HHsearch alignment for GI: 254780229 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=96.84 E-value=0.00094 Score=54.07 Aligned_cols=39 Identities=31% Similarity=0.455 Sum_probs=35.8
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 689999985148955994287877038999999999967
Q gi|254780229|r 408 SQHSAVIDVINGKNLIIEGPPGTGKSQTITNIIAAAMLH 446 (1775)
Q Consensus 408 SQ~~av~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~ 446 (1775)
T Consensus 231 ~Q~~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~ 269 (753)
T TIGR01447 231 WQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQ 269 (753)
T ss_pred HHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999998608768998798897789999999999998