HHsearch alignment for GI: 254780229 and conserved domain: TIGR02788
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=95.45 E-value=0.015 Score=41.54 Aligned_cols=37 Identities=24% Similarity=0.562 Sum_probs=33.2
Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 98514895599428787703899999999996798289
Q gi|254780229|r 414 IDVINGKNLIIEGPPGTGKSQTITNIIAAAMLHGKKIL 451 (1775)
Q Consensus 414 ~~~~~g~~~vi~GPPGTGKSQTIaNlIa~~la~Gk~VL 451 (1775)
T Consensus 153 ~Ai~~~knIii~GGTgSGKT-Tf~kal~~~IP~~ER~i 189 (328)
T TIGR02788 153 LAIASRKNIIISGGTGSGKT-TFLKALVKEIPKDERLI 189 (328)
T ss_pred HHHHCCCEEEEEECCCCHHH-HHHHHHHHCCCCCCCEE
T ss_conf 99873891999906897189-99999973276225278