HHsearch alignment for GI: 254780229 and conserved domain: TIGR01074
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=95.71 E-value=0.056 Score=35.58 Aligned_cols=63 Identities=30% Similarity=0.435 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHHC
Q ss_conf 34689999985148955994287877038999999999967----982899601058999999864435
Q gi|254780229|r 406 DSSQHSAVIDVINGKNLIIEGPPGTGKSQTITNIIAAAMLH----GKKILFCAQKMAAIEVVRHRLEKA 470 (1775)
Q Consensus 406 DsSQ~~av~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~----Gk~VLfVaeK~aALdVV~~RL~~~ 470 (1775)
T Consensus 5 Np~Q~~AV~-Y~~GPlLVLAGA-GSGKT~VI~~KIayLi~~cgY~a~~IaAvTFTNKAA~EMkERVA~~ 71 (677)
T TIGR01074 5 NPQQQEAVE-YVGGPLLVLAGA-GSGKTRVITNKIAYLIQNCGYKAKNIAAVTFTNKAAREMKERVAKT 71 (677)
T ss_pred CHHHHHHHH-HHCCCCEEECCC-CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 743799998-615871465177-7786357888999987515878761689735237779999999852