HHsearch alignment for GI: 254780229 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=96.56 E-value=0.0046 Score=46.87 Aligned_cols=44 Identities=30% Similarity=0.441 Sum_probs=35.4
Q ss_pred HHHHHHH----HHCCCCE-EEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 8999998----5148955-994287877038999999999967982899601
Q gi|254780229|r 409 QHSAVID----VINGKNL-IIEGPPGTGKSQTITNIIAAAMLHGKKILFCAQ 455 (1775)
Q Consensus 409 Q~~av~~----~~~g~~~-vi~GPPGTGKSQTIaNlIa~~la~Gk~VLfVae 455 (1775)
T Consensus 14 QP~AI~~L~~~l~~G~~~QtLLGvTGsGKTFT~AnVIa~~---~rPTLV~aH 62 (667)
T TIGR00631 14 QPKAIAKLVEGLEAGEKEQTLLGVTGSGKTFTMANVIAQV---QRPTLVLAH 62 (667)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHH---CCCEEEECC
T ss_conf 1899999999985688714785321486278898999984---798499857