HHsearch alignment for GI: 254780229 and conserved domain: PRK11776
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=95.44 E-value=0.19 Score=30.15 Aligned_cols=33 Identities=12% Similarity=0.338 Sum_probs=24.2
Q ss_pred CCEEEECHHHHHHHCCCCCCC---CCEEEECCHHHC
Q ss_conf 678992577998725852254---107886063236
Q gi|254780229|r 1341 KPCFMMSPMSVANYLEPKDVK---FDLVIMDESSQI 1373 (1775)
Q Consensus 1341 ~P~~~msp~sva~~l~~~~~~---FD~VI~DEASQ~ 1373 (1775)
T Consensus 124 ~~IvV~TPGRl~d~l~~~~l~l~~v~~lVlDEAD~m 159 (459)
T PRK11776 124 AHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRM 159 (459)
T ss_pred CCEEEECCHHHHHHHHCCCCCCCCEEEEEEECCHHH
T ss_conf 999998958999887516632231038997062454