HHsearch alignment for GI: 254780229 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=97.25 E-value=0.00046 Score=57.28 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=59.3
Q ss_pred CCCCCCEEEECCHHHCCHHH---HHHHHHHCCE--------EEEEECCCCCCCCHHHHHCCCCCC---------CCCCHH
Q ss_conf 22541078860632369899---8898861182--------899607786686201100013444---------432011
Q gi|254780229|r 1358 KDVKFDLVIMDESSQIKPED---ALGVIARGKQ--------IVVVGDPKQLPPTRFFDHDNDQED---------YDEEVA 1417 (1775)
Q Consensus 1358 ~~~~FD~VI~DEASQ~~~~~---al~al~rakq--------vvvvGD~kQlpPt~ff~~~~~~~~---------~~~~~~ 1417 (1775)
T Consensus 346 N~L~~DVLvvDEaSMVdl~lm~kL~~A~~~~~k~~KLy~~~LIllGD~nQL~sveaG~Vl~~l~~~~~~g~~~y~~~~~a 425 (753)
T TIGR01447 346 NPLPLDVLVVDEASMVDLPLMAKLLKALPPNTKDKKLYADRLILLGDKNQLPSVEAGAVLGDLCELANEGESLYAAEKSA 425 (753)
T ss_pred CCCCCCEEEECCCHHCCHHHHHHHHHHCCCCCCCCCHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 88985527870600226799999997226300132010102001226788887543555799999975375002454888
Q ss_pred ----HCCCCCHHHHHHHHH-CC----CCEECCCCCCCCHHHHHHHHHHCC
Q ss_conf ----014400079999975-58----752053055799789999985036
Q gi|254780229|r 1418 ----AVSQTESILDALLPL-FS----MRRLQWHYRSLNENLIACSNYYFY 1458 (1775)
Q Consensus 1418 ----~~~~~eSild~~~~~-~p----~~~L~~HyRs~~e~lI~fSN~~fY 1458 (1775)
T Consensus 426 ~l~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~ShRf~~~S~i~~La~Ai~ 475 (753)
T TIGR01447 426 LLAELLGEVAAVKKIASKTRNPLSDNVCMLKTSHRFGKDSGIGQLAKAIN 475 (753)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 99985478899998531211523544765301220487506789999997