HHsearch alignment for GI: 254780229 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.69 E-value=0.0024 Score=49.75 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=46.0
Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHHHHHCCC
Q ss_conf 9985148955994287877038999999999967982899601---05899999986443584
Q gi|254780229|r 413 VIDVINGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQ---KMAAIEVVRHRLEKAGL 472 (1775)
Q Consensus 413 v~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVae---K~aALdVV~~RL~~~gL 472 (1775)
T Consensus 200 ~~~l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgV 262 (407)
T PRK12726 200 SFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV 262 (407)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 023036908999899989789999999999997799179997066778899999999999796