HHsearch alignment for GI: 254780229 and conserved domain: TIGR00635

>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.95  E-value=0.0022  Score=50.22  Aligned_cols=39  Identities=36%  Similarity=0.578  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHCCCC-----EEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             68999998514895-----59942878770389999999999679
Q gi|254780229|r  408 SQHSAVIDVINGKN-----LIIEGPPGTGKSQTITNIIAAAMLHG  447 (1775)
Q Consensus       408 SQ~~av~~~~~g~~-----~vi~GPPGTGKSQTIaNlIa~~la~G  447 (1775)
T Consensus        14 ~~L~l~I~AAk~R~e~LDH~LL~GPPGLGKT-TLA~IiA~Emg~~   57 (305)
T TIGR00635        14 EQLQLFIEAAKMRQEALDHLLLYGPPGLGKT-TLAHIIANEMGVN   57 (305)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEECCCCCCHH-HHHHHHHHHHCCC
T ss_conf             9999999999824897341663175687467-8999999983893