-GSGKTSVLVARAGWLLARGQAQPEQILLLAFGRKAAEEMDERIRE 263 (684)
T ss_pred CCCHHHHHHEEE-CCCCEEEEECC-CCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCHHHHHHHHHHHHH
T ss_conf 999899957274-79964898338-997077999999999975999866778686349999999999997