HHsearch alignment for GI: 254780229 and conserved domain: TIGR03420

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.99  E-value=0.019  Score=40.40  Aligned_cols=40  Identities=25%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHH-HHCCCEEEEEECCHH
Q ss_conf             48955994287877038999999999-967982899601058
Q gi|254780229|r  418 NGKNLIIEGPPGTGKSQTITNIIAAA-MLHGKKILFCAQKMA  458 (1775)
Q Consensus       418 ~g~~~vi~GPPGTGKSQTIaNlIa~~-la~Gk~VLfVaeK~a  458 (1775)
T Consensus        37 ~~~~l~i~G~~GsGKT-HLl~a~~~~~~~~~~~~~yl~~~~~   77 (226)
T TIGR03420        37 GDRFLYLWGESGSGKS-HLLQAACAAAEERGKSAIYLPLAEL   77 (226)
T ss_pred             CCCEEEEECCCCCCHH-HHHHHHHHHHHCCCCCEEEECHHHH
T ss_conf             8886999899999889-9999999998626995799529998