HHsearch alignment for GI: 254780229 and conserved domain: PRK11664
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=96.42 E-value=0.016 Score=41.37 Aligned_cols=62 Identities=19% Similarity=0.366 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 734689999985148955994287877038999-999999967982899601058999999864
Q gi|254780229|r 405 SDSSQHSAVIDVINGKNLIIEGPPGTGKSQTIT-NIIAAAMLHGKKILFCAQKMAAIEVVRHRL 467 (1775)
Q Consensus 405 aDsSQ~~av~~~~~g~~~vi~GPPGTGKSQTIa-NlIa~~la~Gk~VLfVaeK~aALdVV~~RL 467 (1775)
T Consensus 6 i~~~~~~i~~~l~~~~~~vl~a~tGsGKtTqvP~~ll~~~~~~g-~I~~~qPRR~AA~s~A~Rv 68 (812)
T PRK11664 6 VAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQQGGING-KIIMLEPRRLAARNVAQRL 68 (812)
T ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCC-CEEEECCHHHHHHHHHHHH
T ss_conf 47899999999997997999908999989999999996468899-3899388399999999999