HHsearch alignment for GI: 254780229 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.36 E-value=0.0067 Score=45.15 Aligned_cols=53 Identities=28% Similarity=0.533 Sum_probs=39.1
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHH-HCCCEEEEEE---CCHHHHHHHHHHHHHCCC
Q ss_conf 9559942878770389999999999-6798289960---105899999986443584
Q gi|254780229|r 420 KNLIIEGPPGTGKSQTITNIIAAAM-LHGKKILFCA---QKMAAIEVVRHRLEKAGL 472 (1775)
Q Consensus 420 ~~~vi~GPPGTGKSQTIaNlIa~~l-a~Gk~VLfVa---eK~aALdVV~~RL~~~gL 472 (1775)
T Consensus 224 kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~i 280 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGM 280 (432)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 299998999988899999999999997499279995266537799999999998599