HHsearch alignment for GI: 254780229 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.99 E-value=0.019 Score=40.40 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=29.5
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHH-HHCCCEEEEEECCHH
Q ss_conf 48955994287877038999999999-967982899601058
Q gi|254780229|r 418 NGKNLIIEGPPGTGKSQTITNIIAAA-MLHGKKILFCAQKMA 458 (1775)
Q Consensus 418 ~g~~~vi~GPPGTGKSQTIaNlIa~~-la~Gk~VLfVaeK~a 458 (1775)
T Consensus 37 ~~~~l~i~G~~GsGKT-HLl~a~~~~~~~~~~~~~yl~~~~~ 77 (226)
T TIGR03420 37 GDRFLYLWGESGSGKS-HLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCEEEEECCCCCCHH-HHHHHHHHHHHCCCCCEEEECHHHH
T ss_conf 8886999899999889-9999999998626995799529998