HHsearch alignment for GI: 254780229 and conserved domain: PRK11192

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=95.68  E-value=0.078  Score=34.04  Aligned_cols=34  Identities=15%  Similarity=0.429  Sum_probs=25.2

Q ss_pred             CCEEEECHHHHHHHCCCCCC---CCCEEEECCHHHCC
Q ss_conf             67899257799872585225---41078860632369
Q gi|254780229|r 1341 KPCFMMSPMSVANYLEPKDV---KFDLVIMDESSQIK 1374 (1775)
Q Consensus      1341 ~P~~~msp~sva~~l~~~~~---~FD~VI~DEASQ~~ 1374 (1775)
T Consensus       126 ~dIlV~TPgRL~~~l~~~~~~l~~l~~lVlDEAD~ml  162 (417)
T PRK11192        126 QDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML  162 (417)
T ss_pred             CCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCC
T ss_conf             9989978607777886367010457489996755211