HHsearch alignment for GI: 254780229 and conserved domain: PRK11773
>PRK11773 uvrD DNA-dependent helicase II; Provisional.
Probab=97.25 E-value=0.00055 Score=56.54 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=42.9
Q ss_pred CCCEEECCHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC---HHHHH-HHHHHHHCCEEEEEECC
Q ss_conf 8985854256808666788999966507888876200114777656---24689-99998321426988703
Q gi|254780229|r 1553 ADPFFIKNLENVQGDERDRIFISFTYGPHEPGGRVFQRFGPINSDI---GWRRL-NVLFTRSRRRIEVFSTM 1620 (1775)
Q Consensus 1553 ~e~~fvknle~vQGdERDvI~~S~~yg~~~~~g~~~~~fGpln~~g---g~rRl-NVa~sRAr~~~~v~~s~ 1620 (1775)
T Consensus 551 ~d~V~LmTiH~AKGLEFp~Vfl~---gl~--eg~fP~~-~s~~~~~~leEERRLfYVaiTRAk~~L~ls~~~ 616 (722)
T PRK11773 551 EDAVQLMTLHSAKGLEFPLVFLV---GME--EGLFPSQ-MSLEEGGRLEEERRLAYVGITRAMQKLTLTYAE 616 (722)
T ss_pred CCEEEEEEEECCCCCCCCEEEEE---CCC--CCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECC
T ss_conf 88289996120268667768980---661--7988863-346897510899999999898874524885512