HHsearch alignment for GI: 254780229 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=96.21 E-value=0.0061 Score=45.60 Aligned_cols=45 Identities=18% Similarity=0.440 Sum_probs=38.1
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHH
Q ss_conf 98514895599428787703899999999996798289960105899
Q gi|254780229|r 414 IDVINGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAI 460 (1775)
Q Consensus 414 ~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aAL 460 (1775)
T Consensus 157 ~aV~~r~NIlIsGgTGSGKT-TllnALl~~IP~~eRI-vtIEDt~EL 201 (343)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKT-TMSKTLISAIPPQERL-ITIEDTLEL 201 (343)
T ss_pred HHHHCCCCEEEECCCCCCHH-HHHHHHHHCCCCCCCE-EEECCCCCC
T ss_conf 99976988999888986199-9999999628965527-996115002