HHsearch alignment for GI: 254780229 and conserved domain: TIGR01447

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=97.25  E-value=0.00046  Score=57.28  Aligned_cols=101  Identities=16%  Similarity=0.152  Sum_probs=59.3

Q ss_pred             CCCCCCEEEECCHHHCCHHH---HHHHHHHCCE--------EEEEECCCCCCCCHHHHHCCCCCC---------CCCCHH
Q ss_conf             22541078860632369899---8898861182--------899607786686201100013444---------432011
Q gi|254780229|r 1358 KDVKFDLVIMDESSQIKPED---ALGVIARGKQ--------IVVVGDPKQLPPTRFFDHDNDQED---------YDEEVA 1417 (1775)
Q Consensus      1358 ~~~~FD~VI~DEASQ~~~~~---al~al~rakq--------vvvvGD~kQlpPt~ff~~~~~~~~---------~~~~~~ 1417 (1775)
T Consensus       346 N~L~~DVLvvDEaSMVdl~lm~kL~~A~~~~~k~~KLy~~~LIllGD~nQL~sveaG~Vl~~l~~~~~~g~~~y~~~~~a  425 (753)
T TIGR01447       346 NPLPLDVLVVDEASMVDLPLMAKLLKALPPNTKDKKLYADRLILLGDKNQLPSVEAGAVLGDLCELANEGESLYAAEKSA  425 (753)
T ss_pred             CCCCCCEEEECCCHHCCHHHHHHHHHHCCCCCCCCCHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             88985527870600226799999997226300132010102001226788887543555799999975375002454888


Q ss_pred             ----HCCCCCHHHHHHHHH-CC----CCEECCCCCCCCHHHHHHHHHHCC
Q ss_conf             ----014400079999975-58----752053055799789999985036
Q gi|254780229|r 1418 ----AVSQTESILDALLPL-FS----MRRLQWHYRSLNENLIACSNYYFY 1458 (1775)
Q Consensus      1418 ----~~~~~eSild~~~~~-~p----~~~L~~HyRs~~e~lI~fSN~~fY 1458 (1775)
T Consensus       426 ~l~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~ShRf~~~S~i~~La~Ai~  475 (753)
T TIGR01447       426 LLAELLGEVAAVKKIASKTRNPLSDNVCMLKTSHRFGKDSGIGQLAKAIN  475 (753)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             99985478899998531211523544765301220487506789999997