HHsearch alignment for GI: 254780229 and conserved domain: cd00221
>cd00221 Vsr Very Short Patch Repair (Vsr) Endonuclease. Endonucleases in DNA repair that recognize damaged DNA and cleave the phosphodiester backbone. Vsr endonucleases have a common endonuclease topology that has been tailored for recognition of TG mismatches.
Probab=98.46 E-value=1.2e-06 Score=84.26 Aligned_cols=82 Identities=30% Similarity=0.525 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCEECCEEEECCCCCCCEEEEEECCCHHHCCCC-------------------C
Q ss_conf 689989999999999789989706575771012573368988831799974580236832-------------------4
Q gi|254780229|r 1660 KQDSDFAVSVVNELEKTGFACDSQLGDMGFSIDVVVRDPNNPGHYLMGIECDGAMYNSAK-------------------S 1720 (1775)
Q Consensus 1660 ~~ds~fe~~v~~~L~~~G~~v~~qvg~~~~riDl~v~~p~~pg~~~l~iecDG~~yh~~~-------------------~ 1720 (1775)
T Consensus 15 sk~TkpE~~vrk~L~~~G~Ryr~~~k~lpG~PDiv~~------~~k~aIFvdGCFWHgh~~~~~~~pk~n~~fW~~Ki~~ 88 (115)
T cd00221 15 SKDTKPERAVRSALWELGYRFRKQDKDLPGKPDIVVP------GYRLAIFVDGCFWHGHPCHKRKPPPKNTEFWLEKIER 88 (115)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEC------CCCEEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 7998699999999998899899668877999999735------7628999324043388875788898538999999999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECHHH
Q ss_conf 867774448999956990999322164
Q gi|254780229|r 1721 ARDRDRLRQEVLERMGWRIRRIWSVDW 1747 (1775)
Q Consensus 1721 ardrD~~Rq~vLe~~GW~~~Riws~dw 1747 (1775)
T Consensus 89 N~~RD~~~~~~L~~~GW~v~~vWEcel 115 (115)
T cd00221 89 NVERDRRVQAALERLGWRVLRVWECEL 115 (115)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 999899999999988998999983059