HHsearch alignment for GI: 254780229 and conserved domain: TIGR00376
>TIGR00376 TIGR00376 DNA helicase, putative; InterPro: IPR004483 Eukaryotic members of this family have been characterised as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterised as helicases.; GO: 0003677 DNA binding, 0005524 ATP binding.
Probab=99.57 E-value=1.2e-13 Score=157.36 Aligned_cols=251 Identities=25% Similarity=0.399 Sum_probs=182.4
Q ss_pred CCCCCCEEEECCHHHCCHHHHHHHHHHCC----EEEEEECCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHC
Q ss_conf 22541078860632369899889886118----28996077866862011000134444320110144000799999755
Q gi|254780229|r 1358 KDVKFDLVIMDESSQIKPEDALGVIARGK----QIVVVGDPKQLPPTRFFDHDNDQEDYDEEVAAVSQTESILDALLPLF 1433 (1775)
Q Consensus 1358 ~~~~FD~VI~DEASQ~~~~~al~al~rak----qvvvvGD~kQlpPt~ff~~~~~~~~~~~~~~~~~~~eSild~~~~~~ 1433 (1775)
T Consensus 411 ~g~~~d~~~~d~~~~~~~p~~~~p~~~~~~~~~~~~~~gd~~~lpp~~~~~~~~--------~~~~~l~~~l~~~~~~~~ 482 (709)
T TIGR00376 411 DGWYFDVLVIDEASQALEPSCWIPLLKARNQFHKLILAGDHKQLPPTVLSEDDK--------NALEELELTLFERLIKLY 482 (709)
T ss_pred CCCHHEEEEECCHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCHHCCHHH--------HHHHHHHHHHHHHHHHHC
T ss_conf 021000001000012321145544341310121100205643367400011045--------676666788999999851
Q ss_pred CCC----EECCCCCCCCHHHHHHHHHHCCCCEEEECCC---------------C-CC--CCCCCCEEEEECCCCC--C--
Q ss_conf 875----2053055799789999985036980476468---------------7-76--6666884899728972--1--
Q gi|254780229|r 1434 SMR----RLQWHYRSLNENLIACSNYYFYDNSLIVFPS---------------P-YT--SVDRYGVGFTHVKNGV--V-- 1487 (1775)
Q Consensus 1434 p~~----~L~~HyRs~~e~lI~fSN~~fY~~~L~~~ps---------------p-~~--~~~~~~v~~~~v~~g~--~-- 1487 (1775)
T Consensus 483 p~~~~~~~l~~~~~-~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~ 561 (709)
T TIGR00376 483 PERDVSRLLNVQYR-LNEKILEFPSREFYNGKLLAHESVANILLRDLPKVEATPDLEDDLDDGIPLLFIDTSGCELRWEG 561 (709)
T ss_pred CCCHHHHHHHHHHH-HHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCCCHHH
T ss_conf 64002455343434-21467640101220452011035667777653200011023443057664578632456520000
Q ss_pred -----C-CCCCHHHHHHHHHHHHHHHHC-CCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEECC
Q ss_conf -----7-888989999999999999531-857718998199899999999999993129768999764114789858542
Q gi|254780229|r 1488 -----V-DQGNPEEARVIALAVKDHALR-YPEESLGVIAMNAKQRDLIESTINKLCRKDSEVEKAISKLRMHADPFFIKN 1560 (1775)
Q Consensus 1488 -----~-~~~N~~EA~~vv~~v~~~~~~-~~~~siGVvt~~~~Q~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~fvkn 1560 (1775)
T Consensus 562 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 626 (709)
T TIGR00376 562 KEKDSTGSKYNPGEAELVLEHVESLLKFGVPPNDIGVITPYDDQVDLLRKLLHDELK---------------LIDLEVSS 626 (709)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCEEECCCHHHHHHHHHHHHHHHH---------------HCCCEEEC
T ss_conf 011024543443678999999999986078700310203531578999987655553---------------02320001
Q ss_pred HHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHCCHHHCCCHHHHHHHH
Q ss_conf 56808666788999966507888876200114777656246899999832142698870387887966535434899999
Q gi|254780229|r 1561 LENVQGDERDRIFISFTYGPHEPGGRVFQRFGPINSDIGWRRLNVLFTRSRRRIEVFSTMRYLDVVVDIDSKLGIRVMRD 1640 (1775)
Q Consensus 1561 le~vQGdERDvI~~S~~yg~~~~~g~~~~~fGpln~~gg~rRlNVa~sRAr~~~~v~~s~~~~~i~~~~~~~~g~~~lk~ 1640 (1775)
T Consensus 627 ~dg~~g~~~~~~~~~~~~~~~---------~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~c~~~~~~~ 690 (709)
T TIGR00376 627 VDGFQGREKEVIILSFVRSNR---------KGEVGFLKDLRRLNVALTRARRKLILVGDSETLS-------RCGNKFYKR 690 (709)
T ss_pred CCCCCCCCCCEEEEEEECCCC---------CCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHH-------HHHHHHHHH
T ss_conf 345456543334542100355---------5432202244332233210112056640436776-------530057889
Q ss_pred HHHHHHCC
Q ss_conf 99997406
Q gi|254780229|r 1641 FLHFAETG 1648 (1775)
Q Consensus 1641 ~l~~a~~g 1648 (1775)
T Consensus 691 ~~~~~~~~ 698 (709)
T TIGR00376 691 LVEWCKEN 698 (709)
T ss_pred HHHHHHHC
T ss_conf 99987531