HHsearch alignment for GI: 254780229 and conserved domain: PRK13851

>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=96.21  E-value=0.0061  Score=45.60  Aligned_cols=45  Identities=18%  Similarity=0.440  Sum_probs=38.1

Q ss_pred             HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHH
Q ss_conf             98514895599428787703899999999996798289960105899
Q gi|254780229|r  414 IDVINGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQKMAAI  460 (1775)
Q Consensus       414 ~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVaeK~aAL  460 (1775)
T Consensus       157 ~aV~~r~NIlIsGgTGSGKT-TllnALl~~IP~~eRI-vtIEDt~EL  201 (343)
T PRK13851        157 ACVVGRLTMLLCGPTGSGKT-TMSKTLISAIPPQERL-ITIEDTLEL  201 (343)
T ss_pred             HHHHCCCCEEEECCCCCCHH-HHHHHHHHCCCCCCCE-EEECCCCCC
T ss_conf             99976988999888986199-9999999628965527-996115002