HHsearch alignment for GI: 254780229 and conserved domain: PRK11331

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.

Probab=96.97  E-value=0.0016  Score=51.76  Aligned_cols=49  Identities=24%  Similarity=0.453  Sum_probs=35.8

Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC---EEEEE
Q ss_conf             66773468999998514895599428787703899999999996798---28996
Q gi|254780229|r  402 IDDSDSSQHSAVIDVINGKNLIIEGPPGTGKSQTITNIIAAAMLHGK---KILFC  453 (1775)
Q Consensus       402 ~~~aDsSQ~~av~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk---~VLfV  453 (1775)
T Consensus       179 ~~~~~i~~~--~~sLktKknvIL~G~pGtGKT-~lAk~lA~~l~g~~~~~rv~~V  230 (459)
T PRK11331        179 IPETTIETI--LKRLTIKKNIILQGPPGVGKT-FVARRLAYLLTGEKAPQRVNMV  230 (459)
T ss_pred             CCCHHHHHH--HHHHCCCCCEEEECCCCCCHH-HHHHHHHHHHHCCCCCCCEEEE
T ss_conf             561359999--998545882796589998878-9999999997078877846899