HHsearch alignment for GI: 254780229 and conserved domain: TIGR03158
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=96.43 E-value=0.018 Score=40.68 Aligned_cols=11 Identities=45% Similarity=0.573 Sum_probs=5.5
Q ss_pred CCEEEECCHHH
Q ss_conf 10788606323
Q gi|254780229|r 1362 FDLVIMDESSQ 1372 (1775)
Q Consensus 1362 FD~VI~DEASQ 1372 (1775)
T Consensus 146 l~~VViDEiH~ 156 (357)
T TIGR03158 146 FSTVIFDEFHL 156 (357)
T ss_pred CCEEEEEEEHC
T ss_conf 67477562000