HHsearch alignment for GI: 254780229 and conserved domain: TIGR02782
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=95.80 E-value=0.015 Score=41.54 Aligned_cols=55 Identities=24% Similarity=0.439 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHH-HHHCCCCEEEECCCCCCCHHHHHHHHHHHHHC-C---CEEEEEECCHHHH
Q ss_conf 6677346899999-85148955994287877038999999999967-9---8289960105899
Q gi|254780229|r 402 IDDSDSSQHSAVI-DVINGKNLIIEGPPGTGKSQTITNIIAAAMLH-G---KKILFCAQKMAAI 460 (1775)
Q Consensus 402 ~~~aDsSQ~~av~-~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~-G---k~VLfVaeK~aAL 460 (1775)
T Consensus 123 imta--aQ~d~l~~Av~ar~NIlv~GGTGSGKT-TLaNAlla~I~~l~~P~dR~-vIiEDT~El 182 (315)
T TIGR02782 123 IMTA--AQRDVLREAVAARKNILVVGGTGSGKT-TLANALLAEIAKLNDPDDRV-VIIEDTAEL 182 (315)
T ss_pred CCCH--HHHHHHHHHHHHCCCEEEECCCCCCHH-HHHHHHHHHHHHCCCCCCEE-EEEECCHHH
T ss_conf 4557--899999999971298899814588579-99999999885216999618-998547132