HHsearch alignment for GI: 254780229 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=95.91 E-value=0.013 Score=42.29 Aligned_cols=55 Identities=22% Similarity=0.389 Sum_probs=38.2
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHCC-C---EEEEEE---CCHHHHHHHHHHHHHCCC
Q ss_conf 489559942878770389999999999679-8---289960---105899999986443584
Q gi|254780229|r 418 NGKNLIIEGPPGTGKSQTITNIIAAAMLHG-K---KILFCA---QKMAAIEVVRHRLEKAGL 472 (1775)
Q Consensus 418 ~g~~~vi~GPPGTGKSQTIaNlIa~~la~G-k---~VLfVa---eK~aALdVV~~RL~~~gL 472 (1775)
T Consensus 173 k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~v 234 (388)
T PRK12723 173 KKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGI 234 (388)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 76289998998875787999999999986267677379998078758899999999999788