HHsearch alignment for GI: 254780229 and conserved domain: PRK11192
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=95.68 E-value=0.078 Score=34.04 Aligned_cols=34 Identities=15% Similarity=0.429 Sum_probs=25.2
Q ss_pred CCEEEECHHHHHHHCCCCCC---CCCEEEECCHHHCC
Q ss_conf 67899257799872585225---41078860632369
Q gi|254780229|r 1341 KPCFMMSPMSVANYLEPKDV---KFDLVIMDESSQIK 1374 (1775)
Q Consensus 1341 ~P~~~msp~sva~~l~~~~~---~FD~VI~DEASQ~~ 1374 (1775)
T Consensus 126 ~dIlV~TPgRL~~~l~~~~~~l~~l~~lVlDEAD~ml 162 (417)
T PRK11192 126 QDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 162 (417)
T ss_pred CCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCC
T ss_conf 9989978607777886367010457489996755211